Variant report
Variant | nsv1012865 |
---|---|
Chromosome Location | chr4:9429299-9794181 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2897)
- CpG islands (count:7084)
- Chromatin interactive region (count:40)
- LncRNA region (count:11)
- Mature miRNA region (count: 1)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr4:9454189-9454353 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr4:9705188-9705304 | HepG2 | liver: | n/a | n/a |
3 | ARID3A | chr4:9764889-9764976 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr4:9758253-9758343 | K562 | blood: | n/a | n/a |
5 | ATF1 | chr4:9693437-9693703 | K562 | blood: | n/a | n/a |
6 | ATF2 | chr4:9764713-9765001 | GM12878 | blood: | n/a | n/a |
7 | BACH1 | chr4:9605857-9606056 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | BACH1 | chr4:9533750-9534097 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr4:9689846-9689882 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | BACH1 | chr4:9784048-9784153 | H1-hESC | embryonic stem cell: | n/a | n/a |
11 | BATF | chr4:9606281-9606749 | GM12878 | blood: | n/a | n/a |
12 | BATF | chr4:9496997-9497347 | GM12878 | blood: | n/a | n/a |
13 | BATF | chr4:9606359-9606745 | GM12878 | blood: | n/a | n/a |
14 | BATF | chr4:9547853-9548038 | GM12878 | blood: | n/a | n/a |
15 | BATF | chr4:9560693-9560899 | GM12878 | blood: | n/a | n/a |
16 | BATF | chr4:9582796-9583040 | GM12878 | blood: | n/a | n/a |
17 | BATF | chr4:9582818-9583030 | GM12878 | blood: | n/a | n/a |
18 | BATF | chr4:9609959-9610276 | GM12878 | blood: | n/a | n/a |
19 | BATF | chr4:9609924-9610228 | GM12878 | blood: | n/a | n/a |
20 | BATF | chr4:9709608-9710002 | GM12878 | blood: | n/a | n/a |
21 | BATF | chr4:9560631-9560870 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr4:9511928-9512224 | GM12878 | blood: | n/a | n/a |
23 | BATF | chr4:9779146-9779367 | GM12878 | blood: | n/a | n/a |
24 | BATF | chr4:9661377-9661663 | GM12878 | blood: | n/a | n/a |
25 | BATF | chr4:9709684-9709950 | GM12878 | blood: | n/a | n/a |
26 | BATF | chr4:9637521-9637725 | GM12878 | blood: | n/a | n/a |
27 | BATF | chr4:9605704-9606128 | GM12878 | blood: | n/a | n/a |
28 | BATF | chr4:9431784-9432036 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr4:9481132-9481453 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr4:9697635-9697868 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr4:9481131-9481403 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr4:9715614-9715953 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr4:9456872-9457051 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr4:9661312-9661676 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr4:9511904-9512243 | GM12878 | blood: | n/a | n/a |
36 | BCL11A | chr4:9497025-9497432 | GM12878 | blood: | n/a | chr4:9497121-9497129 |
37 | BCL11A | chr4:9693955-9694191 | GM12878 | blood: | n/a | n/a |
38 | BCL11A | chr4:9709736-9710003 | GM12878 | blood: | n/a | n/a |
39 | BCL11A | chr4:9609991-9610319 | GM12878 | blood: | n/a | n/a |
40 | BCL11A | chr4:9547498-9547747 | GM12878 | blood: | n/a | n/a |
41 | BCL11A | chr4:9609970-9610277 | GM12878 | blood: | n/a | n/a |
42 | BCL11A | chr4:9637557-9637806 | GM12878 | blood: | n/a | n/a |
43 | BCL11A | chr4:9661303-9661712 | GM12878 | blood: | n/a | n/a |
44 | BCL11A | chr4:9709714-9709970 | GM12878 | blood: | n/a | n/a |
45 | BCL11A | chr4:9779122-9779297 | GM12878 | blood: | n/a | n/a |
46 | BCL11A | chr4:9606478-9606683 | GM12878 | blood: | n/a | n/a |
47 | BCL11A | chr4:9605779-9606088 | GM12878 | blood: | n/a | n/a |
48 | BCL11A | chr4:9605814-9606174 | GM12878 | blood: | n/a | n/a |
49 | BCL11A | chr4:9606348-9606693 | GM12878 | blood: | n/a | n/a |
50 | BCL3 | chr4:9747374-9747670 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:9509896-9509946 | NB4 | blood: | n/a |
2 | chr4:9602138-9602188 | PFSK-1 | brain: | n/a |
3 | chr4:9653008-9653058 | HEK293 | kidney: | embryo |
4 | chr4:9707741-9707791 | ovcar-3 | ovarian: | n/a |
5 | chr4:9508976-9509026 | GM19239 | blood: | n/a |
6 | chr4:9484955-9485005 | NH-A | brain: | n/a |
7 | chr4:9485487-9485537 | Jurkat | blood: | n/a |
8 | chr4:9495205-9495255 | SK-N-MC | brain: | n/a |
9 | chr4:9509896-9509946 | NB4 | blood: | n/a |
10 | chr4:9602138-9602188 | PFSK-1 | brain: | n/a |
11 | chr4:9653008-9653058 | HEK293 | kidney: | embryo |
12 | chr4:9707741-9707791 | ovcar-3 | ovarian: | n/a |
13 | chr4:9508976-9509026 | GM19239 | blood: | n/a |
14 | chr4:9484955-9485005 | NH-A | brain: | n/a |
15 | chr4:9485487-9485537 | Jurkat | blood: | n/a |
16 | chr4:9495205-9495255 | SK-N-MC | brain: | n/a |
17 | chr4:9510844-9510894 | HPAEpiC | pulmonary alveolar: | n/a |
18 | chr4:9787734-9787784 | HMEC | breast: | n/a |
19 | chr4:9510286-9510336 | SKMC | muscle: | n/a |
20 | chr4:9602138-9602188 | SK-N-SH | brain: | n/a |
21 | chr4:9494211-9494261 | GM19239 | blood: | n/a |
22 | chr4:9787734-9787784 | HAEpiC | amniotic membrane: | n/a |
23 | chr4:9558893-9558943 | GM12892 | blood: | n/a |
24 | chr4:9481822-9481872 | CMK | blood: | n/a |
25 | chr4:9475346-9475396 | IMR90 | lung: | fetal |
26 | chr4:9508240-9508290 | HUVEC | blood vessel: | n/a |
27 | chr4:9499194-9499244 | AG04450 | lung: | fetal |
28 | chr4:9497357-9497407 | SK-N-MC | brain: | n/a |
29 | chr4:9485487-9485537 | NB4 | blood: | n/a |
30 | chr4:9510572-9510622 | HCF | heart: | n/a |
31 | chr4:9760019-9760069 | Hela-S3 | cervix: | n/a |
32 | chr4:9457681-9457731 | RPTEC | kidney: | n/a |
33 | chr4:9557805-9557855 | NH-A | brain: | n/a |
34 | chr4:9509787-9509837 | HAEpiC | amniotic membrane: | n/a |
35 | chr4:9479622-9479672 | AG10803 | skin: | n/a |
36 | chr4:9653008-9653058 | HIPEpiC | eye: | n/a |
37 | chr4:9534313-9534363 | SK-N-SH | brain: | n/a |
38 | chr4:9783363-9783413 | HepG2 | liver: | n/a |
39 | chr4:9787734-9787784 | T-47D | breast: | n/a |
40 | chr4:9604432-9604482 | RPTEC | kidney: | n/a |
41 | chr4:9693516-9693566 | SK-N-MC | brain: | n/a |
42 | chr4:9509830-9509880 | HNPCEpiC | eye: | n/a |
43 | chr4:9508240-9508290 | MCF-7 | breast: | n/a |
44 | chr4:9534651-9534701 | MCF-7 | breast: | n/a |
45 | chr4:9453084-9453134 | HepG2 | liver: | n/a |
46 | chr4:9534388-9534438 | LNCaP | prostate: | n/a |
47 | chr4:9508177-9508227 | HEEpiC | esophagus: | n/a |
48 | chr4:9782891-9782941 | AG04450 | lung: | fetal |
49 | chr4:9534062-9534112 | NB4 | blood: | n/a |
50 | chr4:9500465-9500515 | ovcar-3 | ovarian: | n/a |
(count:40 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:91817635..91819182-chr4:9766044..9767255,9 | MCF-7 | breast: | |
2 | chr4:9765483..9767943-chr4:10007316..10009788,2 | MCF-7 | breast: | |
3 | chr2:91815622..91818416-chr4:9765055..9766802,2 | K562 | blood: | |
4 | chr4:9705037..9705657-chr4:9778184..9778690,2 | K562 | blood: | |
5 | chr4:9763456..9766236-chr4:10014004..10016919,3 | K562 | blood: | |
6 | chr2:91816443..91817305-chr4:9764390..9765414,6 | MCF-7 | breast: | |
7 | chr4:9764793..9765717-chr4:10015113..10016017,3 | MCF-7 | breast: | |
8 | chr4:9699934..9701585-chr4:10019007..10021805,2 | K562 | blood: | |
9 | chr4:9704779..9705714-chr4:10015117..10016069,5 | MCF-7 | breast: | |
10 | chr4:9764417..9765133-chr4:10016121..10017439,5 | MCF-7 | breast: | |
11 | chr2:91816088..91820118-chr4:9765029..9767622,10 | MCF-7 | breast: | |
12 | chr4:4147498..4148004-chr4:9497288..9497793,2 | MCF-7 | breast: | |
13 | chr4:9770192..9773137-chr4:10024212..10026749,2 | K562 | blood: | |
14 | chr4:9766485..9767197-chr4:10016698..10017481,2 | MCF-7 | breast: | |
15 | chr4:9764445..9765327-chr4:10020033..10020988,3 | K562 | blood: | |
16 | chr4:4147469..4148009-chr4:9497278..9497791,2 | MCF-7 | breast: | |
17 | chr4:9764437..9765430-chr4:10020023..10020916,6 | MCF-7 | breast: | |
18 | chr2:91818363..91818948-chr4:9766445..9767270,6 | MCF-7 | breast: | |
19 | chr2:91818675..91820415-chr4:9765033..9768552,3 | K562 | blood: | |
20 | chr2:91815162..91820044-chr4:9763391..9768700,25 | MCF-7 | breast: | |
21 | chr4:9766486..9767204-chr4:10064960..10065893,2 | MCF-7 | breast: | |
22 | chr4:9766550..9767471-chr4:10020110..10020837,2 | MCF-7 | breast: | |
23 | chr1:149221736..149225365-chr4:9763717..9766826,4 | MCF-7 | breast: | |
24 | chr4:9705013..9706114-chr4:10020117..10020881,3 | MCF-7 | breast: | |
25 | chr4:9766848..9767385-chr4:9900038..9900893,4 | MCF-7 | breast: | |
26 | chr1:149220703..149225113-chr4:9764948..9767069,4 | MCF-7 | breast: | |
27 | chr4:9766226..9767390-chr4:9899951..9901032,8 | MCF-7 | breast: | |
28 | chr4:9764866..9765415-chr4:9928949..9929492,2 | MCF-7 | breast: | |
29 | chr2:91815178..91817122-chr4:9765055..9766792,2 | K562 | blood: | |
30 | chr2:91816303..91817383-chr4:9764391..9765414,6 | MCF-7 | breast: | |
31 | chr4:9704873..9705750-chr4:10016280..10017221,3 | K562 | blood: | |
32 | chr2:91816400..91817015-chr4:9766701..9767270,2 | MCF-7 | breast: | |
33 | chr2:91818108..91819097-chr4:9766527..9767180,2 | K562 | blood: | |
34 | chr4:9705037..9705657-chr4:9778184..9778690,2 | K562 | blood: | |
35 | chr4:9764428..9765300-chr4:10016550..10017565,3 | K562 | blood: | |
36 | chr4:9533415..9534346-chr4:9660887..9661684,2 | MCF-7 | breast: | |
37 | chr4:9761130..9763005-chr4:9988480..9990175,2 | K562 | blood: | |
38 | chr4:9764792..9765537-chr4:9899989..9900954,5 | MCF-7 | breast: | |
39 | chr4:9533415..9534346-chr4:9660887..9661684,2 | MCF-7 | breast: | |
40 | chr4:9764370..9765339-chr4:10015197..10016013,4 | MCF-7 | breast: |
(count:11 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-DEFB131-1 | chr4:9470746-9471694 | NONHSAT095133 |
2 | lnc-DRD5-16 | chr4:9678932-9679558 | NONHSAT095141 |
3 | lnc-SLC2A9-1 | chr4:9686325-9686330 | XLOC_003881 |
4 | lnc-SLC2A9-6 | chr4:9680180-9680546 | l_2603_chr4:9680179-9682164_kidney |
5 | lnc-DRD5-15 | chr4:9680112-9680551 | l_2602_chr4:9680111-9682135_thyroid |
6 | lnc-RP11-1396O13.13.1-3 | chr4:9555234-9555605 | NONHSAT095137 |
7 | lnc-SLC2A9-1 | chr4:9691882-9692319 | XLOC_003881 |
8 | lnc-SLC2A9-6 | chr4:9681968-9682164 | l_2603_chr4:9680179-9682164_kidney |
9 | lnc-SLC2A9-2 | chr4:9693361-9693365 | XLOC_003880 |
10 | lnc-DRD5-15 | chr4:9681973-9682135 | l_2602_chr4:9680111-9682135_thyroid |
11 | lnc-SLC2A9-2 | chr4:9682416-9682671 | XLOC_003880 |
miRNA name | Chromosome Location | mirBase accession |
---|---|---|
hsa-miR-548i | chr4:9557878-9557899 | MIMAT0005935_1 |
No data |
Variant related genes | Relation type |
---|---|
OR7E85P | TF binding region |
ENSG00000266246 | TF binding region |
ENSG00000249799 | TF binding region |
DRD5 | TF binding region |
ENPP7P11 | TF binding region |
OR7E84P | TF binding region |
OR7E86P | TF binding region |
MIR548I2 | TF binding region |
FAM86MP | TF binding region |
DEFB131 | TF binding region |
ENSG00000249443 | TF binding region |
UNC93B7 | TF binding region |
ENSG00000249563 | TF binding region |
OR7E83P | TF binding region |
ALG1L3P | TF binding region |
ENSG00000265901 | TF binding region |
ENSG00000242034 | TF binding region |
OR7E35P | TF binding region |
ENSG00000244004 | TF binding region |
OR7E85P | CpG island |
ENSG00000266246 | CpG island |
ENSG00000249799 | CpG island |
DRD5 | CpG island |
ENPP7P11 | CpG island |
OR7E84P | CpG island |
OR7E86P | CpG island |
MIR548I2 | CpG island |
FAM86MP | CpG island |
DEFB131 | CpG island |
ENSG00000249443 | CpG island |
UNC93B7 | CpG island |
ENSG00000249563 | CpG island |
OR7E83P | CpG island |
ALG1L3P | CpG island |
ENSG00000265901 | CpG island |
ENSG00000242034 | CpG island |
OR7E35P | CpG island |
ENSG00000244004 | CpG island |
ENSG00000109667 | chromatin interactions |
ENSG00000206737 | chromatin interactions |
ENSG00000250413 | chromatin interactions |
FBXW7 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs568980779 | chr4:9429315-9429316 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs28595731 | chr4:9429332-9429333 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
3 | rs28665395 | chr4:9429335-9429336 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
4 | rs572769345 | chr4:9429343-9429344 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs540160416 | chr4:9429379-9429380 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs28633849 | chr4:9429395-9429396 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs574478444 | chr4:9429400-9429401 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs377395883 | chr4:9429413-9429414 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs542247128 | chr4:9429417-9429418 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs563624890 | chr4:9429436-9429437 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs531035552 | chr4:9429438-9429439 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs369387108 | chr4:9429440-9429441 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs546037639 | chr4:9429461-9429462 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs138054196 | chr4:9429472-9429473 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs6414722 | chr4:9429499-9429500 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
16 | rs185042569 | chr4:9429539-9429540 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs547291677 | chr4:9429544-9429545 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs28539709 | chr4:9429545-9429546 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
19 | rs528880702 | chr4:9429552-9429553 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs550554503 | chr4:9429554-9429555 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs568818768 | chr4:9429564-9429565 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs28412316 | chr4:9429598-9429599 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
23 | rs551135655 | chr4:9429601-9429602 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs566311230 | chr4:9429603-9429604 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs142518443 | chr4:9429619-9429620 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs371274201 | chr4:9429624-9429625 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs188764843 | chr4:9429657-9429658 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs573923335 | chr4:9429676-9429677 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs535433067 | chr4:9429682-9429683 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs28458944 | chr4:9429687-9429688 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
31 | rs376456338 | chr4:9429689-9429690 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs546299968 | chr4:9429698-9429699 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs28715537 | chr4:9429710-9429711 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs573458546 | chr4:9429712-9429713 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs540877491 | chr4:9429734-9429735 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs562323354 | chr4:9429761-9429762 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs529600805 | chr4:9429784-9429785 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs543131191 | chr4:9429785-9429786 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs147460069 | chr4:9438200-9438201 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs186885167 | chr4:9438236-9438237 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs572830825 | chr4:9438270-9438271 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs7376091 | chr4:9438283-9438284 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
43 | rs114907046 | chr4:9438284-9438285 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs139250000 | chr4:9438302-9438303 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs191782785 | chr4:9438322-9438323 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs80309866 | chr4:9438323-9438324 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs149652757 | chr4:9438338-9438339 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs74341411 | chr4:9438348-9438349 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs537845190 | chr4:9438349-9438350 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs181998881 | chr4:9438354-9438355 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Melanoma | 20688739 | CNVD |
Wilms tumour | 21544195 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17603634 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 17533364 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Cancer | 21637783 | CNVD |
Melanoma | 21693616 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Cervical cancer | 21062161 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Neuroblastoma | 18923191 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Prostate cancer | 18632612 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Breast cancer | 21509527 | CNVD |
Lung cancer | 18438408 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autosomal-dominant microtia | 18179897 | CNVD |
Glioma | 17123091 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Breast cancer | 17133270 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Schizophrenia | 23813976 | CNVD |
Breast cancer | 21858162 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Sinonasal adenocarcinoma | 21360264 | CNVD |
Ependymoma | 20639864 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:9429000-9429400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
2 | chr4:9429400-9429800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
3 | chr4:9438200-9438600 | Enhancers | Primary B cells from cord blood | blood |
4 | chr4:9438200-9438600 | Enhancers | Primary hematopoietic stem cells | blood |
5 | chr4:9452600-9453800 | Enhancers | Small Intestine | intestine |
6 | chr4:9453000-9453800 | Enhancers | Duodenum Mucosa | Duodenum |
7 | chr4:9453600-9454800 | Enhancers | Rectal Mucosa Donor 31 | rectum |
8 | chr4:9453600-9456200 | Enhancers | Fetal Intestine Large | intestine |
9 | chr4:9453600-9456800 | Enhancers | Fetal Intestine Small | intestine |
10 | chr4:9453600-9457200 | Enhancers | Stomach Mucosa | stomach |
11 | chr4:9453800-9454600 | Weak transcription | Duodenum Mucosa | Duodenum |
12 | chr4:9454600-9454800 | Enhancers | Duodenum Mucosa | Duodenum |
13 | chr4:9454800-9455200 | Weak transcription | Duodenum Mucosa | Duodenum |
14 | chr4:9454800-9455800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
15 | chr4:9455200-9457200 | Enhancers | Duodenum Mucosa | Duodenum |
16 | chr4:9455800-9456800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
17 | chr4:9455800-9457200 | Enhancers | Rectal Mucosa Donor 31 | rectum |
18 | chr4:9456400-9456800 | Enhancers | HUES6 Cell Line | embryonic stem cell |
19 | chr4:9456400-9457200 | Enhancers | Gastric | stomach |
20 | chr4:9476200-9477000 | Bivalent Enhancer | Fetal Brain Male | brain |
21 | chr4:9476600-9477000 | Bivalent/Poised TSS | HUES6 Cell Line | embryonic stem cell |
22 | chr4:9476600-9477000 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
23 | chr4:9476600-9477000 | Bivalent Enhancer | Fetal Muscle Leg | muscle |
24 | chr4:9477000-9477400 | Enhancers | Brain Inferior Temporal Lobe | brain |
25 | chr4:9481600-9482000 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
26 | chr4:9481600-9482000 | Enhancers | Rectal Mucosa Donor 31 | rectum |
27 | chr4:9481800-9482000 | Enhancers | Duodenum Mucosa | Duodenum |
28 | chr4:9484800-9503800 | Weak transcription | Right Atrium | heart |
29 | chr4:9495800-9496800 | Enhancers | Fetal Thymus | thymus |
30 | chr4:9496200-9496800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
31 | chr4:9496200-9496800 | Enhancers | Thymus | Thymus |
32 | chr4:9496200-9497000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
33 | chr4:9496400-9496600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
34 | chr4:9496400-9496800 | Enhancers | Primary hematopoietic stem cells | blood |
35 | chr4:9496600-9499000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
36 | chr4:9496800-9499600 | Weak transcription | Primary hematopoietic stem cells | blood |
37 | chr4:9499000-9499200 | Bivalent Enhancer | ES-I3 Cell Line | embryonic stem cell |
38 | chr4:9499000-9499200 | Flanking Bivalent TSS/Enh | iPS-15b Cell Line | embryonic stem cell |
39 | chr4:9499000-9499600 | Enhancers | Liver | Liver |
40 | chr4:9499000-9500400 | Bivalent/Poised TSS | iPS-20b Cell Line | embryonic stem cell |
41 | chr4:9499000-9500600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
42 | chr4:9499200-9499400 | Bivalent Enhancer | Fetal Thymus | thymus |
43 | chr4:9499200-9499600 | Bivalent Enhancer | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
44 | chr4:9499200-9499800 | Bivalent Enhancer | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
45 | chr4:9499200-9499800 | Bivalent/Poised TSS | Brain Inferior Temporal Lobe | brain |
46 | chr4:9499200-9500200 | Bivalent Enhancer | Primary hematopoietic stem cells short term culture | blood |
47 | chr4:9499200-9500200 | Bivalent Enhancer | Adipose Nuclei | Adipose |
48 | chr4:9499200-9500400 | Bivalent/Poised TSS | HUES48 Cell Line | embryonic stem cell |
49 | chr4:9499200-9500400 | Active TSS | iPS DF 6.9 Cell Line | embryonic stem cell |
50 | chr4:9499200-9500600 | Active TSS | H9 Cell Line | embryonic stem cell |