Variant report

Variant	nsv1015529
Chromosome Location	chr6:162394804-162643509
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
2	chr3:66689243..66689865-chr6:162514238..162514739,2	MCF-7	breast:
3	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
4	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
5	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
6	chr6:162620407..162622935-chr6:162623040..162625617,2	K562	blood:
7	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
8	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:
9	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
10	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
11	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
12	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:
13	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
14	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
15	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
16	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:
17	chr6:162620407..162622935-chr6:162623040..162625617,2	K562	blood:
18	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
19	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
20	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
21	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:
22	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
23	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
24	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
25	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:

No data

Extended variants
information (count: 8483 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:8483 , 50 per page) page: 1 2 3 4 5 6 7 ... 170

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569924359	chr6:162394860-162394861	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs79525844	chr6:162394908-162394909	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112555387	chr6:162394976-162394977	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs111447237	chr6:162394991-162394992	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528260796	chr6:162395021-162395022	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs117235586	chr6:162395035-162395036	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs140901173	chr6:162395069-162395070	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs536957571	chr6:162395109-162395110	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs150157577	chr6:162395156-162395157	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1784586	chr6:162395163-162395164	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs535882570	chr6:162395191-162395192	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs575357696	chr6:162395196-162395197	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs555883852	chr6:162395213-162395214	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572615198	chr6:162395275-162395276	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs541611492	chr6:162395283-162395284	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs558075527	chr6:162395286-162395287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs78148447	chr6:162395321-162395322	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs193187975	chr6:162395336-162395337	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs75431673	chr6:162395369-162395370	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs116014831	chr6:162395370-162395371	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs185078718	chr6:162395382-162395383	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368313156	chr6:162395435-162395436	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs559019955	chr6:162395464-162395465	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs369484236	chr6:162395502-162395503	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs528176093	chr6:162395538-162395539	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs551515389	chr6:162395548-162395549	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs141072146	chr6:162395609-162395610	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs530805914	chr6:162395614-162395615	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs547169754	chr6:162395615-162395616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs146959171	chr6:162395657-162395658	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs567603827	chr6:162395723-162395724	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs535842394	chr6:162395737-162395738	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs77036739	chr6:162395778-162395779	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs566134258	chr6:162395779-162395780	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs190111144	chr6:162395802-162395803	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs76915045	chr6:162395826-162395827	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs578091672	chr6:162395828-162395829	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs537685851	chr6:162395833-162395834	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs182164505	chr6:162395866-162395867	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs139077288	chr6:162395939-162395940	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs138051008	chr6:162395959-162395960	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs542167554	chr6:162395974-162395975	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs201148327	chr6:162395977-162395978	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs558933793	chr6:162395985-162395986	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs554442833	chr6:162396095-162396096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs186292463	chr6:162396099-162396100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs544797720	chr6:162396103-162396104	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs188468357	chr6:162396113-162396114	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs557789379	chr6:162396175-162396176	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs530605565	chr6:162396180-162396181	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Schizophrenia	20967226	CNVD
Bipolar disorder	19114987	CNVD
early-passage human iPS cells	21368824	CNVD
Parkinson disease	21829596	CNVD
Schizophrenia	23813976	CNVD
Gastric cancer	22315472	CNVD
Autism	19404257	CNVD
Schizophrenia	21346763	CNVD

Chromatin state (count:638 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162382800-162396600	Weak transcription	Aorta	Aorta
2	chr6:162392600-162395000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:162392600-162395600	Weak transcription	Adipose Nuclei	Adipose
4	chr6:162394600-162395400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:162395000-162396400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:162395400-162396000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:162395400-162400000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:162395600-162396000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:162396400-162399600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:162396600-162397000	ZNF genes & repeats	Aorta	Aorta
11	chr6:162397200-162397400	Weak transcription	Gastric	stomach
12	chr6:162397400-162397600	Enhancers	Gastric	stomach
13	chr6:162399600-162400000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:162400000-162405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:162401400-162401800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:162401400-162401800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:162401400-162401800	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:162401800-162405800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:162401800-162405800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:162405800-162407400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:162405800-162408000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:162405800-162408000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:162406200-162406400	Enhancers	Fetal Intestine Small	intestine
24	chr6:162407400-162410800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:162410400-162411200	ZNF genes & repeats	Aorta	Aorta
26	chr6:162410600-162411400	ZNF genes & repeats	Pancreas	Pancrea
27	chr6:162411000-162411200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:162411400-162416600	Weak transcription	Pancreas	Pancrea
29	chr6:162413200-162413400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:162418600-162419800	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr6:162425400-162425600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:162425600-162427400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:162425600-162427400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:162435000-162435200	Enhancers	HepG2	liver
35	chr6:162435200-162435600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:162435200-162435600	Enhancers	Placenta Amnion	Placenta Amnion
37	chr6:162435200-162435600	Flanking Active TSS	HepG2	liver
38	chr6:162437800-162438000	ZNF genes & repeats	Pancreas	Pancrea
39	chr6:162438000-162444600	Weak transcription	Pancreas	Pancrea
40	chr6:162444200-162444600	Enhancers	Stomach Mucosa	stomach
41	chr6:162444600-162444800	ZNF genes & repeats	Pancreas	Pancrea
42	chr6:162444600-162448200	Weak transcription	Stomach Mucosa	stomach
43	chr6:162444800-162452200	Weak transcription	Pancreas	Pancrea
44	chr6:162446400-162449800	Weak transcription	Ovary	ovary
45	chr6:162446600-162447000	Enhancers	Fetal Brain Male	brain
46	chr6:162447000-162447200	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr6:162447000-162448600	Enhancers	Duodenum Mucosa	Duodenum
48	chr6:162447000-162448600	Enhancers	Fetal Intestine Small	intestine
49	chr6:162447200-162447800	Enhancers	Fetal Kidney	kidney
50	chr6:162447200-162447800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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