Variant report

Variant	nsv1008993
Chromosome Location	chr1:174180019-174331358
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1359)
CpG islands
(count:183)
Chromatin interactive
region (count:87)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1359 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:174186896-174187175	HepG2	liver:	n/a	n/a
2	ARID3A	chr1:174199624-174199775	K562	blood:	n/a	n/a
3	ARID3A	chr1:174186888-174187188	K562	blood:	n/a	n/a
4	ARID3A	chr1:174239214-174239484	HepG2	liver:	n/a	n/a
5	ARID3A	chr1:174231871-174232199	HepG2	liver:	n/a	n/a
6	ARID3A	chr1:174208511-174209005	HepG2	liver:	n/a	n/a
7	ARID3A	chr1:174243609-174243996	HepG2	liver:	n/a	n/a
8	ARID3A	chr1:174227171-174227530	HepG2	liver:	n/a	n/a
9	ARID3A	chr1:174231891-174232149	K562	blood:	n/a	n/a
10	ARID3A	chr1:174227162-174227507	K562	blood:	n/a	n/a
11	ARID3A	chr1:174235526-174236877	HepG2	liver:	n/a	n/a
12	ATF1	chr1:174201924-174202155	K562	blood:	n/a	n/a
13	ATF1	chr1:174277912-174277913	K562	blood:	n/a	n/a
14	ATF1	chr1:174235618-174235768	K562	blood:	n/a	n/a
15	ATF1	chr1:174263197-174263318	K562	blood:	n/a	n/a
16	ATF1	chr1:174199566-174199927	K562	blood:	n/a	n/a
17	ATF2	chr1:174245148-174245601	GM12878	blood:	n/a	n/a
18	BACH1	chr1:174270567-174271092	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr1:174181908-174182084	K562	blood:	n/a	n/a
20	BACH1	chr1:174186513-174186786	K562	blood:	n/a	n/a
21	BACH1	chr1:174180646-174180687	K562	blood:	n/a	n/a
22	BACH1	chr1:174192832-174192848	K562	blood:	n/a	n/a
23	BATF	chr1:174191294-174191553	GM12878	blood:	n/a	chr1:174191451-174191462 chr1:174191348-174191357
24	BCLAF1	chr1:174245097-174245620	GM12878	blood:	n/a	n/a
25	BCLAF1	chr1:174187903-174188413	GM12878	blood:	n/a	n/a
26	BHLHE40	chr1:174199609-174199894	K562	blood:	n/a	n/a
27	BHLHE40	chr1:174186995-174187176	GM12878	blood:	n/a	n/a
28	BHLHE40	chr1:174201914-174202107	K562	blood:	n/a	n/a
29	CBX3	chr1:174284427-174284759	K562	blood:	n/a	n/a
30	CBX3	chr1:174201841-174202179	K562	blood:	n/a	n/a
31	CBX3	chr1:174289992-174290425	K562	blood:	n/a	n/a
32	CBX3	chr1:174191587-174192040	K562	blood:	n/a	n/a
33	CBX3	chr1:174284403-174284874	K562	blood:	n/a	n/a
34	CBX3	chr1:174270523-174270977	K562	blood:	n/a	n/a
35	CBX3	chr1:174193711-174194115	K562	blood:	n/a	n/a
36	CBX3	chr1:174295373-174295772	K562	blood:	n/a	n/a
37	CBX3	chr1:174193784-174194059	K562	blood:	n/a	n/a
38	CBX3	chr1:174290094-174290435	K562	blood:	n/a	n/a
39	CCNT2	chr1:174226984-174227184	K562	blood:	n/a	n/a
40	CEBPB	chr1:174265469-174265836	IMR90	lung:	n/a	chr1:174265652-174265661 chr1:174265652-174265661 chr1:174265650-174265661 chr1:174265652-174265661
41	CEBPB	chr1:174186960-174187382	A549	lung:	n/a	chr1:174187235-174187248 chr1:174187237-174187246 chr1:174187235-174187246 chr1:174187236-174187247
42	CEBPB	chr1:174191370-174191654	K562	blood:	n/a	n/a
43	CEBPB	chr1:174187036-174187332	MCF-7	breast:	n/a	chr1:174187235-174187248 chr1:174187237-174187246 chr1:174187235-174187246 chr1:174187236-174187247
44	CEBPB	chr1:174186952-174187428	K562	blood:	n/a	chr1:174187235-174187248 chr1:174187237-174187246 chr1:174187235-174187246 chr1:174187236-174187247
45	CEBPB	chr1:174265481-174265826	Hela-S3	cervix:	n/a	chr1:174265652-174265661 chr1:174265652-174265661 chr1:174265650-174265661 chr1:174265652-174265661
46	CEBPB	chr1:174243605-174243895	HepG2	liver:	n/a	chr1:174243725-174243736
47	CEBPB	chr1:174186840-174187371	K562	blood:	n/a	chr1:174187235-174187248 chr1:174187237-174187246 chr1:174187235-174187246 chr1:174187236-174187247
48	CEBPB	chr1:174270541-174270847	H1-hESC	embryonic stem cell:	n/a	n/a
49	CEBPB	chr1:174277885-174278089	K562	blood:	n/a	n/a
50	CEBPB	chr1:174191354-174191638	HepG2	liver:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:174186816-174186866	NHBE	bronchial:	n/a
2	chr1:174186816-174186866	AG09309	skin:	n/a
3	chr1:174186816-174186866	MCF10A-Er-Src	breast:	n/a
4	chr1:174186816-174186866	CMK	blood:	n/a
5	chr1:174208162-174208212	NHDF-neo	bronchial:	n/a
6	chr1:174186816-174186866	RPTEC	kidney:	n/a
7	chr1:174208162-174208212	SAEC	small airway:	n/a
8	chr1:174319673-174319723	HRCEpiC	kidney:	n/a
9	chr1:174186816-174186866	ovcar-3	ovarian:	n/a
10	chr1:174186816-174186866	Caco-2	colon:	n/a
11	chr1:174319673-174319723	HepG2	liver:	n/a
12	chr1:174208162-174208212	GM06990	blood:	n/a
13	chr1:174319673-174319723	ECC-1	luminal epithelium:	n/a
14	chr1:174319673-174319723	HCM	heart:	n/a
15	chr1:174186816-174186866	AG09319	gingival:	n/a
16	chr1:174319673-174319723	U87	brain:	n/a
17	chr1:174186816-174186866	BE2_C	brain:	n/a
18	chr1:174319673-174319723	SKMC	muscle:	n/a
19	chr1:174319673-174319723	SAEC	small airway:	n/a
20	chr1:174208162-174208212	SK-N-SH	brain:	n/a
21	chr1:174208162-174208212	ECC-1	luminal epithelium:	n/a
22	chr1:174208162-174208212	HEEpiC	esophagus:	n/a
23	chr1:174186816-174186866	K562	blood:	n/a
24	chr1:174186816-174186866	Hepatocyte	liver:	n/a
25	chr1:174319673-174319723	NHDF-neo	bronchial:	n/a
26	chr1:174208162-174208212	Caco-2	colon:	n/a
27	chr1:174208162-174208212	AG04450	lung:	fetal
28	chr1:174319673-174319723	GM12891	blood:	n/a
29	chr1:174186816-174186866	HCT-116	colon:	n/a
30	chr1:174186816-174186866	HRE	kidney:	n/a
31	chr1:174208162-174208212	A549	lung:	n/a
32	chr1:174319673-174319723	AG04449	skin:	fetal
33	chr1:174208162-174208212	NB4	blood:	n/a
34	chr1:174208162-174208212	PrEC	prostate:	n/a
35	chr1:174319673-174319723	HIPEpiC	eye:	n/a
36	chr1:174319673-174319723	ovcar-3	ovarian:	n/a
37	chr1:174208162-174208212	HCT-116	colon:	n/a
38	chr1:174319673-174319723	HNPCEpiC	eye:	n/a
39	chr1:174319673-174319723	BJ	skin:	n/a
40	chr1:174208162-174208212	ProgFib	skin:	n/a
41	chr1:174208162-174208212	SK-N-MC	brain:	n/a
42	chr1:174319673-174319723	GM12892	blood:	n/a
43	chr1:174186816-174186866	MCF-7	breast:	n/a
44	chr1:174186816-174186866	H1-hESC	embryonic stem cell:	embryo
45	chr1:174208162-174208212	HEK293	kidney:	embryo
46	chr1:174208162-174208212	GM19239	blood:	n/a
47	chr1:174208162-174208212	IMR90	lung:	fetal
48	chr1:174208162-174208212	SK-N-SH_RA	brain:	n/a
49	chr1:174208162-174208212	HRCEpiC	kidney:	n/a
50	chr1:174319673-174319723	NH-A	brain:	n/a

(count:87 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr1:174186060..174188372-chr1:174193893..174195942,2	K562	blood:
2	chr1:174156183..174157757-chr1:174183127..174185978,2	K562	blood:
3	chr1:174287001..174289924-chr1:174290747..174293393,2	K562	blood:
4	chr1:174231956..174232498-chr1:174695300..174696266,2	MCF-7	breast:
5	chr1:174302180..174304421-chr1:174305573..174307627,2	K562	blood:
6	chr1:174190274..174193024-chr1:174230012..174232463,2	K562	blood:
7	chr1:174215485..174217028-chr1:174218870..174220698,2	MCF-7	breast:
8	chr1:174148713..174151052-chr1:174207157..174208937,2	MCF-7	breast:
9	chr1:173923747..173925915-chr1:174209553..174212014,2	MCF-7	breast:
10	chr1:174223640..174225967-chr1:174230477..174232706,2	K562	blood:
11	chr1:174294663..174296200-chr1:174300746..174303006,2	MCF-7	breast:
12	chr1:174294663..174296200-chr1:174300746..174303006,2	MCF-7	breast:
13	chr1:174214049..174216342-chr7:121419636..121421271,2	MCF-7	breast:
14	chr1:174128625..174130655-chr1:174185944..174188643,2	K562	blood:
15	chr1:174238690..174241615-chr1:174967478..174969557,2	MCF-7	breast:
16	chr1:174189286..174192266-chr1:174192457..174196292,4	K562	blood:
17	chr1:173990518..173992302-chr1:174184021..174186918,2	MCF-7	breast:
18	chr1:174208598..174210493-chr1:174218021..174220094,2	MCF-7	breast:
19	chr1:174293187..174295185-chr1:174300416..174302383,2	K562	blood:
20	chr1:173836339..173838604-chr1:174183975..174185600,2	MCF-7	breast:
21	chr1:173389064..173389771-chr1:174186582..174187512,2	MCF-7	breast:
22	chr1:174207103..174211366-chr1:174211395..174216784,8	MCF-7	breast:
23	chr1:174215485..174217028-chr1:174218870..174220698,2	MCF-7	breast:
24	chr1:174062359..174063357-chr1:174186847..174187513,2	MCF-7	breast:
25	chr1:174226894..174227818-chr1:174695415..174695933,2	MCF-7	breast:
26	chr1:174182240..174184495-chr1:174184755..174187025,3	K562	blood:
27	chr1:174207103..174211366-chr1:174211395..174216784,8	MCF-7	breast:
28	chr1:174236001..174238178-chr1:174240503..174243812,3	K562	blood:
29	chr1:174178345..174180252-chr1:174182223..174184373,2	K562	blood:
30	chr1:174062652..174063623-chr1:174227311..174228008,2	MCF-7	breast:
31	chr1:174269404..174272933-chr1:174275940..174280582,4	MCF-7	breast:
32	chr1:174293187..174295185-chr1:174300416..174302383,2	K562	blood:
33	chr1:173398302..173399200-chr1:174186558..174187278,3	MCF-7	breast:
34	chr1:174236338..174237956-chr1:174241519..174243229,2	K562	blood:
35	chr1:174181164..174182677-chr1:174184140..174185798,2	K562	blood:
36	chr1:174292133..174293963-chr1:174301470..174303626,2	MCF-7	breast:
37	chr1:174178623..174180294-chr1:174184610..174187215,2	K562	blood:
38	chr1:174181164..174182677-chr1:174184140..174185798,2	K562	blood:
39	chr1:173835190..173837812-chr1:174184090..174186438,2	MCF-7	breast:
40	chr1:174236338..174237956-chr1:174241519..174243229,2	K562	blood:
41	chr1:174231547..174232813-chr1:174695220..174696649,6	MCF-7	breast:
42	chr1:174209547..174211969-chr1:174214945..174217167,2	MCF-7	breast:
43	chr1:174320271..174322217-chr1:174328823..174331200,2	MCF-7	breast:
44	chr1:174186060..174188372-chr1:174193893..174195942,2	K562	blood:
45	chr1:174193716..174196579-chr1:174196717..174200011,3	MCF-7	breast:
46	chr1:174225306..174226872-chr1:174233081..174234854,2	K562	blood:
47	chr1:174269404..174272933-chr1:174275940..174280582,4	MCF-7	breast:
48	chr1:174188949..174191911-chr1:174193700..174196292,5	K562	blood:
49	chr1:174236001..174238178-chr1:174240503..174243812,3	K562	blood:
50	chr1:174209547..174211969-chr1:174214945..174217167,2	MCF-7	breast:

No data

Variant related genes	Relation type
RABGAP1L	TF binding region
ENSG00000266125	TF binding region
RABGAP1L	CpG island
ENSG00000266125	CpG island
ENSG00000227373	chromatin interactions
ENSG00000224977	chromatin interactions
ENSG00000135870	chromatin interactions
ENSG00000208317	chromatin interactions
ENSG00000185278	chromatin interactions
ENSG00000116161	chromatin interactions
ENSG00000152061	chromatin interactions
ENSG00000234741	chromatin interactions

Extended variants
information (count: 5123 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:5123 , 50 per page) page: 1 2 3 4 5 6 7 ... 103

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116568809	chr1:174180019-174180020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs189597059	chr1:174180027-174180028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182213586	chr1:174180041-174180042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs542715256	chr1:174180052-174180053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556197283	chr1:174180167-174180168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs369223436	chr1:174180211-174180212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34148431	chr1:174180280-174180281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576470978	chr1:174180303-174180304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs61828580	chr1:174180331-174180332	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs186784529	chr1:174180352-174180353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs191619185	chr1:174180360-174180361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558468608	chr1:174180487-174180488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs541708980	chr1:174180536-174180537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560195153	chr1:174180548-174180549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs530869416	chr1:174180588-174180589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs181289496	chr1:174180603-174180604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs571760666	chr1:174180699-174180700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs548992632	chr1:174180702-174180703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138429434	chr1:174180707-174180708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569022466	chr1:174180757-174180758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs531415313	chr1:174180770-174180771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs551322848	chr1:174180775-174180776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs571386694	chr1:174180814-174180815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12059636	chr1:174180815-174180816	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs185667141	chr1:174180887-174180888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75368283	chr1:174180909-174180910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs74999180	chr1:174180911-174180912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs78177248	chr1:174180924-174180925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs77497674	chr1:174180927-174180928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77584102	chr1:174180932-174180933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs567331181	chr1:174180976-174180977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs12059680	chr1:174180983-174180984	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs556134198	chr1:174180985-174180986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs73034945	chr1:174181008-174181009	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs571546430	chr1:174181043-174181044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs539105891	chr1:174181057-174181058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs570490182	chr1:174181069-174181070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs558898875	chr1:174181074-174181075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572555738	chr1:174181100-174181101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs552561197	chr1:174181158-174181159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs189641881	chr1:174181164-174181165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532936204	chr1:174181186-174181187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs182318434	chr1:174181198-174181199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542673795	chr1:174181252-174181253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs562491173	chr1:174181277-174181278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs531323724	chr1:174181282-174181283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs551429698	chr1:174181298-174181299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs149249917	chr1:174181313-174181314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4607949	chr1:174181356-174181357	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs547179564	chr1:174181390-174181391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	16750200	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Retinoblastoma	19183342	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21509527	CNVD
Glioblastoma multiforme	17369134	CNVD
Cancer	17440070	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21611746	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Schizophrenia	20838587	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD

Chromatin state (count:1926 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174160800-174186600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:174162000-174189600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:174172800-174190600	Weak transcription	Fetal Intestine Large	intestine
4	chr1:174172800-174191000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:174173200-174191400	Weak transcription	Brain Anterior Caudate	brain
6	chr1:174174000-174186200	Weak transcription	Ovary	ovary
7	chr1:174174200-174180200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:174174200-174200200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:174175400-174200200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:174176000-174190800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:174176000-174222400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:174176200-174188800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:174176200-174191200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:174176800-174189400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:174176800-174222400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr1:174177000-174191200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:174177200-174212000	Weak transcription	Lung	lung
18	chr1:174178600-174212200	Weak transcription	Psoas Muscle	Psoas
19	chr1:174178800-174190800	Weak transcription	Thymus	Thymus
20	chr1:174179000-174186600	Weak transcription	Left Ventricle	heart
21	chr1:174179200-174190800	Weak transcription	Dnd41	blood
22	chr1:174179400-174180200	Weak transcription	Aorta	Aorta
23	chr1:174179400-174190200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr1:174179400-174191000	Weak transcription	Fetal Intestine Small	intestine
25	chr1:174184800-174186600	Weak transcription	Aorta	Aorta
26	chr1:174185400-174186400	Enhancers	GM12878-XiMat	blood
27	chr1:174186200-174186600	Enhancers	Fetal Kidney	kidney
28	chr1:174186200-174186800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr1:174186200-174186800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr1:174186200-174186800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr1:174186200-174186800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr1:174186200-174186800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:174186200-174186800	Enhancers	Fetal Heart	heart
34	chr1:174186200-174186800	Enhancers	Ovary	ovary
35	chr1:174186200-174187000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:174186200-174187200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr1:174186200-174187400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr1:174186200-174187600	Enhancers	Liver	Liver
39	chr1:174186200-174187600	Enhancers	HepG2	liver
40	chr1:174186200-174187600	Enhancers	K562	blood
41	chr1:174186200-174188200	Enhancers	Hela-S3	cervix
42	chr1:174186200-174188600	Enhancers	Primary B cells from peripheral blood	blood
43	chr1:174186200-174191200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr1:174186400-174186600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:174186400-174186600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:174186400-174186600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr1:174186400-174186800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr1:174186400-174186800	Enhancers	Fetal Stomach	stomach
49	chr1:174186400-174186800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr1:174186400-174187200	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links