Variant report
Variant | nsv1016210 |
---|---|
Chromosome Location | chr7:15405382-15434633 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:130)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr7:15416281-15416587 | HepG2 | liver: | n/a | n/a |
2 | CEBPB | chr7:15426024-15426286 | HepG2 | liver: | n/a | chr7:15426145-15426154 chr7:15426143-15426154 |
3 | CEBPB | chr7:15415765-15415909 | HepG2 | liver: | n/a | n/a |
4 | CEBPB | chr7:15405781-15406007 | HepG2 | liver: | n/a | n/a |
5 | CEBPB | chr7:15408089-15408100 | K562 | blood: | n/a | n/a |
6 | CEBPB | chr7:15405775-15405910 | HepG2 | liver: | n/a | n/a |
7 | CTCF | chr7:15428800-15428950 | GM12878 | blood: | n/a | n/a |
8 | CTCF | chr7:15409109-15409208 | Medullo | brain: | n/a | n/a |
9 | CTCF | chr7:15428940-15429090 | RPTEC | kidney: | n/a | n/a |
10 | CTCF | chr7:15406442-15406510 | Lung_OC | lung: | n/a | n/a |
11 | CTCF | chr7:15428840-15428990 | GM12871 | blood: | n/a | n/a |
12 | CTCF | chr7:15428820-15428970 | AG10803 | skin: | n/a | n/a |
13 | CTCF | chr7:15428880-15429030 | HVMF | connective: | n/a | n/a |
14 | CTCF | chr7:15428720-15428870 | HRPEpiC | eye: | n/a | n/a |
15 | CTCF | chr7:15409020-15409170 | HEK293 | kidney: | n/a | n/a |
16 | CTCF | chr7:15428760-15428910 | HEK293 | kidney: | n/a | n/a |
17 | CTCF | chr7:15409020-15409170 | AG04450 | lung: | n/a | n/a |
18 | CTCF | chr7:15409120-15409270 | Caco-2 | colon: | n/a | n/a |
19 | CTCF | chr7:15428794-15428936 | Gliobla | brain: | n/a | n/a |
20 | CTCF | chr7:15428920-15429070 | AG04450 | lung: | n/a | n/a |
21 | CTCF | chr7:15428740-15428890 | HBMEC | blood vessel: | n/a | n/a |
22 | CTCF | chr7:15428760-15428910 | BE2_C | brain: | n/a | n/a |
23 | CTCF | chr7:15428860-15429010 | Caco-2 | colon: | n/a | n/a |
24 | CTCF | chr7:15408960-15409110 | HCT-116 | colon: | n/a | n/a |
25 | CTCF | chr7:15428760-15428910 | AG09309 | skin: | n/a | n/a |
26 | CTCF | chr7:15409060-15409210 | BE2_C | brain: | n/a | n/a |
27 | CTCF | chr7:15409138-15409217 | Gliobla | brain: | n/a | n/a |
28 | CTCF | chr7:15410663-15410717 | GM20000 | blood: | n/a | n/a |
29 | CTCF | chr7:15428900-15429050 | HRPEpiC | eye: | n/a | n/a |
30 | CTCF | chr7:15428820-15428970 | HEK293 | kidney: | n/a | n/a |
31 | CTCF | chr7:15428844-15428968 | MCF-7 | breast: | n/a | n/a |
32 | CTCF | chr7:15428860-15429010 | HPAF | blood vessel: | n/a | n/a |
33 | CTCF | chr7:15428840-15428990 | SAEC | small airway: | n/a | n/a |
34 | CTCF | chr7:15411227-15411266 | GM13976 | blood: | n/a | n/a |
35 | CTCF | chr7:15429180-15429330 | HFF | foreskin: | n/a | n/a |
36 | CTCF | chr7:15409020-15409170 | HRPEpiC | eye: | n/a | n/a |
37 | CTCF | chr7:15428851-15428977 | Medullo | brain: | n/a | n/a |
38 | CTCF | chr7:15428854-15428952 | LNCaP | prostate: | n/a | n/a |
39 | CTCF | chr7:15428860-15429010 | HMF | breast: | n/a | n/a |
40 | CTCF | chr7:15428780-15428930 | BJ | skin: | n/a | n/a |
41 | CTCF | chr7:15428760-15428910 | GM12875 | blood: | n/a | n/a |
42 | CTCF | chr7:15428860-15429010 | HFF | foreskin: | n/a | n/a |
43 | CTCF | chr7:15428820-15428970 | GM12874 | blood: | n/a | n/a |
44 | CTCF | chr7:15428740-15428890 | HPF | lung: | n/a | n/a |
45 | CTCF | chr7:15428864-15428936 | Hela-S3 | cervix: | n/a | n/a |
46 | CTCF | chr7:15428817-15428906 | K562 | blood: | n/a | n/a |
47 | CTCF | chr7:15409120-15409270 | HCPEpiC | choroid plexus: | n/a | n/a |
48 | CTCF | chr7:15428800-15428950 | AG04449 | skin: | n/a | n/a |
49 | CTCF | chr7:15409157-15409165 | Hela-S3 | cervix: | n/a | n/a |
50 | CTCF | chr7:15428800-15428950 | AG09319 | gingival: | n/a | n/a |
No data |
(count:2 , 50 per page) page:
1
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-MEOX2-6 | chr7:15433738-15433804 | NONHSAT119276 |
No data |
No data |
Variant related genes | Relation type |
---|---|
AGMO | TF binding region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs10238331 | chr7:15405382-15405383 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs182350213 | chr7:15405385-15405386 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs555438537 | chr7:15405396-15405397 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs561426190 | chr7:15405406-15405407 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs573662856 | chr7:15405409-15405410 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs200744461 | chr7:15405410-15405411 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs537997142 | chr7:15405415-15405416 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs556415919 | chr7:15405423-15405424 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs577973946 | chr7:15405483-15405484 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs186483872 | chr7:15405491-15405492 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs112711538 | chr7:15405495-15405496 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs560471944 | chr7:15405528-15405529 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs191319746 | chr7:15405541-15405542 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs183576058 | chr7:15405562-15405563 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs143806082 | chr7:15405577-15405578 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs370683721 | chr7:15405610-15405611 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs188253614 | chr7:15405619-15405620 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs565154903 | chr7:15405623-15405624 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs540284539 | chr7:15405632-15405633 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs532602071 | chr7:15405636-15405637 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs374069619 | chr7:15405641-15405642 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs566080028 | chr7:15405647-15405648 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs192207054 | chr7:15405653-15405654 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs548703216 | chr7:15405668-15405669 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs116651777 | chr7:15405678-15405679 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs537559178 | chr7:15405689-15405690 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs114365486 | chr7:15405690-15405691 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs371354292 | chr7:15405691-15405692 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs571442961 | chr7:15405711-15405712 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs369242794 | chr7:15405715-15405716 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs538881554 | chr7:15405718-15405719 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs374734601 | chr7:15405721-15405722 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs369964253 | chr7:15405744-15405745 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs145243646 | chr7:15405785-15405786 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs148468381 | chr7:15405811-15405812 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs554097131 | chr7:15405823-15405824 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs183233132 | chr7:15405840-15405841 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs375393392 | chr7:15405853-15405854 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs201395956 | chr7:15405858-15405859 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs62450359 | chr7:15405866-15405867 | Weak transcription | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
41 | rs373051569 | chr7:15405872-15405873 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs377234495 | chr7:15405879-15405880 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs370445760 | chr7:15405889-15405890 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs367679295 | chr7:15405895-15405896 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs554690093 | chr7:15405905-15405906 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs117783846 | chr7:15405908-15405909 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs543495583 | chr7:15405909-15405910 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs372889151 | chr7:15405924-15405925 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs565067260 | chr7:15405936-15405937 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs532565160 | chr7:15405983-15405984 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Lynch syndrome | 18415027 | CNVD |
Biliary cancer | 19435499 | CNVD |
Cancer | 16751803 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Wilms tumour | 21544195 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Astrocytoma | 17387387 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Glioma | 21971842 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Oral cancer | 21386901 | CNVD |
colon cancer | 17210682 | CNVD |
Lung adenocarcinoma | 21810691 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Hypothalamic hamartomas | 18252217 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Peripheral t-cell lymphoma | 19118030 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Seminomas | 18059402 | CNVD |
Testicular cancer | 18059402 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Autism | 19415332 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Malaria | 21533027 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
head and neck squamous cell carcinoma | 19289630 | CNVD |
Stenocardia | 21860640 | CNVD |
Vasospasm | 21860640 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21364760 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Leukemia | 23979775 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Autism | 22495311 | CNVD |
Prostate cancer | 16573809 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Melanoma | 17363583 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Prostate cancer | 19242612 | CNVD |
Autism | 18414403 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 21858162 | CNVD |
Pleomorphic liposarcoma | 18784837 | CNVD |
Gastrointestinal stromal cancer | 20877625 | CNVD |
Cancer | 21637783 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Breast cancer | 16397240 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Heart disease | 21282601 | CNVD |
Rubinstein-Taybi syndrome | 22470819 | CNVD |
Alzheimer''s disease | 22166940 | CNVD |
Abnormal phenotypes | 18644119 | CNVD |
Non-syndromic sensorineural hearing loss | 22570644 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Breast cancer | 22522925 | CNVD |
Schizophrenia | 23813976 | CNVD |
Bladder cancer | 21909424 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:15403800-15413800 | Weak transcription | Left Ventricle | heart |
2 | chr7:15405200-15414400 | Weak transcription | Liver | Liver |
3 | chr7:15409800-15410400 | Active TSS | Brain Hippocampus Middle | brain |
4 | chr7:15409800-15410600 | Enhancers | Brain Angular Gyrus | brain |
5 | chr7:15410000-15412800 | Weak transcription | Right Atrium | heart |
6 | chr7:15414400-15414600 | Enhancers | Liver | Liver |
7 | chr7:15414600-15414800 | Enhancers | Muscle Satellite Cultured Cells | -- |
8 | chr7:15414600-15415000 | Weak transcription | Liver | Liver |
9 | chr7:15414800-15415800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
10 | chr7:15415000-15416200 | Enhancers | Liver | Liver |
11 | chr7:15415600-15416400 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
12 | chr7:15415600-15417200 | Enhancers | Osteobl | bone |
13 | chr7:15415800-15417200 | Enhancers | Muscle Satellite Cultured Cells | -- |
14 | chr7:15416200-15417200 | Flanking Active TSS | Liver | Liver |
15 | chr7:15416400-15416800 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
16 | chr7:15416400-15417000 | Flanking Active TSS | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
17 | chr7:15416600-15417000 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
18 | chr7:15417200-15417600 | Enhancers | Liver | Liver |
19 | chr7:15417200-15418400 | Weak transcription | Osteobl | bone |
20 | chr7:15417600-15421000 | Weak transcription | Liver | Liver |
21 | chr7:15418400-15418600 | Enhancers | Osteobl | bone |
22 | chr7:15421000-15423000 | Strong transcription | Liver | Liver |
23 | chr7:15423000-15426600 | Weak transcription | Liver | Liver |
24 | chr7:15426600-15430000 | Strong transcription | Liver | Liver |
25 | chr7:15429600-15430400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
26 | chr7:15430000-15436400 | Weak transcription | Liver | Liver |