Variant report

Variant	nsv1015041
Chromosome Location	chr3:400861-571198
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:418748-419094	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:534692-534822	HepG2	liver:	n/a	n/a
3	ARID3A	chr3:455772-456068	HepG2	liver:	n/a	chr3:455850-455866
4	BACH1	chr3:541423-541496	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr3:516562-516874	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr3:515030-515408	GM12878	blood:	n/a	chr3:515252-515263
7	BATF	chr3:462277-462661	GM12878	blood:	n/a	chr3:462485-462494
8	BATF	chr3:505464-505768	GM12878	blood:	n/a	n/a
9	BATF	chr3:515014-515376	GM12878	blood:	n/a	chr3:515252-515263
10	BATF	chr3:462357-462600	GM12878	blood:	n/a	chr3:462485-462494
11	BHLHE40	chr3:462348-462658	GM12878	blood:	n/a	n/a
12	BHLHE40	chr3:543200-543216	GM12878	blood:	n/a	n/a
13	BHLHE40	chr3:401416-401710	GM12878	blood:	n/a	n/a
14	BRCA1	chr3:463605-463647	Hela-S3	cervix:	n/a	n/a
15	BRCA1	chr3:467465-468300	Hela-S3	cervix:	n/a	n/a
16	CEBPB	chr3:494829-495089	A549	lung:	n/a	n/a
17	CEBPB	chr3:555007-555386	Hela-S3	cervix:	n/a	n/a
18	CEBPB	chr3:544942-545225	HepG2	liver:	n/a	chr3:545063-545076 chr3:545064-545075
19	CEBPB	chr3:438012-438371	IMR90	lung:	n/a	chr3:438182-438195 chr3:438184-438193
20	CEBPB	chr3:406067-406268	H1-hESC	embryonic stem cell:	n/a	chr3:406169-406180 chr3:406169-406182 chr3:406171-406182
21	CEBPB	chr3:560581-560882	A549	lung:	n/a	chr3:560731-560742
22	CEBPB	chr3:406009-406340	HepG2	liver:	n/a	chr3:406169-406180 chr3:406169-406182 chr3:406171-406182
23	CEBPB	chr3:450750-451019	A549	lung:	n/a	n/a
24	CEBPB	chr3:450741-451052	HepG2	liver:	n/a	n/a
25	CEBPB	chr3:452335-452549	HepG2	liver:	n/a	chr3:452447-452458
26	CEBPB	chr3:526427-526685	HepG2	liver:	n/a	n/a
27	CEBPB	chr3:560575-560880	HepG2	liver:	n/a	chr3:560731-560742
28	CEBPB	chr3:468815-469191	Hela-S3	cervix:	n/a	chr3:468996-469009 chr3:469100-469117 chr3:468998-469009
29	CEBPB	chr3:534600-534964	HepG2	liver:	n/a	chr3:534767-534778
30	CEBPB	chr3:452366-452605	IMR90	lung:	n/a	chr3:452447-452458
31	CEBPB	chr3:526407-526558	H1-hESC	embryonic stem cell:	n/a	n/a
32	CEBPB	chr3:459160-459210	K562	blood:	n/a	chr3:459185-459196
33	CEBPB	chr3:438085-438248	K562	blood:	n/a	chr3:438182-438195 chr3:438184-438193
34	CEBPB	chr3:544911-545212	IMR90	lung:	n/a	chr3:545063-545076 chr3:545064-545075
35	CEBPB	chr3:438022-438326	H1-hESC	embryonic stem cell:	n/a	chr3:438182-438195 chr3:438184-438193
36	CEBPB	chr3:473256-473490	A549	lung:	n/a	chr3:473347-473358
37	CEBPB	chr3:437995-438379	Hela-S3	cervix:	n/a	chr3:438182-438195 chr3:438184-438193
38	CEBPB	chr3:466898-468265	Hela-S3	cervix:	n/a	n/a
39	CEBPB	chr3:473205-473536	HepG2	liver:	n/a	chr3:473347-473358
40	CEBPB	chr3:438003-438367	A549	lung:	n/a	chr3:438182-438195 chr3:438184-438193
41	CEBPB	chr3:426560-426615	A549	lung:	n/a	chr3:426568-426579 chr3:426568-426577
42	CEBPB	chr3:458278-458461	A549	lung:	n/a	chr3:458369-458380 chr3:458369-458380 chr3:458369-458382 chr3:458369-458382
43	CEBPB	chr3:545112-545116	K562	blood:	n/a	n/a
44	CEBPB	chr3:544910-545217	Hela-S3	cervix:	n/a	chr3:545063-545076 chr3:545064-545075
45	CEBPB	chr3:450708-451032	IMR90	lung:	n/a	n/a
46	CEBPB	chr3:534354-535027	Hela-S3	cervix:	n/a	chr3:534767-534778
47	CEBPB	chr3:544919-545200	A549	lung:	n/a	chr3:545063-545076 chr3:545064-545075
48	CEBPB	chr3:450769-450941	H1-hESC	embryonic stem cell:	n/a	n/a
49	CEBPB	chr3:438001-438370	HepG2	liver:	n/a	chr3:438182-438195 chr3:438184-438193
50	CEBPB	chr3:468928-469135	H1-hESC	embryonic stem cell:	n/a	chr3:468996-469009 chr3:469100-469117 chr3:468998-469009

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:427757-427807	LNCaP	prostate:	n/a
2	chr3:427757-427807	LNCaP	prostate:	n/a
3	chr3:523012-523062	HEK293	kidney:	embryo
4	chr3:523012-523062	GM12892	blood:	n/a
5	chr3:491979-492029	LNCaP	prostate:	n/a
6	chr3:491979-492029	GM12878	blood:	n/a
7	chr3:447414-447464	CMK	blood:	n/a
8	chr3:447414-447464	AG04449	skin:	fetal
9	chr3:523012-523062	HRCEpiC	kidney:	n/a
10	chr3:447414-447464	HCF	heart:	n/a
11	chr3:501673-501723	HPAEpiC	pulmonary alveolar:	n/a
12	chr3:491979-492029	HUVEC	blood vessel:	n/a
13	chr3:427558-427608	AG09309	skin:	n/a
14	chr3:501673-501723	AoSMC	blood vessel:	n/a
15	chr3:523375-523425	NT2-D1	testis:	n/a
16	chr3:447414-447464	Caco-2	colon:	n/a
17	chr3:501673-501723	HepG2	liver:	n/a
18	chr3:447414-447464	GM06990	blood:	n/a
19	chr3:491979-492029	HCF	heart:	n/a
20	chr3:447414-447464	SK-N-SH	brain:	n/a
21	chr3:523375-523425	H1-hESC	embryonic stem cell:	embryo
22	chr3:427757-427807	RPTEC	kidney:	n/a
23	chr3:427558-427608	HCF	heart:	n/a
24	chr3:427757-427807	Hepatocyte	liver:	n/a
25	chr3:501673-501723	MCF-7	breast:	n/a
26	chr3:427757-427807	A549	lung:	n/a
27	chr3:523375-523425	AG09319	gingival:	n/a
28	chr3:427558-427608	SK-N-SH	brain:	n/a
29	chr3:523012-523062	ovcar-3	ovarian:	n/a
30	chr3:523012-523062	ECC-1	luminal epithelium:	n/a
31	chr3:447414-447464	HepG2	liver:	n/a
32	chr3:427558-427608	T-47D	breast:	n/a
33	chr3:427558-427608	SKMC	muscle:	n/a
34	chr3:447414-447464	PFSK-1	brain:	n/a
35	chr3:491979-492029	NH-A	brain:	n/a
36	chr3:523375-523425	ProgFib	skin:	n/a
37	chr3:491979-492029	HCM	heart:	n/a
38	chr3:501673-501723	GM12892	blood:	n/a
39	chr3:523012-523062	NH-A	brain:	n/a
40	chr3:427757-427807	NHDF-neo	bronchial:	n/a
41	chr3:523375-523425	Hepatocyte	liver:	n/a
42	chr3:427558-427608	SK-N-MC	brain:	n/a
43	chr3:427558-427608	A549	lung:	n/a
44	chr3:447414-447464	MCF-7	breast:	n/a
45	chr3:501673-501723	HMEC	breast:	n/a
46	chr3:427757-427807	AG10803	skin:	n/a
47	chr3:501673-501723	IMR90	lung:	fetal
48	chr3:523375-523425	HPAEpiC	pulmonary alveolar:	n/a
49	chr3:523375-523425	SKMC	muscle:	n/a
50	chr3:523375-523425	NHDF-neo	bronchial:	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:565796..568589-chr3:571178..572728,2	K562	blood:
2	chr3:556350..557928-chr3:558208..559835,2	MCF-7	breast:
3	chr3:565796..568589-chr3:571178..572728,2	K562	blood:
4	chr3:457571..459756-chr3:462210..465015,2	K562	blood:
5	chr3:323232..326179-chr3:404720..407065,2	K562	blood:
6	chr3:426526..428688-chr3:432686..435480,2	K562	blood:
7	chr3:423895..425881-chr3:427804..430449,2	K562	blood:
8	chr3:556350..557928-chr3:558208..559835,2	MCF-7	breast:
9	chr3:496434..499262-chr3:500586..502601,2	K562	blood:
10	chr3:522873..523625-chr3:674344..674995,2	MCF-7	breast:
11	chr3:554700..557337-chr3:557649..560284,2	K562	blood:
12	chr3:455533..456082-chr3:893341..894026,2	MCF-7	breast:
13	chr3:395767..396427-chr3:418920..419430,2	MCF-7	breast:
14	chr3:554700..557337-chr3:557649..560284,2	K562	blood:
15	chr3:512741..514299-chr3:528430..530623,2	K562	blood:
16	chr3:453296..456199-chr3:456966..458950,2	K562	blood:
17	chr3:496434..499262-chr3:500586..502601,2	K562	blood:
18	chr3:512741..514299-chr3:528430..530623,2	K562	blood:
19	chr3:453296..456199-chr3:456966..458950,2	K562	blood:
20	chr3:84682..85249-chr3:418773..419384,2	MCF-7	breast:
21	chr3:423895..425881-chr3:427804..430449,2	K562	blood:
22	chr3:457571..459756-chr3:462210..465015,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHL1-6	chr3:552914-553010	ucscGeneNc_uc003boy_1
2	lnc-IL5RA-5	chr3:427386-427478	ENSG00000234661.1
3	lnc-IL5RA-5	chr3:405053-405706	ENSG00000234661.1
4	lnc-IL5RA-5	chr3:424250-424415	ENSG00000234661.1
5	lnc-IL5RA-5	chr3:405518-405706	ENSG00000234661.2
6	lnc-IL5RA-5	chr3:415500-415735	ENSG00000234661.2

No.	miRNA target gene	miRNA name	Chromosome Location
1	CHL1	hsa-miR-181a-5p	chr3:448562-448584
2	CHL1	hsa-miR-10a-5p	chr3:450185-450191
3	CHL1	hsa-miR-10a-5p	chr3:450171-450192

Variant related genes	Relation type
CHL1-AS1	TF binding region
CHL1	TF binding region
CHL1-AS1	CpG island
CHL1	CpG island
ENSG00000234661	chromatin interactions
ENSG00000252017	chromatin interactions

Extended variants
information (count: 5847 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:5847 , 50 per page) page: 1 2 3 4 5 6 7 ... 117

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs79016614	chr3:400972-400973	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs531009656	chr3:401000-401001	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs552195368	chr3:401002-401003	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs2117043	chr3:401005-401006	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs191609102	chr3:401027-401028	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs184087446	chr3:401048-401049	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs546485115	chr3:401055-401056	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs201912513	chr3:401065-401066	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs200014834	chr3:401079-401080	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs568295507	chr3:401080-401081	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs529195518	chr3:401125-401126	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs11129587	chr3:401132-401133	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs568543028	chr3:401135-401136	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs138658441	chr3:401140-401141	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs557802867	chr3:401160-401161	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs543172867	chr3:401168-401169	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs2117044	chr3:401186-401187	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs146211997	chr3:401218-401219	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs553338410	chr3:401241-401242	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs575202422	chr3:401299-401300	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs542572656	chr3:401309-401310	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs557369628	chr3:401339-401340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs188635501	chr3:401348-401349	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs546235279	chr3:401367-401368	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs564560515	chr3:401397-401398	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs149486325	chr3:401403-401404	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs540418001	chr3:401405-401406	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs192978726	chr3:401461-401462	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs143852739	chr3:401480-401481	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs76878149	chr3:401502-401503	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs550434047	chr3:401521-401522	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs2060312	chr3:401533-401534	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs370232028	chr3:401558-401559	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs532728846	chr3:401601-401602	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs148616784	chr3:401617-401618	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs566560335	chr3:401639-401640	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs142444535	chr3:401645-401646	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs112048873	chr3:401659-401660	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs547158088	chr3:401673-401674	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs111522350	chr3:401684-401685	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs559282748	chr3:401708-401709	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs75490605	chr3:401719-401720	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs140081251	chr3:401732-401733	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs576017963	chr3:401742-401743	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs80060300	chr3:401747-401748	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs557911493	chr3:401759-401760	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs147722584	chr3:401769-401770	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs185512203	chr3:401785-401786	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs139741160	chr3:401787-401788	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs113386081	chr3:401811-401812	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Cancer	20164920	CNVD
Lung cancer	16618734	CNVD
Autism	18349135	CNVD
Breast cancer	20409316	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Intellectual disability	22045946	CNVD
Squamous cell cancer	19607727	CNVD
Gastric adenocarcinoma	19115996	CNVD
sporadic birth defects	19047251	CNVD
Mental retardation	17124404	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Sudden cardiac death	19188705	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ovarian cancer	21720365	CNVD
Neuroblastoma	18923191	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Breast cancer	17603634	CNVD
Neuroblastoma	17327916	CNVD
Glioblastoma multiforme	21080181	CNVD
Colorectal cancer	21297112	CNVD
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD
Autism	22543975	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Tetralogy of Fallot	22912587	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	20685689	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:439 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:366000-410400	Weak transcription	Brain Anterior Caudate	brain
2	chr3:385200-420200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:389200-404000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:392400-409000	Weak transcription	Fetal Brain Female	brain
5	chr3:392800-406400	Weak transcription	Brain Germinal Matrix	brain
6	chr3:393000-403000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:396600-401400	Weak transcription	Fetal Brain Male	brain
8	chr3:397200-415000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:397600-403400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:397600-453400	Weak transcription	Brain Angular Gyrus	brain
11	chr3:398400-415000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:398600-408800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:398600-411200	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:399000-406000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:399000-414800	Weak transcription	Ovary	ovary
16	chr3:400400-401400	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:400800-402200	Enhancers	Primary B cells from peripheral blood	blood
18	chr3:400800-413400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:401200-401400	Enhancers	Brain Substantia Nigra	brain
20	chr3:401400-401600	Enhancers	Colon Smooth Muscle	Colon
21	chr3:401400-401800	Enhancers	GM12878-XiMat	blood
22	chr3:401400-402200	Strong transcription	Fetal Brain Male	brain
23	chr3:401400-405200	Weak transcription	Brain Substantia Nigra	brain
24	chr3:402200-409400	Weak transcription	Fetal Brain Male	brain
25	chr3:403000-405000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:403400-405000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:404000-404200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr3:404200-404600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:404600-405000	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr3:405000-407600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:405000-409600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:407000-407600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:407000-407800	Enhancers	Fetal Lung	lung
34	chr3:407000-409200	Enhancers	Fetal Kidney	kidney
35	chr3:407600-409400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:408400-416200	Weak transcription	Brain Substantia Nigra	brain
37	chr3:408800-409200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:409000-409400	Strong transcription	Fetal Brain Female	brain
39	chr3:409400-410200	Weak transcription	Fetal Brain Female	brain
40	chr3:409400-419800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:409600-409800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr3:411600-414600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:412000-414800	Weak transcription	Brain Germinal Matrix	brain
44	chr3:412800-430400	Weak transcription	Fetal Brain Female	brain
45	chr3:414600-415600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:414600-416800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr3:414800-415200	Genic enhancers	Ovary	ovary
48	chr3:414800-415400	Strong transcription	Brain Germinal Matrix	brain
49	chr3:414800-416200	Enhancers	Spleen	Spleen
50	chr3:414800-416400	Enhancers	Fetal Muscle Leg	muscle

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