Variant report

Variant	nsv1008902
Chromosome Location	chr1:71417926-71488139
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:447)
CpG islands
(count:122)
Chromatin interactive
region (count:20)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:447 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:71481128-71481217	K562	blood:	n/a	n/a
2	ARID3A	chr1:71468699-71468724	K562	blood:	n/a	n/a
3	ARID3A	chr1:71472265-71472284	K562	blood:	n/a	n/a
4	ARID3A	chr1:71460522-71460848	K562	blood:	n/a	n/a
5	ARID3A	chr1:71436198-71436440	K562	blood:	n/a	n/a
6	ATF1	chr1:71451500-71451902	K562	blood:	n/a	n/a
7	ATF1	chr1:71445230-71445327	K562	blood:	n/a	n/a
8	ATF1	chr1:71427045-71427515	K562	blood:	n/a	n/a
9	BACH1	chr1:71468156-71468161	K562	blood:	n/a	n/a
10	BHLHE40	chr1:71436134-71436325	K562	blood:	n/a	n/a
11	BHLHE40	chr1:71427278-71427427	K562	blood:	n/a	n/a
12	BHLHE40	chr1:71465554-71465707	K562	blood:	n/a	n/a
13	BHLHE40	chr1:71485053-71485253	K562	blood:	n/a	n/a
14	BHLHE40	chr1:71480894-71480941	K562	blood:	n/a	n/a
15	CCNT2	chr1:71474825-71475012	K562	blood:	n/a	n/a
16	CEBPB	chr1:71470760-71470839	HepG2	liver:	n/a	chr1:71470810-71470821
17	CEBPB	chr1:71423310-71423611	IMR90	lung:	n/a	n/a
18	CEBPB	chr1:71477204-71477504	K562	blood:	n/a	chr1:71477360-71477371
19	CEBPB	chr1:71422052-71422132	K562	blood:	n/a	chr1:71422081-71422092
20	CEBPB	chr1:71423305-71423526	K562	blood:	n/a	n/a
21	CEBPB	chr1:71469996-71470196	K562	blood:	n/a	chr1:71470127-71470140 chr1:71470129-71470140
22	CEBPB	chr1:71477312-71477504	HepG2	liver:	n/a	chr1:71477360-71477371
23	CEBPB	chr1:71444470-71444536	H1-hESC	embryonic stem cell:	n/a	n/a
24	CEBPB	chr1:71467360-71467695	K562	blood:	n/a	chr1:71467516-71467527 chr1:71467518-71467529 chr1:71467516-71467529
25	CEBPB	chr1:71467389-71467679	H1-hESC	embryonic stem cell:	n/a	chr1:71467516-71467527 chr1:71467518-71467529 chr1:71467516-71467529
26	CEBPB	chr1:71458228-71458549	K562	blood:	n/a	chr1:71458394-71458405 chr1:71458394-71458407
27	CEBPB	chr1:71483442-71483555	IMR90	lung:	n/a	n/a
28	CEBPB	chr1:71485706-71485857	A549	lung:	n/a	chr1:71485756-71485767
29	CEBPB	chr1:71467353-71467636	A549	lung:	n/a	chr1:71467516-71467527 chr1:71467518-71467529 chr1:71467516-71467529
30	CEBPB	chr1:71467358-71467677	IMR90	lung:	n/a	chr1:71467516-71467527 chr1:71467518-71467529 chr1:71467516-71467529
31	CEBPB	chr1:71467330-71467690	HepG2	liver:	n/a	chr1:71467516-71467527 chr1:71467518-71467529 chr1:71467516-71467529
32	CEBPB	chr1:71485618-71485862	IMR90	lung:	n/a	chr1:71485756-71485767
33	CEBPB	chr1:71474287-71474494	K562	blood:	n/a	n/a
34	CEBPB	chr1:71458240-71458524	HepG2	liver:	n/a	chr1:71458394-71458405 chr1:71458394-71458407
35	CEBPB	chr1:71421987-71422201	HepG2	liver:	n/a	chr1:71422081-71422092
36	CEBPD	chr1:71438637-71439063	K562	blood:	n/a	n/a
37	CTCF	chr1:71436245-71436271	HUVEC	blood vessel:	n/a	n/a
38	CTCF	chr1:71431840-71431990	GM12878	blood:	n/a	n/a
39	CTCF	chr1:71431780-71431930	HEEpiC	esophagus:	n/a	n/a
40	CTCF	chr1:71431780-71431930	NHDF-neo	bronchial:	n/a	n/a
41	CTCF	chr1:71431820-71431970	HCPEpiC	choroid plexus:	n/a	n/a
42	CTCF	chr1:71431800-71431950	K562	blood:	n/a	n/a
43	CTCF	chr1:71432140-71432290	HEK293	kidney:	n/a	n/a
44	CTCF	chr1:71429217-71429368	GM12892	blood:	n/a	n/a
45	CTCF	chr1:71432840-71432990	GM12873	blood:	n/a	n/a
46	CTCF	chr1:71429232-71429368	Kidney_OC	kidney:	n/a	n/a
47	CTCF	chr1:71429180-71429330	HCT-116	colon:	n/a	n/a
48	CTCF	chr1:71431800-71431950	HMF	breast:	n/a	n/a
49	CTCF	chr1:71431822-71431974	GM10266	blood:	n/a	n/a
50	CTCF	chr1:71429167-71429344	H1-hESC	embryonic stem cell:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:71418388-71418438	HCM	heart:	n/a
2	chr1:71418388-71418438	HepG2	liver:	n/a
3	chr1:71472738-71472788	HCT-116	colon:	n/a
4	chr1:71472738-71472788	NT2-D1	testis:	n/a
5	chr1:71418388-71418438	HPAEpiC	pulmonary alveolar:	n/a
6	chr1:71472738-71472788	AG04450	lung:	fetal
7	chr1:71418388-71418438	HRPEpiC	eye:	n/a
8	chr1:71418388-71418438	Caco-2	colon:	n/a
9	chr1:71472738-71472788	GM06990	blood:	n/a
10	chr1:71418388-71418438	BE2_C	brain:	n/a
11	chr1:71472738-71472788	SK-N-SH	brain:	n/a
12	chr1:71418388-71418438	HCPEpiC	choroid plexus:	n/a
13	chr1:71472738-71472788	GM19239	blood:	n/a
14	chr1:71472738-71472788	NH-A	brain:	n/a
15	chr1:71472738-71472788	ECC-1	luminal epithelium:	n/a
16	chr1:71418388-71418438	ECC-1	luminal epithelium:	n/a
17	chr1:71472738-71472788	HAEpiC	amniotic membrane:	n/a
18	chr1:71472738-71472788	BE2_C	brain:	n/a
19	chr1:71418388-71418438	GM12892	blood:	n/a
20	chr1:71418388-71418438	HEK293	kidney:	embryo
21	chr1:71472738-71472788	T-47D	breast:	n/a
22	chr1:71472738-71472788	GM12892	blood:	n/a
23	chr1:71418388-71418438	AG04450	lung:	fetal
24	chr1:71418388-71418438	MCF10A-Er-Src	breast:	n/a
25	chr1:71418388-71418438	AoSMC	blood vessel:	n/a
26	chr1:71472738-71472788	A549	lung:	n/a
27	chr1:71418388-71418438	HMEC	breast:	n/a
28	chr1:71472738-71472788	HIPEpiC	eye:	n/a
29	chr1:71472738-71472788	Hela-S3	cervix:	n/a
30	chr1:71418388-71418438	Hepatocyte	liver:	n/a
31	chr1:71472738-71472788	ProgFib	skin:	n/a
32	chr1:71472738-71472788	LNCaP	prostate:	n/a
33	chr1:71418388-71418438	K562	blood:	n/a
34	chr1:71472738-71472788	MCF-7	breast:	n/a
35	chr1:71472738-71472788	U87	brain:	n/a
36	chr1:71418388-71418438	GM12891	blood:	n/a
37	chr1:71418388-71418438	NB4	blood:	n/a
38	chr1:71418388-71418438	A549	lung:	n/a
39	chr1:71472738-71472788	Jurkat	blood:	n/a
40	chr1:71418388-71418438	LNCaP	prostate:	n/a
41	chr1:71472738-71472788	AoSMC	blood vessel:	n/a
42	chr1:71418388-71418438	AG10803	skin:	n/a
43	chr1:71418388-71418438	HRCEpiC	kidney:	n/a
44	chr1:71472738-71472788	RPTEC	kidney:	n/a
45	chr1:71472738-71472788	IMR90	lung:	fetal
46	chr1:71418388-71418438	BJ	skin:	n/a
47	chr1:71418388-71418438	HAEpiC	amniotic membrane:	n/a
48	chr1:71418388-71418438	GM12878	blood:	n/a
49	chr1:71418388-71418438	IMR90	lung:	fetal
50	chr1:71472738-71472788	K562	blood:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:71475910..71477737-chr1:71480653..71482581,2	MCF-7	breast:
2	chr1:71427617..71429337-chr1:71437684..71440303,2	K562	blood:
3	chr1:71440403..71443013-chr1:71443324..71446288,2	K562	blood:
4	chr1:71150765..71151639-chr1:71429287..71429792,2	MCF-7	breast:
5	chr1:71486485..71490048-chr1:71491402..71493576,3	K562	blood:
6	chr1:71440403..71443013-chr1:71443324..71446288,2	K562	blood:
7	chr1:70975940..70976451-chr1:71428828..71429462,2	MCF-7	breast:
8	chr1:71443738..71447073-chr1:71448870..71451609,5	K562	blood:
9	chr1:71484257..71486555-chr1:71489083..71490597,2	MCF-7	breast:
10	chr1:71443738..71447073-chr1:71448870..71451609,5	K562	blood:
11	chr1:71442791..71448002-chr1:71448870..71452211,5	K562	blood:
12	chr1:71473756..71476164-chr1:71480981..71482752,2	K562	blood:
13	chr1:71423003..71424991-chr1:71446277..71448535,2	K562	blood:
14	chr1:71423003..71424991-chr1:71446277..71448535,2	K562	blood:
15	chr1:71473756..71476164-chr1:71480981..71482752,2	K562	blood:
16	chr1:71442791..71448002-chr1:71448870..71452211,5	K562	blood:
17	chr1:71475910..71477737-chr1:71480653..71482581,2	MCF-7	breast:
18	chr1:71411854..71414751-chr1:71416719..71419463,2	K562	blood:
19	chr1:71427617..71429337-chr1:71437684..71440303,2	K562	blood:
20	chr1:71467023..71468927-chr1:71512007..71514052,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTH-14	chr1:71475401-71475924	l_71_chr1:71319635-71475982_testes
2	lnc-ZRANB2-2	chr1:71472542-71473814	NONHSAT003875
3	lnc-CTH-12	chr1:71430529-71431707	NONHSAT003873
4	lnc-CTH-14	chr1:71461328-71461385	l_71_chr1:71319635-71475982_testes
5	lnc-CTH-12	chr1:71426588-71426941	NONHSAT003873
6	lnc-CTH-14	chr1:71475926-71475982	l_71_chr1:71319635-71475982_testes
7	lnc-ZRANB2-3	chr1:71471537-71472185	ENSG00000269933.1

No data

Variant related genes	Relation type
ENSG00000269933	TF binding region
ENSG00000269933	CpG island
ENSG00000050628	chromatin interactions
ENSG00000235782	chromatin interactions

Extended variants
information (count: 2632 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:2632 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs368395403	chr1:71417945-71417946	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs558191399	chr1:71417953-71417954	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs10701283	chr1:71417959-71417960	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs66556405	chr1:71417960-71417961	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs386367297	chr1:71417962-71417963	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs10688711	chr1:71417965-71417966	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs565479590	chr1:71418005-71418006	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs534316055	chr1:71418059-71418060	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs148566520	chr1:71418141-71418142	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs546836593	chr1:71418146-71418147	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs543667097	chr1:71418148-71418149	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs190841828	chr1:71418193-71418194	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs74089178	chr1:71418202-71418203	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs577064927	chr1:71418263-71418264	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs546027985	chr1:71418265-71418266	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs565367313	chr1:71418334-71418335	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs527831584	chr1:71418338-71418339	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs34531883	chr1:71418345-71418346	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs5700	chr1:71418367-71418368	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs182299038	chr1:71418400-71418401	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs550404726	chr1:71418403-71418404	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs186738024	chr1:71418438-71418439	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs5699	chr1:71418452-71418453	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs535417431	chr1:71418476-71418477	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs79910424	chr1:71418525-71418526	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs111594652	chr1:71418532-71418533	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs5698	chr1:71418555-71418556	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs550727417	chr1:71418556-71418557	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs565415760	chr1:71418572-71418573	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs202001566	chr1:71418603-71418604	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs189587400	chr1:71418634-71418635	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs568020055	chr1:71418640-71418641	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs536644930	chr1:71418641-71418642	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs369540225	chr1:71418660-71418661	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs568967213	chr1:71418662-71418663	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs375181734	chr1:71418663-71418664	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs202177071	chr1:71418672-71418673	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs141688168	chr1:71418711-71418712	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs143165473	chr1:71418718-71418719	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs141042904	chr1:71418742-71418743	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs183310532	chr1:71418747-71418748	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs375226553	chr1:71418788-71418789	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs572552573	chr1:71418800-71418801	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs535409346	chr1:71418801-71418802	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs541488948	chr1:71418863-71418864	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs144877701	chr1:71418914-71418915	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs559206777	chr1:71418926-71418927	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs41287924	chr1:71418965-71418966	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs112255885	chr1:71419007-71419008	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs187800263	chr1:71419043-71419044	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17133270	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
abnormal development	18461090	CNVD
Ewing''s sarcoma	17952124	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Poland''s syndrome	22110015	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21922591	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Effusion lymphoma	18079361	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cancer	20164920	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:152 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71415800-71422200	Weak transcription	Adipose Nuclei	Adipose
2	chr1:71416000-71419600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:71418400-71419200	Enhancers	Aorta	Aorta
4	chr1:71419600-71421000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:71421000-71421400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:71421400-71422800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:71422200-71422600	Enhancers	Adipose Nuclei	Adipose
8	chr1:71422600-71429600	Weak transcription	Adipose Nuclei	Adipose
9	chr1:71422800-71423600	Enhancers	Fetal Heart	heart
10	chr1:71422800-71425800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:71423400-71423800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:71425800-71426000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:71426000-71436800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:71429600-71430200	Enhancers	Adipose Nuclei	Adipose
15	chr1:71430200-71444200	Weak transcription	Adipose Nuclei	Adipose
16	chr1:71433600-71433800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr1:71436800-71437000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:71438600-71440600	Enhancers	Fetal Brain Male	brain
19	chr1:71440200-71440400	Enhancers	Fetal Brain Female	brain
20	chr1:71440600-71441600	Weak transcription	Fetal Brain Male	brain
21	chr1:71440800-71441800	Weak transcription	Fetal Brain Female	brain
22	chr1:71441600-71444800	Enhancers	Fetal Brain Male	brain
23	chr1:71441800-71442400	Enhancers	Fetal Brain Female	brain
24	chr1:71443000-71443200	Enhancers	Gastric	stomach
25	chr1:71443000-71443600	Enhancers	Pancreas	Pancrea
26	chr1:71443200-71456800	Weak transcription	Gastric	stomach
27	chr1:71443600-71446000	Weak transcription	Pancreas	Pancrea
28	chr1:71444000-71444600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr1:71444000-71445600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:71444200-71444600	Enhancers	Fetal Heart	heart
31	chr1:71444200-71446200	Enhancers	Primary hematopoietic stem cells	blood
32	chr1:71444200-71446600	Enhancers	Adipose Nuclei	Adipose
33	chr1:71444200-71447000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr1:71444400-71444600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:71444400-71444800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:71444400-71445400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr1:71444600-71445200	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr1:71444600-71446000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:71444600-71446600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr1:71444800-71445600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:71445000-71446200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr1:71445200-71445400	Enhancers	Colon Smooth Muscle	Colon
43	chr1:71445200-71446200	Enhancers	K562	blood
44	chr1:71445200-71464200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr1:71445600-71446200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr1:71446000-71446200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:71446000-71446200	Enhancers	Colon Smooth Muscle	Colon
48	chr1:71446000-71446600	Enhancers	H9 Cell Line	embryonic stem cell
49	chr1:71446000-71446600	Enhancers	Pancreas	Pancrea
50	chr1:71446200-71450600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links