Variant report

Variant	nsv1015153
Chromosome Location	chr9:17596833-17632364
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNTLN-5	chr9:17630352-17630427	NONHSAT130304

Extended variants
information (count: 1823 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:1823 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2208506	chr9:17596833-17596834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs201211310	chr9:17596839-17596840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs370123714	chr9:17596845-17596846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572440933	chr9:17596852-17596853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs115203821	chr9:17596886-17596887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs560519573	chr9:17596898-17596899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs3808773	chr9:17596942-17596943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549809853	chr9:17596980-17596981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs564873473	chr9:17597012-17597013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs532331020	chr9:17597014-17597015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs145991723	chr9:17597039-17597040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs565962097	chr9:17597082-17597083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs529979874	chr9:17597104-17597105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs139928584	chr9:17597113-17597114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs567603472	chr9:17597125-17597126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs537861015	chr9:17597149-17597150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs547301238	chr9:17597154-17597155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs556609478	chr9:17597158-17597159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs191608706	chr9:17597161-17597162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs117164978	chr9:17597172-17597173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182652452	chr9:17597186-17597187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs572327709	chr9:17597194-17597195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs542870307	chr9:17597231-17597232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554854547	chr9:17597291-17597292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10963157	chr9:17597317-17597318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs575983147	chr9:17597324-17597325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs377005928	chr9:17597361-17597362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs546549914	chr9:17597395-17597396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187209546	chr9:17597401-17597402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192814086	chr9:17597415-17597416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs143229764	chr9:17597416-17597417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs144498782	chr9:17597419-17597420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs541141158	chr9:17597429-17597430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs78501703	chr9:17597487-17597488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs199852579	chr9:17597515-17597516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs78789823	chr9:17597516-17597517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35443283	chr9:17597528-17597529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs529918478	chr9:17597565-17597566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs142532371	chr9:17597660-17597661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs569890797	chr9:17597664-17597665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs531727116	chr9:17597688-17597689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs73418641	chr9:17597735-17597736	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs571632083	chr9:17597745-17597746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs538719311	chr9:17597755-17597756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs185380417	chr9:17597788-17597789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs370556619	chr9:17597795-17597796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs565897291	chr9:17597805-17597806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs114349458	chr9:17597806-17597807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554842002	chr9:17597818-17597819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs529386654	chr9:17597857-17597858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	21364760	CNVD
Cancer	22183965	CNVD
Lung adenocarcinoma	21935476	CNVD
Thoracic aortic aneurysm	21698135	CNVD
Pancreatic cancer	21811587	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:149 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17590600-17600400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:17598000-17598200	Enhancers	Psoas Muscle	Psoas
3	chr9:17599200-17599600	Enhancers	Fetal Brain Female	brain
4	chr9:17599400-17599600	Enhancers	Hela-S3	cervix
5	chr9:17599600-17600600	Weak transcription	Hela-S3	cervix
6	chr9:17599800-17600600	Weak transcription	Fetal Heart	heart
7	chr9:17600400-17601200	Enhancers	Fetal Brain Male	brain
8	chr9:17600400-17602200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr9:17600600-17600800	Enhancers	Fetal Heart	heart
10	chr9:17600600-17602000	Enhancers	Hela-S3	cervix
11	chr9:17600800-17601800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:17600800-17607400	Weak transcription	Fetal Heart	heart
13	chr9:17601000-17601600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:17601000-17601800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:17601000-17601800	Enhancers	NH-A	brain
16	chr9:17602000-17604000	Weak transcription	Hela-S3	cervix
17	chr9:17602200-17608600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:17604000-17605000	Enhancers	Hela-S3	cervix
19	chr9:17605000-17608600	Weak transcription	Hela-S3	cervix
20	chr9:17607400-17613000	Enhancers	Fetal Heart	heart
21	chr9:17608600-17608800	Enhancers	Hela-S3	cervix
22	chr9:17608600-17610800	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr9:17608800-17609200	Weak transcription	Hela-S3	cervix
24	chr9:17609000-17609400	Enhancers	Left Ventricle	heart
25	chr9:17609200-17610000	Enhancers	Hela-S3	cervix
26	chr9:17609800-17610000	Enhancers	Left Ventricle	heart
27	chr9:17609800-17612400	Weak transcription	Fetal Brain Male	brain
28	chr9:17610000-17611400	Weak transcription	Hela-S3	cervix
29	chr9:17610800-17611800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr9:17611400-17612000	Enhancers	Hela-S3	cervix
31	chr9:17611600-17612200	Enhancers	Left Ventricle	heart
32	chr9:17611800-17613600	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr9:17611800-17615200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:17612000-17612200	Enhancers	Brain Germinal Matrix	brain
35	chr9:17612000-17612400	Flanking Active TSS	Hela-S3	cervix
36	chr9:17612000-17615200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr9:17612200-17613600	Weak transcription	Brain Germinal Matrix	brain
38	chr9:17612400-17612600	Enhancers	Brain Anterior Caudate	brain
39	chr9:17612400-17613400	Enhancers	Hela-S3	cervix
40	chr9:17612400-17614400	Enhancers	Fetal Brain Male	brain
41	chr9:17612600-17613600	Weak transcription	Brain Anterior Caudate	brain
42	chr9:17612800-17614800	Enhancers	Fetal Brain Female	brain
43	chr9:17613000-17614000	Weak transcription	Fetal Heart	heart
44	chr9:17613400-17613800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr9:17613400-17613800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:17613400-17614200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr9:17613400-17614200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr9:17613400-17614200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr9:17613400-17614200	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr9:17613400-17615400	Flanking Active TSS	Hela-S3	cervix

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