Variant report

Variant	nsv1008083
Chromosome Location	chr3:196374919-196460768
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1804)
CpG islands
(count:1344)
Chromatin interactive
region (count:134)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1804 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:196378058-196378073	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:196439132-196439308	HepG2	liver:	n/a	n/a
3	ARID3A	chr3:196377857-196378145	K562	blood:	n/a	n/a
4	ARID3A	chr3:196389681-196390182	K562	blood:	n/a	n/a
5	ARID3A	chr3:196393027-196393333	HepG2	liver:	n/a	n/a
6	ARID3A	chr3:196403950-196403987	HepG2	liver:	n/a	n/a
7	ARID3A	chr3:196411796-196412061	K562	blood:	n/a	n/a
8	ATF1	chr3:196415231-196415534	K562	blood:	n/a	n/a
9	ATF1	chr3:196377733-196378107	K562	blood:	n/a	n/a
10	ATF2	chr3:196375072-196375453	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF2	chr3:196411684-196412205	GM12878	blood:	n/a	n/a
12	ATF2	chr3:196438400-196439394	GM12878	blood:	n/a	n/a
13	ATF2	chr3:196411636-196412353	GM12878	blood:	n/a	n/a
14	ATF2	chr3:196392674-196393441	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr3:196438360-196439046	GM12878	blood:	n/a	n/a
16	ATF3	chr3:196377813-196378078	K562	blood:	n/a	n/a
17	ATF3	chr3:196377793-196378103	K562	blood:	n/a	n/a
18	BACH1	chr3:196411876-196411958	K562	blood:	n/a	n/a
19	BACH1	chr3:196392757-196393427	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr3:196389828-196390179	K562	blood:	n/a	n/a
21	BACH1	chr3:196421301-196422147	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr3:196438692-196439842	H1-hESC	embryonic stem cell:	n/a	n/a
23	BATF	chr3:196411796-196412184	GM12878	blood:	n/a	n/a
24	BATF	chr3:196438568-196438980	GM12878	blood:	n/a	n/a
25	BATF	chr3:196438630-196438910	GM12878	blood:	n/a	n/a
26	BCL11A	chr3:196438587-196439046	GM12878	blood:	n/a	chr3:196438920-196438933
27	BCL11A	chr3:196438672-196438977	GM12878	blood:	n/a	chr3:196438920-196438933
28	BCL11A	chr3:196411859-196412222	GM12878	blood:	n/a	n/a
29	BCL3	chr3:196438540-196439692	GM12878	blood:	n/a	chr3:196439558-196439571 chr3:196438920-196438933 chr3:196439232-196439245
30	BCL3	chr3:196411847-196412218	GM12878	blood:	n/a	n/a
31	BCLAF1	chr3:196438614-196439567	GM12878	blood:	n/a	chr3:196438920-196438933 chr3:196439232-196439245
32	BCLAF1	chr3:196411758-196412278	GM12878	blood:	n/a	n/a
33	BCLAF1	chr3:196411692-196412378	GM12878	blood:	n/a	n/a
34	BCLAF1	chr3:196377716-196378230	K562	blood:	n/a	n/a
35	BCLAF1	chr3:196438473-196439461	GM12878	blood:	n/a	chr3:196438920-196438933 chr3:196439232-196439245
36	BHLHE40	chr3:196438488-196439677	HepG2	liver:	n/a	chr3:196439159-196439175 chr3:196439356-196439372 chr3:196439325-196439341
37	BHLHE40	chr3:196411742-196412226	GM12878	blood:	n/a	n/a
38	BHLHE40	chr3:196411808-196412074	K562	blood:	n/a	n/a
39	BHLHE40	chr3:196438422-196439875	K562	blood:	n/a	chr3:196439159-196439175 chr3:196439356-196439372 chr3:196439325-196439341
40	BHLHE40	chr3:196444114-196444431	GM12878	blood:	n/a	n/a
41	BHLHE40	chr3:196393030-196393334	K562	blood:	n/a	n/a
42	BHLHE40	chr3:196394338-196394538	K562	blood:	n/a	n/a
43	BHLHE40	chr3:196392976-196393473	HepG2	liver:	n/a	n/a
44	BHLHE40	chr3:196377606-196378190	K562	blood:	n/a	chr3:196377790-196377806
45	BHLHE40	chr3:196438429-196439866	GM12878	blood:	n/a	chr3:196439159-196439175 chr3:196439356-196439372 chr3:196439325-196439341
46	BRCA1	chr3:196439691-196439753	HepG2	liver:	n/a	n/a
47	BRCA1	chr3:196377822-196378202	Hela-S3	cervix:	n/a	n/a
48	BRCA1	chr3:196439230-196439430	HepG2	liver:	n/a	n/a
49	BRCA1	chr3:196438896-196439390	Hela-S3	cervix:	n/a	n/a
50	BRCA1	chr3:196411690-196412056	Hela-S3	cervix:	n/a	n/a

(count:1344 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:196387120-196387170	HUVEC	blood vessel:	n/a
2	chr3:196439733-196439783	GM12878	blood:	n/a
3	chr3:196387120-196387170	HUVEC	blood vessel:	n/a
4	chr3:196439733-196439783	GM12878	blood:	n/a
5	chr3:196383704-196383754	PFSK-1	brain:	n/a
6	chr3:196438768-196438818	U87	brain:	n/a
7	chr3:196439567-196439617	HMEC	breast:	n/a
8	chr3:196387120-196387170	NH-A	brain:	n/a
9	chr3:196443006-196443056	NB4	blood:	n/a
10	chr3:196439051-196439101	Jurkat	blood:	n/a
11	chr3:196438875-196438925	MCF-7	breast:	n/a
12	chr3:196435434-196435484	BE2_C	brain:	n/a
13	chr3:196386877-196386927	SAEC	small airway:	n/a
14	chr3:196385431-196385481	U87	brain:	n/a
15	chr3:196385431-196385481	Hepatocyte	liver:	n/a
16	chr3:196383704-196383754	HRE	kidney:	n/a
17	chr3:196438875-196438925	CMK	blood:	n/a
18	chr3:196388687-196388737	Caco-2	colon:	n/a
19	chr3:196435434-196435484	HUVEC	blood vessel:	n/a
20	chr3:196383704-196383754	NHBE	bronchial:	n/a
21	chr3:196439273-196439323	ECC-1	luminal epithelium:	n/a
22	chr3:196383704-196383754	CMK	blood:	n/a
23	chr3:196388687-196388737	Hela-S3	cervix:	n/a
24	chr3:196392615-196392665	H1-hESC	embryonic stem cell:	embryo
25	chr3:196438875-196438925	HEEpiC	esophagus:	n/a
26	chr3:196438463-196438513	AG04449	skin:	fetal
27	chr3:196438768-196438818	PrEC	prostate:	n/a
28	chr3:196439051-196439101	PrEC	prostate:	n/a
29	chr3:196438875-196438925	HCPEpiC	choroid plexus:	n/a
30	chr3:196387505-196387555	BJ	skin:	n/a
31	chr3:196440087-196440137	SK-N-MC	brain:	n/a
32	chr3:196439273-196439323	NH-A	brain:	n/a
33	chr3:196438875-196438925	GM12878	blood:	n/a
34	chr3:196439273-196439323	NHBE	bronchial:	n/a
35	chr3:196377815-196377865	HEK293	kidney:	embryo
36	chr3:196388687-196388737	H1-hESC	embryonic stem cell:	embryo
37	chr3:196385431-196385481	HEK293	kidney:	embryo
38	chr3:196385431-196385481	HRE	kidney:	n/a
39	chr3:196443006-196443056	SKMC	muscle:	n/a
40	chr3:196386877-196386927	NH-A	brain:	n/a
41	chr3:196387505-196387555	NT2-D1	testis:	n/a
42	chr3:196439632-196439682	BE2_C	brain:	n/a
43	chr3:196440087-196440137	NT2-D1	testis:	n/a
44	chr3:196388687-196388737	HRPEpiC	eye:	n/a
45	chr3:196385431-196385481	PrEC	prostate:	n/a
46	chr3:196392615-196392665	HRPEpiC	eye:	n/a
47	chr3:196392615-196392665	HEEpiC	esophagus:	n/a
48	chr3:196443006-196443056	HCF	heart:	n/a
49	chr3:196388687-196388737	HUVEC	blood vessel:	n/a
50	chr3:196438768-196438818	NT2-D1	testis:	n/a

(count:134 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr3:196383143..196385693-chr3:196386933..196389746,2	K562	blood:
2	chr3:196363568..196366046-chr3:196378273..196380581,2	MCF-7	breast:
3	chr3:196380595..196383173-chr3:196384647..196386327,3	K562	blood:
4	chr3:196436992..196439022-chr3:196562872..196564801,2	MCF-7	breast:
5	chr3:196366955..196369302-chr3:196387921..196390503,2	K562	blood:
6	chr3:196388727..196391488-chr3:196391495..196393071,2	K562	blood:
7	chr3:196387053..196390006-chr3:196393164..196395460,2	K562	blood:
8	chr3:196388727..196391488-chr3:196391495..196393071,2	K562	blood:
9	chr3:196359329..196360837-chr3:196376432..196378858,2	MCF-7	breast:
10	chr3:196372018..196375838-chr3:196376794..196379332,3	MCF-7	breast:
11	chr3:196392906..196394849-chr3:196406263..196408935,2	MCF-7	breast:
12	chr3:196279002..196280829-chr3:196379473..196381210,2	K562	blood:
13	chr13:114144361..114144897-chr3:196438900..196439408,2	Hela-S3	cervix:
14	chr3:196437517..196441322-chr3:196466504..196469916,7	MCF-7	breast:
15	chr3:196358787..196361224-chr3:196381738..196384867,4	MCF-7	breast:
16	chr3:196431972..196434130-chr3:196554088..196556513,2	MCF-7	breast:
17	chr3:196334907..196337248-chr3:196375808..196377333,2	K562	blood:
18	chr3:196387053..196390006-chr3:196393164..196395460,2	K562	blood:
19	chr3:196453778..196459617-chr3:196462505..196466877,7	K562	blood:
20	chr3:196422356..196424040-chr3:196425516..196428268,2	K562	blood:
21	chr3:196338343..196339261-chr3:196411534..196412124,2	K562	blood:
22	chr3:196439186..196440920-chr3:196447814..196449457,2	K562	blood:
23	chr3:196378698..196381049-chr3:196385890..196388101,2	MCF-7	breast:
24	chr3:196431457..196432978-chr3:196437874..196440076,2	MCF-7	breast:
25	chr3:196439223..196442061-chr3:196455509..196457033,2	MCF-7	breast:
26	chr3:196448141..196449801-chr3:196452831..196455131,2	MCF-7	breast:
27	chr3:196365267..196368079-chr3:196439058..196441272,2	K562	blood:
28	chr3:196458117..196461271-chr3:196464720..196468384,4	K562	blood:
29	chr3:196335774..196336843-chr3:196411441..196412683,26	K562	blood:
30	chr3:196442211..196444602-chr3:196465611..196468609,2	MCF-7	breast:
31	chr3:196358919..196361700-chr3:196395865..196398805,3	K562	blood:
32	chr3:196228000..196230318-chr3:196411872..196414109,2	MCF-7	breast:
33	chr3:196405316..196407808-chr3:196410537..196412716,2	K562	blood:
34	chr3:196428290..196431136-chr3:196437924..196439642,2	MCF-7	breast:
35	chr3:196376315..196378695-chr3:196407335..196409412,2	K562	blood:
36	chr3:196428523..196430323-chr3:196434515..196436680,2	MCF-7	breast:
37	chr3:196438752..196441400-chr3:196441706..196443635,2	K562	blood:
38	chr3:196359248..196359765-chr3:196411638..196412407,2	MCF-7	breast:
39	chr3:196296444..196298332-chr3:196436281..196438974,2	K562	blood:
40	chr3:196387463..196389877-chr3:196398456..196400761,2	K562	blood:
41	chr3:196455450..196457723-chr3:196459552..196462374,2	K562	blood:
42	chr3:196386634..196388553-chr3:196393960..196395721,2	K562	blood:
43	chr3:196420633..196422623-chr3:196693869..196695803,2	MCF-7	breast:
44	chr3:196449298..196451213-chr3:196453205..196454979,2	K562	blood:
45	chr3:196454587..196456718-chr3:196467718..196469476,2	K562	blood:
46	chr3:196437045..196438609-chr3:196441964..196443561,2	K562	blood:
47	chr3:196437045..196438609-chr3:196441964..196443561,2	K562	blood:
48	chr3:196290180..196291825-chr3:196386889..196389566,2	K562	blood:
49	chr3:196390679..196392869-chr3:196401709..196404174,2	MCF-7	breast:
50	chr3:196449037..196451802-chr3:196454140..196457776,3	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC33-1	chr3:196417084-196417250	XLOC_003007
2	lnc-PIGX-1	chr3:196381398-196381864	NONHSAT094354
3	lnc-LRRC33-1	chr3:196420022-196420127	XLOC_003007

No data

Variant related genes	Relation type
PIGX	TF binding region
RNU6-646P	TF binding region
CEP19	TF binding region
PIGX	CpG island
RNU6-646P	CpG island
CEP19	CpG island
ENSG00000174004	chromatin interactions
ENSG00000119231	chromatin interactions
ENSG00000174007	chromatin interactions
ENSG00000185798	chromatin interactions
ENSG00000163964	chromatin interactions
ENSG00000180370	chromatin interactions
ENSG00000150401	chromatin interactions
ENSG00000174013	chromatin interactions
ENSG00000201441	chromatin interactions
ENSG00000232065	chromatin interactions
ENSG00000119227	chromatin interactions
ENSG00000114503	chromatin interactions
ENSG00000196850	chromatin interactions
ENSG00000270170	chromatin interactions

Extended variants
information (count: 4015 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:4015 , 50 per page) page: 1 2 3 4 5 6 7 ... 81

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541309136	chr3:196374953-196374954	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs147465788	chr3:196374986-196374987	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs76926454	chr3:196374992-196374993	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs73084937	chr3:196375049-196375050	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs76393759	chr3:196375071-196375072	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs565210110	chr3:196375073-196375074	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs6807051	chr3:196375090-196375091	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs544419805	chr3:196375132-196375133	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs6766451	chr3:196375140-196375141	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs577169903	chr3:196375145-196375146	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529808749	chr3:196375154-196375155	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs182506727	chr3:196375178-196375179	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs559812775	chr3:196375204-196375205	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs374512931	chr3:196375210-196375211	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs527329747	chr3:196375241-196375242	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144523163	chr3:196375263-196375264	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs551741419	chr3:196375284-196375285	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570830103	chr3:196375300-196375301	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs147394532	chr3:196375320-196375321	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74626344	chr3:196375351-196375352	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs187169080	chr3:196375354-196375355	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560534486	chr3:196375356-196375357	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs112220137	chr3:196375376-196375377	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs139143590	chr3:196375428-196375429	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs572554346	chr3:196375459-196375460	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs539871154	chr3:196375492-196375493	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs558158003	chr3:196375516-196375517	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs560960543	chr3:196375520-196375521	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs549629059	chr3:196375545-196375546	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs544140284	chr3:196375562-196375563	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs571249938	chr3:196375580-196375581	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11710998	chr3:196375582-196375583	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs371509913	chr3:196375638-196375639	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs71161947	chr3:196375646-196375647	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs34359599	chr3:196375660-196375661	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs574948293	chr3:196375661-196375662	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35622343	chr3:196375728-196375729	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs547713123	chr3:196375798-196375799	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs144936493	chr3:196375813-196375814	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs144553947	chr3:196375827-196375828	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs541616885	chr3:196375833-196375834	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs149068497	chr3:196375839-196375840	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs527357326	chr3:196375848-196375849	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs551769993	chr3:196375882-196375883	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs541993408	chr3:196376058-196376059	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs532035109	chr3:196376094-196376095	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs550251445	chr3:196376156-196376157	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs143130808	chr3:196376163-196376164	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs377027161	chr3:196376192-196376193	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs535702731	chr3:196376194-196376195	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Breast cancer	17133270	CNVD
Cancer	16751803	CNVD
abnormal development	18461090	CNVD
Autism	19653912	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD
Prostate cancer	18632612	CNVD
Cervical cancer	21062161	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Austim spectrum disorder	21302340	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	16397240	CNVD
Epilepsy	20736978	CNVD
Mental retardation	20736978	CNVD
speech impairment	20736978	CNVD
Intracranial aneurysm	16715129	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mental retardation	17124404	CNVD
Congenital anomalies of the kidney and urinary tract	20299530	CNVD
Developmental delay	21147756	CNVD
Breast cancer	21509527	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	16760732	CNVD
Schizophrenia	22118685	CNVD
Schizophrenia	22958593	CNVD
Schizophrenia	21285140	CNVD
Schizophrenia	20970697	CNVD
Mental retardation	19951919	CNVD
Autism	20970697	CNVD
Developmental delay	18471269	CNVD
Intellectual disability	22045946	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Uveal melanoma	20484589	CNVD
3q29 microdeletion syndrome	20500065	CNVD
Biliary cancer	20453639	CNVD
3q29 microdeletion syndrome	22283845	CNVD
3q29 microdeletion syndrome	21626679	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Autism	20808228	CNVD

Chromatin state (count:2333 , 50 per page) page: 1 2 3 4 5 6 7 ... 47

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:196367200-196393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:196367600-196376800	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:196367600-196386800	Weak transcription	Gastric	stomach
4	chr3:196367600-196393200	Weak transcription	Brain Substantia Nigra	brain
5	chr3:196367800-196392800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:196367800-196393000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:196367800-196397000	Weak transcription	Fetal Intestine Small	intestine
8	chr3:196368000-196377800	Weak transcription	Esophagus	oesophagus
9	chr3:196368800-196377400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:196369000-196375000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:196369000-196377600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:196369600-196375600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:196369600-196377800	Weak transcription	Left Ventricle	heart
14	chr3:196369600-196388800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:196370000-196377200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:196370200-196381400	Genic enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:196370200-196381800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:196370200-196381800	Genic enhancers	Fetal Thymus	thymus
19	chr3:196370600-196381200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:196370800-196375800	Weak transcription	Thymus	Thymus
21	chr3:196371000-196376200	Genic enhancers	GM12878-XiMat	blood
22	chr3:196371200-196376200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr3:196371200-196377600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:196371200-196377800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:196371200-196383200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:196371400-196390000	Weak transcription	Fetal Muscle Leg	muscle
27	chr3:196371800-196375000	Genic enhancers	Primary hematopoietic stem cells	blood
28	chr3:196371800-196377400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:196372000-196378800	Weak transcription	Right Ventricle	heart
30	chr3:196372200-196376200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr3:196372400-196375800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:196372400-196378800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:196372800-196376200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr3:196372800-196377400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:196372800-196378000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr3:196373000-196375800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:196373000-196376400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr3:196373000-196381000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr3:196373000-196392000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr3:196373200-196376800	Genic enhancers	Monocytes-CD14+_RO01746	blood
41	chr3:196373200-196377400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:196373200-196377600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:196373400-196380200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:196373600-196375000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr3:196373600-196375800	Weak transcription	Primary B cells from cord blood	blood
46	chr3:196373600-196375800	Strong transcription	Primary B cells from peripheral blood	blood
47	chr3:196373600-196377600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr3:196373600-196377600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:196373600-196378200	Weak transcription	Lung	lung
50	chr3:196373600-196383200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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