Variant report

Variant	nsv1007963
Chromosome Location	chr3:143836773-144000203
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:143880755-143881509	HepG2	liver:	n/a	chr3:143881380-143881396
2	ARID3A	chr3:143837779-143837958	HepG2	liver:	n/a	n/a
3	ATF2	chr3:143846465-143847491	GM12878	blood:	n/a	n/a
4	ATF2	chr3:143846788-143847440	GM12878	blood:	n/a	n/a
5	ATF2	chr3:143848478-143849143	GM12878	blood:	n/a	n/a
6	ATF2	chr3:143848494-143849137	GM12878	blood:	n/a	n/a
7	BATF	chr3:143848423-143849121	GM12878	blood:	n/a	n/a
8	BATF	chr3:143846881-143847436	GM12878	blood:	n/a	n/a
9	BATF	chr3:143848617-143849040	GM12878	blood:	n/a	n/a
10	BCL11A	chr3:143848674-143849066	GM12878	blood:	n/a	n/a
11	BCL11A	chr3:143848485-143849120	GM12878	blood:	n/a	n/a
12	BCL3	chr3:143848594-143849036	GM12878	blood:	n/a	n/a
13	BCLAF1	chr3:143846960-143847480	GM12878	blood:	n/a	n/a
14	BCLAF1	chr3:143846949-143847398	GM12878	blood:	n/a	n/a
15	CCNT2	chr3:143881095-143881198	K562	blood:	n/a	n/a
16	CEBPB	chr3:143837787-143838028	HepG2	liver:	n/a	chr3:143837889-143837900
17	CEBPB	chr3:143880919-143881417	MCF-7	breast:	n/a	n/a
18	CEBPB	chr3:143897417-143897862	A549	lung:	n/a	chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636
19	CEBPB	chr3:143875974-143876288	HepG2	liver:	n/a	chr3:143876141-143876152
20	CEBPB	chr3:143906448-143906725	K562	blood:	n/a	chr3:143906601-143906612 chr3:143906603-143906612
21	CEBPB	chr3:143992962-143993250	HepG2	liver:	n/a	chr3:143993110-143993121
22	CEBPB	chr3:143875968-143876293	IMR90	lung:	n/a	chr3:143876141-143876152
23	CEBPB	chr3:143897551-143897790	A549	lung:	n/a	chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636
24	CEBPB	chr3:143881018-143881159	A549	lung:	n/a	n/a
25	CEBPB	chr3:143837714-143838057	K562	blood:	n/a	chr3:143837889-143837900
26	CEBPB	chr3:143991644-143991933	ECC-1	luminal epithelium:	n/a	n/a
27	CEBPB	chr3:143993053-143993230	K562	blood:	n/a	chr3:143993110-143993121
28	CEBPB	chr3:143906424-143906761	HepG2	liver:	n/a	chr3:143906601-143906612 chr3:143906603-143906612
29	CEBPB	chr3:143906399-143906788	IMR90	lung:	n/a	chr3:143906601-143906612 chr3:143906603-143906612
30	CEBPB	chr3:143897353-143897873	MCF-7	breast:	n/a	chr3:143897387-143897399 chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636 chr3:143897376-143897387
31	CEBPB	chr3:143897449-143897810	IMR90	lung:	n/a	chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636
32	CEBPB	chr3:143971777-143972014	MCF-7	breast:	n/a	chr3:143971856-143971869
33	CEBPB	chr3:143978456-143978653	A549	lung:	n/a	n/a
34	CEBPB	chr3:143837747-143838060	H1-hESC	embryonic stem cell:	n/a	chr3:143837889-143837900
35	CEBPB	chr3:143897490-143897872	MCF-7	breast:	n/a	chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636
36	CEBPB	chr3:143906442-143906770	A549	lung:	n/a	chr3:143906601-143906612 chr3:143906603-143906612
37	CEBPB	chr3:143897454-143897839	ECC-1	luminal epithelium:	n/a	chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636
38	CEBPB	chr3:143860955-143861494	IMR90	lung:	n/a	n/a
39	CEBPB	chr3:143837707-143838082	IMR90	lung:	n/a	chr3:143837889-143837900
40	CEBPB	chr3:143897462-143897823	H1-hESC	embryonic stem cell:	n/a	chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636
41	CEBPB	chr3:143992941-143993246	A549	lung:	n/a	chr3:143993110-143993121
42	CEBPB	chr3:143897453-143897816	A549	lung:	n/a	chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636
43	CEBPB	chr3:143992939-143993236	IMR90	lung:	n/a	chr3:143993110-143993121
44	CEBPB	chr3:143880952-143881393	IMR90	lung:	n/a	n/a
45	CEBPB	chr3:143837733-143838055	A549	lung:	n/a	chr3:143837889-143837900
46	CEBPB	chr3:143837803-143838030	MCF-7	breast:	n/a	chr3:143837889-143837900
47	CEBPB	chr3:143848481-143849203	GM12878	blood:	n/a	n/a
48	CEBPB	chr3:143866776-143866979	HepG2	liver:	n/a	chr3:143866817-143866828
49	CEBPB	chr3:143897455-143897752	K562	blood:	n/a	chr3:143897627-143897636 chr3:143897626-143897637 chr3:143897627-143897636 chr3:143897627-143897636
50	CEBPB	chr3:143837747-143837971	Hela-S3	cervix:	n/a	chr3:143837889-143837900

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:143993048-143993098	GM12891	blood:	n/a
2	chr3:143993048-143993098	HEK293	kidney:	embryo
3	chr3:143861209-143861259	AG09319	gingival:	n/a
4	chr3:143861209-143861259	H1-hESC	embryonic stem cell:	embryo
5	chr3:143847318-143847368	AG04450	lung:	fetal
6	chr3:143993048-143993098	BJ	skin:	n/a
7	chr3:143861209-143861259	HCPEpiC	choroid plexus:	n/a
8	chr3:143847318-143847368	HCPEpiC	choroid plexus:	n/a
9	chr3:143993048-143993098	MCF-7	breast:	n/a
10	chr3:143861209-143861259	HEK293	kidney:	embryo
11	chr3:143993048-143993098	HIPEpiC	eye:	n/a
12	chr3:143847318-143847368	NHDF-neo	bronchial:	n/a
13	chr3:143847318-143847368	AG09319	gingival:	n/a
14	chr3:143861209-143861259	HRCEpiC	kidney:	n/a
15	chr3:143847318-143847368	ProgFib	skin:	n/a
16	chr3:143993048-143993098	SK-N-MC	brain:	n/a
17	chr3:143993048-143993098	HRPEpiC	eye:	n/a
18	chr3:143993048-143993098	NT2-D1	testis:	n/a
19	chr3:143847318-143847368	BE2_C	brain:	n/a
20	chr3:143847318-143847368	K562	blood:	n/a
21	chr3:143861209-143861259	SK-N-MC	brain:	n/a
22	chr3:143847318-143847368	PrEC	prostate:	n/a
23	chr3:143847318-143847368	SK-N-MC	brain:	n/a
24	chr3:143861209-143861259	MCF10A-Er-Src	breast:	n/a
25	chr3:143993048-143993098	AG10803	skin:	n/a
26	chr3:143993048-143993098	HUVEC	blood vessel:	n/a
27	chr3:143847318-143847368	GM06990	blood:	n/a
28	chr3:143993048-143993098	AG04450	lung:	fetal
29	chr3:143861209-143861259	BE2_C	brain:	n/a
30	chr3:143993048-143993098	GM12878	blood:	n/a
31	chr3:143861209-143861259	A549	lung:	n/a
32	chr3:143861209-143861259	HRPEpiC	eye:	n/a
33	chr3:143861209-143861259	MCF-7	breast:	n/a
34	chr3:143847318-143847368	AoSMC	blood vessel:	n/a
35	chr3:143861209-143861259	Hepatocyte	liver:	n/a
36	chr3:143861209-143861259	IMR90	lung:	fetal
37	chr3:143993048-143993098	SK-N-SH	brain:	n/a
38	chr3:143847318-143847368	GM12892	blood:	n/a
39	chr3:143847318-143847368	AG04449	skin:	fetal
40	chr3:143847318-143847368	MCF-7	breast:	n/a
41	chr3:143861209-143861259	T-47D	breast:	n/a
42	chr3:143861209-143861259	BJ	skin:	n/a
43	chr3:143847318-143847368	T-47D	breast:	n/a
44	chr3:143847318-143847368	GM12878	blood:	n/a
45	chr3:143847318-143847368	ECC-1	luminal epithelium:	n/a
46	chr3:143861209-143861259	GM19239	blood:	n/a
47	chr3:143847318-143847368	HRPEpiC	eye:	n/a
48	chr3:143993048-143993098	GM06990	blood:	n/a
49	chr3:143861209-143861259	NHBE	bronchial:	n/a
50	chr3:143861209-143861259	U87	brain:	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:143970717..143972446-chr3:143972808..143975131,2	K562	blood:
2	chr3:143985749..143987878-chr3:143995682..143998153,2	MCF-7	breast:
3	chr3:143852522..143855348-chr3:143858842..143861138,3	K562	blood:
4	chr3:143872336..143874000-chr3:143882246..143884179,2	K562	blood:
5	chr3:143865202..143867000-chr3:143870211..143871810,2	K562	blood:
6	chr3:143852522..143854486-chr3:143858842..143860873,2	K562	blood:
7	chr3:143962916..143965594-chr3:143970666..143973506,3	MCF-7	breast:
8	chr3:143851188..143852094-chr3:143864087..143864848,2	MCF-7	breast:
9	chr3:143852522..143854486-chr3:143858842..143860873,2	K562	blood:
10	chr3:143849261..143851661-chr3:143853910..143857233,3	K562	blood:
11	chr3:143849261..143851661-chr3:143853910..143857233,3	K562	blood:
12	chr3:143882905..143885862-chr3:143887105..143889283,2	MCF-7	breast:
13	chr3:143872336..143874000-chr3:143882246..143884179,2	K562	blood:
14	chr3:143892804..143894519-chr3:143897127..143900073,2	K562	blood:
15	chr3:143892267..143895225-chr3:144092173..144094543,2	MCF-7	breast:
16	chr3:143851188..143852094-chr3:143864087..143864848,2	MCF-7	breast:
17	chr3:143690019..143692645-chr3:143838592..143840602,2	MCF-7	breast:
18	chr3:143862145..143864475-chr3:143867360..143869304,2	K562	blood:
19	chr3:143852522..143855348-chr3:143858842..143861138,3	K562	blood:
20	chr19:18990145..18992533-chr3:143946835..143949727,2	MCF-7	breast:
21	chr3:143890771..143894320-chr3:143898037..143901332,4	MCF-7	breast:
22	chr12:53061288..53061963-chr3:143990811..143991640,2	MCF-7	breast:
23	chr3:143690098..143692740-chr3:143921809..143923787,2	MCF-7	breast:
24	chr3:143694158..143694846-chr3:143996996..143997942,2	MCF-7	breast:
25	chr3:143886285..143888723-chr3:143892668..143894323,2	MCF-7	breast:
26	chr3:143976073..143978906-chr3:143983000..143985910,2	K562	blood:
27	chr3:143690008..143692264-chr3:143879594..143881502,2	MCF-7	breast:
28	chr3:143970717..143972446-chr3:143972808..143975131,2	K562	blood:
29	chr3:143886285..143888723-chr3:143892668..143894323,2	MCF-7	breast:
30	chr3:143962916..143965594-chr3:143970666..143973506,3	MCF-7	breast:
31	chr3:143689793..143693071-chr3:143879753..143882837,6	MCF-7	breast:
32	chr3:143882905..143885862-chr3:143887105..143889283,2	MCF-7	breast:
33	chr3:143890771..143894320-chr3:143898037..143901332,4	MCF-7	breast:
34	chr3:143902901..143904761-chr3:143930558..143932653,2	MCF-7	breast:
35	chr3:143691791..143694005-chr3:143990028..143992353,2	K562	blood:
36	chr3:143900814..143902970-chr3:143905127..143907243,2	K562	blood:
37	chr3:143690547..143692210-chr3:143990164..143992308,2	MCF-7	breast:
38	chr3:143976073..143978906-chr3:143983000..143985910,2	K562	blood:
39	chr3:143865202..143867000-chr3:143870211..143871810,2	K562	blood:
40	chr3:143902901..143904761-chr3:143930558..143932653,2	MCF-7	breast:
41	chr3:143892804..143894519-chr3:143897127..143900073,2	K562	blood:
42	chr3:143862145..143864475-chr3:143867360..143869304,2	K562	blood:
43	chr3:143940644..143942210-chr3:144039456..144041845,2	MCF-7	breast:
44	chr3:143985749..143987878-chr3:143995682..143998153,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C3orf58-1	chr3:143936262-143938475	NONHSAT092535

Variant related genes	Relation type
RNA5SP144	TF binding region
RNA5SP144	CpG island
ENSG00000181744	chromatin interactions
ENSG00000222778	chromatin interactions
ENSG00000269694	chromatin interactions

Extended variants
information (count: 4425 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:4425 , 50 per page) page: 1 2 3 4 5 6 7 ... 89

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139893782	chr3:143836778-143836779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs75695939	chr3:143836794-143836795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs577942946	chr3:143836977-143836978	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs545222849	chr3:143836984-143836985	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs188462250	chr3:143836991-143836992	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs191488806	chr3:143837017-143837018	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs184015571	chr3:143837027-143837028	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs368081436	chr3:143837032-143837033	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs35679204	chr3:143837050-143837051	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs375821277	chr3:143837065-143837066	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs79954642	chr3:143837069-143837070	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs188694242	chr3:143837193-143837194	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs370647428	chr3:143837199-143837200	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs191263622	chr3:143837205-143837206	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs541161361	chr3:143837217-143837218	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs184452781	chr3:143837250-143837251	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs568235391	chr3:143837253-143837254	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs150810334	chr3:143837260-143837261	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs190507065	chr3:143837286-143837287	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs570189263	chr3:143837293-143837294	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs527751794	chr3:143837334-143837335	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs114807021	chr3:143837358-143837359	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs549621903	chr3:143837457-143837458	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs374314663	chr3:143837465-143837466	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs567164269	chr3:143837481-143837482	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs570909200	chr3:143837506-143837507	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs534592783	chr3:143837542-143837543	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs369103939	chr3:143837591-143837592	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs182216421	chr3:143837631-143837632	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs553153052	chr3:143837636-143837637	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs571358627	chr3:143837648-143837649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs78443960	chr3:143837664-143837665	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs80349002	chr3:143837666-143837667	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs575369185	chr3:143837687-143837688	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs139187507	chr3:143837693-143837694	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs531024408	chr3:143837733-143837734	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs60557041	chr3:143837831-143837832	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs11919008	chr3:143837908-143837909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs538537988	chr3:143837910-143837911	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs573978696	chr3:143837936-143837937	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs541022472	chr3:143837953-143837954	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs559459729	chr3:143837971-143837972	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs533259236	chr3:143837993-143837994	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs545051062	chr3:143838002-143838003	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs73006424	chr3:143838017-143838018	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs369079439	chr3:143838022-143838023	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs372302677	chr3:143838031-143838032	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs201493816	chr3:143838079-143838080	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs11915005	chr3:143838095-143838096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs35643472	chr3:143838096-143838097	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
microdeletion syndrome	22180640	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
abnormal development	18461090	CNVD
Cancer	21129771	CNVD
Ovarian cancer	23621864	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21509527	CNVD
Congenital anomalies of the kidney and urinary tract	20605837	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Gastrointestinal stromal cancer	20818650	CNVD

Chromatin state (count:549 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143825200-143842000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:143830000-143847200	Weak transcription	Aorta	Aorta
3	chr3:143831600-143837000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:143831600-143838200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:143831600-143838600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:143832800-143838200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:143832800-143838200	Weak transcription	Fetal Brain Male	brain
8	chr3:143834200-143836800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:143834200-143837000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:143834200-143837200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:143834200-143838200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:143834200-143838200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:143834200-143838400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:143834400-143836800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:143834400-143838200	Weak transcription	Brain Angular Gyrus	brain
16	chr3:143834400-143838400	Weak transcription	Brain Substantia Nigra	brain
17	chr3:143834800-143837800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:143834800-143837800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:143835000-143836800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:143836800-143837200	Enhancers	Brain Hippocampus Middle	brain
21	chr3:143836800-143839600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:143836800-143839800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr3:143837000-143837400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:143837000-143837400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:143837200-143837400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:143837200-143837400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr3:143837200-143837400	Enhancers	Fetal Intestine Large	intestine
28	chr3:143837200-143837800	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:143837200-143839000	Enhancers	Liver	Liver
30	chr3:143837200-143839000	Enhancers	Fetal Intestine Small	intestine
31	chr3:143837400-143837600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:143837400-143838000	Weak transcription	Fetal Intestine Large	intestine
33	chr3:143837400-143838200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:143837400-143838400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:143837600-143839200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:143837800-143838000	Enhancers	Brain Hippocampus Middle	brain
37	chr3:143837800-143839200	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr3:143837800-143839200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:143838000-143839000	Enhancers	Fetal Intestine Large	intestine
40	chr3:143838200-143838800	Enhancers	Brain Angular Gyrus	brain
41	chr3:143838200-143838800	Enhancers	Brain Anterior Caudate	brain
42	chr3:143838200-143838800	Enhancers	Brain Cingulate Gyrus	brain
43	chr3:143838200-143838800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr3:143838200-143839000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr3:143838200-143839000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:143838200-143839000	Enhancers	Fetal Brain Male	brain
47	chr3:143838200-143839200	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr3:143838200-143839200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr3:143838200-143841000	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr3:143838400-143838600	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links