Variant report

Variant	nsv1008661
Chromosome Location	chr3:60397271-60558331
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:607)
CpG islands
(count:183)
Chromatin interactive
region (count:38)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:607 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:60416988-60417601	K562	blood:	n/a	n/a
2	ARID3A	chr3:60399818-60400018	K562	blood:	n/a	n/a
3	ARID3A	chr3:60438633-60438818	HepG2	liver:	n/a	n/a
4	ARID3A	chr3:60438400-60438401	K562	blood:	n/a	n/a
5	ATF2	chr3:60490547-60490897	GM12878	blood:	n/a	n/a
6	ATF3	chr3:60541358-60541754	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF3	chr3:60399893-60400153	K562	blood:	n/a	n/a
8	BACH1	chr3:60477738-60477770	K562	blood:	n/a	n/a
9	BACH1	chr3:60506210-60506414	K562	blood:	n/a	n/a
10	BATF	chr3:60541461-60541885	GM12878	blood:	n/a	chr3:60541671-60541682
11	BATF	chr3:60538939-60539154	GM12878	blood:	n/a	n/a
12	BATF	chr3:60522246-60522459	GM12878	blood:	n/a	n/a
13	BATF	chr3:60541502-60541804	GM12878	blood:	n/a	chr3:60541671-60541682
14	BATF	chr3:60490607-60490758	GM12878	blood:	n/a	n/a
15	BCL11A	chr3:60541461-60541764	GM12878	blood:	n/a	n/a
16	BCL11A	chr3:60490569-60490827	GM12878	blood:	n/a	n/a
17	BCL11A	chr3:60514439-60514714	GM12878	blood:	n/a	n/a
18	BCL11A	chr3:60490610-60490852	GM12878	blood:	n/a	n/a
19	BCL11A	chr3:60541504-60541905	GM12878	blood:	n/a	n/a
20	BCL3	chr3:60541457-60541820	GM12878	blood:	n/a	n/a
21	BCLAF1	chr3:60541470-60541822	GM12878	blood:	n/a	n/a
22	BHLHE40	chr3:60500213-60500224	K562	blood:	n/a	n/a
23	BHLHE40	chr3:60413096-60413167	K562	blood:	n/a	n/a
24	BHLHE40	chr3:60541385-60541970	GM12878	blood:	n/a	n/a
25	BHLHE40	chr3:60500477-60500907	K562	blood:	n/a	n/a
26	BHLHE40	chr3:60399875-60400162	K562	blood:	n/a	n/a
27	CCNT2	chr3:60417366-60417566	K562	blood:	n/a	n/a
28	CEBPB	chr3:60441935-60442142	HepG2	liver:	n/a	chr3:60441990-60442001 chr3:60441988-60441999 chr3:60441990-60441999 chr3:60441988-60442001
29	CEBPB	chr3:60502858-60503358	K562	blood:	n/a	chr3:60503042-60503059 chr3:60503044-60503055
30	CEBPB	chr3:60473036-60473256	K562	blood:	n/a	chr3:60473083-60473094 chr3:60473083-60473092
31	CEBPB	chr3:60502935-60503162	H1-hESC	embryonic stem cell:	n/a	chr3:60503042-60503059 chr3:60503044-60503055
32	CEBPB	chr3:60410671-60411010	H1-hESC	embryonic stem cell:	n/a	chr3:60410723-60410736 chr3:60410723-60410734
33	CEBPB	chr3:60445566-60445776	K562	blood:	n/a	n/a
34	CEBPB	chr3:60410742-60410905	K562	blood:	n/a	n/a
35	CEBPB	chr3:60556976-60557552	H1-hESC	embryonic stem cell:	n/a	n/a
36	CEBPB	chr3:60502880-60503221	IMR90	lung:	n/a	chr3:60503042-60503059 chr3:60503044-60503055
37	CEBPB	chr3:60438816-60438988	H1-hESC	embryonic stem cell:	n/a	chr3:60438874-60438887
38	CEBPB	chr3:60452412-60452501	K562	blood:	n/a	n/a
39	CEBPB	chr3:60528680-60529009	K562	blood:	n/a	n/a
40	CEBPB	chr3:60409289-60409526	K562	blood:	n/a	chr3:60409395-60409406 chr3:60409394-60409407
41	CEBPB	chr3:60515719-60515918	K562	blood:	n/a	n/a
42	CEBPB	chr3:60404329-60404551	HepG2	liver:	n/a	chr3:60404424-60404437 chr3:60404425-60404436
43	CEBPB	chr3:60502891-60503236	HepG2	liver:	n/a	chr3:60503042-60503059 chr3:60503044-60503055
44	CEBPB	chr3:60404313-60404601	K562	blood:	n/a	chr3:60404424-60404437 chr3:60404425-60404436
45	CEBPB	chr3:60446915-60447183	K562	blood:	n/a	n/a
46	CEBPB	chr3:60404332-60404470	H1-hESC	embryonic stem cell:	n/a	chr3:60404424-60404437 chr3:60404425-60404436
47	CEBPB	chr3:60410695-60411015	K562	blood:	n/a	chr3:60410723-60410736 chr3:60410723-60410734
48	CEBPB	chr3:60492999-60493149	K562	blood:	n/a	n/a
49	CEBPB	chr3:60438578-60438866	HepG2	liver:	n/a	n/a
50	CEBPB	chr3:60541559-60541835	GM12878	blood:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:60534659-60534709	PANC-1	pancreas:	n/a
2	chr3:60534659-60534709	HepG2	liver:	n/a
3	chr3:60534659-60534709	CMK	blood:	n/a
4	chr3:60420416-60420466	HepG2	liver:	n/a
5	chr3:60534659-60534709	Caco-2	colon:	n/a
6	chr3:60534659-60534709	GM12892	blood:	n/a
7	chr3:60541935-60541985	GM12878	blood:	n/a
8	chr3:60420416-60420466	HCPEpiC	choroid plexus:	n/a
9	chr3:60534659-60534709	HIPEpiC	eye:	n/a
10	chr3:60534659-60534709	NH-A	brain:	n/a
11	chr3:60420416-60420466	H1-hESC	embryonic stem cell:	embryo
12	chr3:60541935-60541985	HCM	heart:	n/a
13	chr3:60420416-60420466	HRE	kidney:	n/a
14	chr3:60420416-60420466	K562	blood:	n/a
15	chr3:60541935-60541985	HRE	kidney:	n/a
16	chr3:60541935-60541985	GM06990	blood:	n/a
17	chr3:60541935-60541985	HNPCEpiC	eye:	n/a
18	chr3:60420416-60420466	GM12878	blood:	n/a
19	chr3:60541935-60541985	GM12892	blood:	n/a
20	chr3:60420416-60420466	ovcar-3	ovarian:	n/a
21	chr3:60534659-60534709	BJ	skin:	n/a
22	chr3:60541935-60541985	AG09319	gingival:	n/a
23	chr3:60534659-60534709	NHBE	bronchial:	n/a
24	chr3:60541935-60541985	AG10803	skin:	n/a
25	chr3:60534659-60534709	HCF	heart:	n/a
26	chr3:60420416-60420466	HEK293	kidney:	embryo
27	chr3:60534659-60534709	GM19239	blood:	n/a
28	chr3:60420416-60420466	RPTEC	kidney:	n/a
29	chr3:60534659-60534709	A549	lung:	n/a
30	chr3:60420416-60420466	HCT-116	colon:	n/a
31	chr3:60534659-60534709	HAEpiC	amniotic membrane:	n/a
32	chr3:60420416-60420466	HCM	heart:	n/a
33	chr3:60420416-60420466	AG09309	skin:	n/a
34	chr3:60534659-60534709	AG09319	gingival:	n/a
35	chr3:60420416-60420466	MCF-7	breast:	n/a
36	chr3:60541935-60541985	AoSMC	blood vessel:	n/a
37	chr3:60420416-60420466	HUVEC	blood vessel:	n/a
38	chr3:60420416-60420466	AG04449	skin:	fetal
39	chr3:60534659-60534709	ProgFib	skin:	n/a
40	chr3:60541935-60541985	HIPEpiC	eye:	n/a
41	chr3:60420416-60420466	GM12892	blood:	n/a
42	chr3:60420416-60420466	SK-N-SH_RA	brain:	n/a
43	chr3:60541935-60541985	GM19239	blood:	n/a
44	chr3:60541935-60541985	BE2_C	brain:	n/a
45	chr3:60534659-60534709	SK-N-SH_RA	brain:	n/a
46	chr3:60534659-60534709	GM12891	blood:	n/a
47	chr3:60420416-60420466	GM12891	blood:	n/a
48	chr3:60541935-60541985	PANC-1	pancreas:	n/a
49	chr3:60534659-60534709	AoSMC	blood vessel:	n/a
50	chr3:60420416-60420466	AoSMC	blood vessel:	n/a

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:60502053..60505036-chr3:60509426..60512103,2	K562	blood:
2	chr3:60483853..60486464-chr3:60489187..60492049,2	K562	blood:
3	chr3:60509060..60510930-chr3:60511428..60512938,2	K562	blood:
4	chr3:60187999..60188742-chr3:60417102..60417817,2	MCF-7	breast:
5	chr3:60488135..60490633-chr3:60491194..60494068,2	K562	blood:
6	chr3:60492215..60494697-chr3:60503496..60505338,2	K562	blood:
7	chr3:60467604..60470651-chr3:60470930..60473335,3	K562	blood:
8	chr3:60492215..60494697-chr3:60503496..60505338,2	K562	blood:
9	chr3:60503536..60506034-chr3:60508761..60510926,2	K562	blood:
10	chr3:60468425..60470651-chr3:60470930..60473335,2	K562	blood:
11	chr3:60483853..60486464-chr3:60489187..60492049,2	K562	blood:
12	chr3:60475674..60478079-chr3:60479619..60482202,2	K562	blood:
13	chr3:60476221..60479058-chr3:60482642..60484706,2	K562	blood:
14	chr3:60509060..60510930-chr3:60511428..60512938,2	K562	blood:
15	chr3:60468425..60470651-chr3:60470930..60473335,2	K562	blood:
16	chr3:60404994..60406496-chr3:60413046..60414548,2	K562	blood:
17	chr3:60418409..60420748-chr3:60421749..60423425,2	MCF-7	breast:
18	chr3:60532780..60534867-chr3:60539940..60541452,2	K562	blood:
19	chr3:60486499..60489215-chr3:60499142..60502130,2	K562	blood:
20	chr3:60418409..60420748-chr3:60421749..60423425,2	MCF-7	breast:
21	chr3:60502053..60505036-chr3:60509426..60512103,2	K562	blood:
22	chr3:60476221..60479058-chr3:60482642..60484706,2	K562	blood:
23	chr3:60467604..60470651-chr3:60470930..60473335,3	K562	blood:
24	chr3:60435518..60437406-chr3:60439396..60441037,2	K562	blood:
25	chr3:60435518..60437406-chr3:60439396..60441037,2	K562	blood:
26	chr3:60540686..60542357-chr3:60544396..60547360,2	MCF-7	breast:
27	chr3:60486499..60489215-chr3:60499142..60502130,2	K562	blood:
28	chr3:60500352..60502884-chr3:60536251..60537952,2	K562	blood:
29	chr3:60503536..60506034-chr3:60508761..60510926,2	K562	blood:
30	chr3:60475674..60478079-chr3:60479619..60482202,2	K562	blood:
31	chr3:60488135..60490633-chr3:60491194..60494068,2	K562	blood:
32	chr3:60506754..60508368-chr3:60516500..60519417,2	K562	blood:
33	chr3:60540686..60542357-chr3:60544396..60547360,2	MCF-7	breast:
34	chr3:60404994..60406496-chr3:60413046..60414548,2	K562	blood:
35	chr3:60506754..60508368-chr3:60516500..60519417,2	K562	blood:
36	chr3:60532780..60534867-chr3:60539940..60541452,2	K562	blood:
37	chr3:60263321..60265309-chr3:60503721..60505576,2	K562	blood:
38	chr3:60500352..60502884-chr3:60536251..60537952,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FEZF2-9	chr3:60521543-60522712	NONHSAT090160

No data

Variant related genes	Relation type
FHIT	TF binding region
FHIT	CpG island

Extended variants
information (count: 5672 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:5672 , 50 per page) page: 1 2 3 4 5 6 7 ... 114

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550593180	chr3:60397326-60397327	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs34116820	chr3:60397360-60397361	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186416827	chr3:60397388-60397389	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs76207534	chr3:60397408-60397409	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs536374408	chr3:60397436-60397437	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs554269720	chr3:60397459-60397460	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs369234765	chr3:60397474-60397475	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373387801	chr3:60397483-60397484	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566693224	chr3:60397486-60397487	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs566620611	chr3:60397507-60397508	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs377575404	chr3:60397520-60397521	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377447263	chr3:60397524-60397525	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs533729513	chr3:60397539-60397540	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs534136125	chr3:60397548-60397549	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs556747915	chr3:60397555-60397556	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs190683367	chr3:60397557-60397558	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544269138	chr3:60397598-60397599	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs556552218	chr3:60397659-60397660	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574813189	chr3:60397674-60397675	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs542315452	chr3:60397742-60397743	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs560584201	chr3:60397747-60397748	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs370182740	chr3:60397790-60397791	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs138615444	chr3:60397810-60397811	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs540430366	chr3:60397817-60397818	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs565169955	chr3:60397831-60397832	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs182873185	chr3:60397847-60397848	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs532473111	chr3:60397849-60397850	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs186470093	chr3:60397855-60397856	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs34417630	chr3:60397896-60397897	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs145474014	chr3:60397900-60397901	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547842691	chr3:60397915-60397916	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs34264470	chr3:60397925-60397926	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs555469429	chr3:60397928-60397929	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs79848785	chr3:60397947-60397948	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs17063018	chr3:60397974-60397975	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs367729525	chr3:60397986-60397987	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs538556050	chr3:60398079-60398080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs556598349	chr3:60398092-60398093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs149537798	chr3:60398108-60398109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs542252408	chr3:60398128-60398129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs554260605	chr3:60398133-60398134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs572617445	chr3:60398137-60398138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs242196	chr3:60398156-60398157	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs191288629	chr3:60398157-60398158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs368302771	chr3:60398178-60398179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532230252	chr3:60398208-60398209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs202172942	chr3:60398216-60398217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs182922650	chr3:60398253-60398254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556494615	chr3:60398282-60398283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs17063024	chr3:60398302-60398303	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Acute myeloid leukemia	20729466	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16608533	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	19490591	CNVD
Autism	18414403	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-small cell lung cancer	20864512	CNVD
Metastatic melanoma	17975146	CNVD
Cancer	18162546	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Urothelial cell carcinoma	18451213	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Colorectal cancer	16272173	CNVD
Mental retardation	17847001	CNVD
Neuroticism	17667963	CNVD
Squamous cell cancer	19047905	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Cancer	20164920	CNVD
Schizophrenia	23813976	CNVD
Autism	22102821	CNVD
Prostate cancer	19363497	CNVD
Malaria	21533027	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Colorectal cancer	21518781	CNVD
Esophageal cancer	21518781	CNVD
Cancer	20164919	CNVD
Schizophrenia	20967226	CNVD
Burkitt''s lymphoma	20823134	CNVD
Burkitt''s lymphoma	19759907	CNVD
Gastric cancer	22315472	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:338 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60385000-60399800	Weak transcription	K562	blood
2	chr3:60394000-60397400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:60394200-60397400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:60394800-60397400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:60394800-60397400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:60396200-60397400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:60397200-60397400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:60397200-60397400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:60397200-60398000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:60397200-60398000	Enhancers	Fetal Lung	lung
11	chr3:60397400-60400000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:60397600-60398000	Enhancers	Brain Germinal Matrix	brain
13	chr3:60398000-60399000	Weak transcription	Fetal Lung	lung
14	chr3:60398000-60403400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:60399000-60400200	Enhancers	Fetal Lung	lung
16	chr3:60399800-60400200	Enhancers	K562	blood
17	chr3:60400200-60403000	Weak transcription	Fetal Lung	lung
18	chr3:60403200-60403400	Enhancers	Fetal Lung	lung
19	chr3:60403400-60403600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:60404800-60405000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:60406600-60407600	Enhancers	Liver	Liver
22	chr3:60407600-60408000	Flanking Active TSS	Liver	Liver
23	chr3:60407600-60408200	Enhancers	Gastric	stomach
24	chr3:60407800-60408200	Enhancers	Small Intestine	intestine
25	chr3:60407800-60410600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:60408000-60408600	Enhancers	Liver	Liver
27	chr3:60408600-60413800	Weak transcription	Liver	Liver
28	chr3:60410600-60411000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr3:60410800-60411000	Enhancers	H1 Cell Line	embryonic stem cell
30	chr3:60410800-60411000	Enhancers	K562	blood
31	chr3:60411000-60416400	Weak transcription	K562	blood
32	chr3:60411600-60411800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr3:60413800-60414200	Enhancers	Liver	Liver
34	chr3:60415000-60417600	Enhancers	Primary T cells from cord blood	blood
35	chr3:60415200-60415400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr3:60415200-60415800	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr3:60415200-60415800	Enhancers	Psoas Muscle	Psoas
38	chr3:60415200-60416000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr3:60415200-60417200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr3:60415200-60417800	Enhancers	Fetal Thymus	thymus
41	chr3:60415600-60416600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr3:60415600-60416800	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr3:60415600-60417600	Enhancers	Thymus	Thymus
44	chr3:60415800-60416800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr3:60416400-60417600	Enhancers	Fetal Heart	heart
46	chr3:60416400-60417800	Enhancers	K562	blood
47	chr3:60416600-60417000	Enhancers	Primary T cells fromperipheralblood	blood
48	chr3:60417400-60417600	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr3:60419600-60420200	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr3:60419600-60420400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links