Variant report

Variant	nsv1012862
Chromosome Location	chr1:73806210-73898030
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FPGT-3	chr1:73813817-73813975	XLOC_000256
2	lnc-FPGT-3	chr1:73820755-73820934	NONHSAT003934
3	lnc-FPGT-3	chr1:73820756-73820934	XLOC_000256
4	lnc-FPGT-3	chr1:73813817-73813934	XLOC_000256
5	lnc-FPGT-8	chr1:73873487-73873512	NONHSAT003947
6	lnc-FPGT-3	chr1:73813817-73813995	XLOC_000256
7	lnc-FPGT-3	chr1:73820756-73820918	XLOC_000256
8	lnc-FPGT-3	chr1:73813816-73813995	NONHSAT003934

No data

Extended variants
information (count: 291 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:291 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569539407	chr1:73809818-73809819	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs182652210	chr1:73809824-73809825	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs35003812	chr1:73809833-73809834	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs548955101	chr1:73809835-73809836	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs540808712	chr1:73809859-73809860	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs547878224	chr1:73809895-73809896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs555609472	chr1:73809902-73809903	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs186630754	chr1:73809938-73809939	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs114597665	chr1:73809970-73809971	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs115255187	chr1:73809999-73810000	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs556927310	chr1:73810000-73810001	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs575490603	chr1:73810079-73810080	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs542593690	chr1:73810082-73810083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs143900706	chr1:73810117-73810118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs573299984	chr1:73810124-73810125	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs574180489	chr1:73810129-73810130	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs150645200	chr1:73810199-73810200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs377362440	chr1:73813868-73813869	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs190880753	chr1:73813902-73813903	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs182648795	chr1:73813936-73813937	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs186340882	chr1:73820866-73820867	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs576862731	chr1:73820900-73820901	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs544224723	chr1:73820903-73820904	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs138788530	chr1:73820920-73820921	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs550405737	chr1:73820925-73820926	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs532770557	chr1:73823826-73823827	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs371980909	chr1:73823881-73823882	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs369784343	chr1:73823883-73823884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs184609894	chr1:73823887-73823888	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs536786398	chr1:73823937-73823938	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs555120913	chr1:73823948-73823949	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs567372349	chr1:73823969-73823970	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs534887080	chr1:73823990-73823991	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs141349129	chr1:73823992-73823993	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs199817905	chr1:73823993-73823994	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs182935968	chr1:73831801-73831802	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs536133104	chr1:73831819-73831820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs146846629	chr1:73831847-73831848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs137988802	chr1:73831967-73831968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs571553194	chr1:73831969-73831970	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs553366091	chr1:73832041-73832042	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs574787114	chr1:73832063-73832064	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs566185518	chr1:73832076-73832077	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs67157019	chr1:73832080-73832081	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs186060562	chr1:73832084-73832085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs550676156	chr1:73832100-73832101	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs371163619	chr1:73832125-73832126	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs192217578	chr1:73832150-73832151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs183543511	chr1:73832197-73832198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs566905247	chr1:73832201-73832202	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17133270	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
abnormal development	18461090	CNVD
Ewing''s sarcoma	17952124	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Poland''s syndrome	22110015	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21922591	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Effusion lymphoma	18079361	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73809800-73810200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:73823800-73824000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr1:73831800-73833000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:73847400-73849400	Enhancers	Fetal Intestine Small	intestine
5	chr1:73848000-73848800	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:73848800-73849400	Active TSS	Duodenum Mucosa	Duodenum
7	chr1:73860600-73861000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:73871800-73872200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:73871800-73872200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:73876600-73876800	Enhancers	Fetal Heart	heart
11	chr1:73876800-73877200	Flanking Active TSS	Fetal Heart	heart
12	chr1:73877200-73878400	Enhancers	Fetal Heart	heart
13	chr1:73885200-73886200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:73885200-73886400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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