Variant report

Variant	nsv1016539
Chromosome Location	chr7:149904045-149967986
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:17)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:149757556..149758057-chr7:149919306..149919858,2	MCF-7	breast:
2	chr7:149904533..149906054-chr7:153459094..153460640,2	K562	blood:

(count:17 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACTR3C-2	chr7:149917353-149917587	XLOC_006644
2	lnc-LRRC61-5	chr7:149929034-149929094	NONHSAT124098
3	lnc-LRRC61-5	chr7:149929649-149932634	NONHSAT124098
4	lnc-LRRC61-5	chr7:149922268-149923842	NONHSAT124098
5	lnc-LRRC61-5	chr7:149924600-149925721	NONHSAT124098
6	lnc-ACTR3C-2	chr7:149917334-149917567	XLOC_006644
7	lnc-ACTR3C-1	chr7:149927175-149927545	XLOC_006645
8	lnc-LRRC61-6	chr7:149920801-149921193	NONHSAT124097
9	lnc-ACTR3C-2	chr7:149918021-149918381	XLOC_006644
10	lnc-ACTR3C-1	chr7:149930124-149932342	XLOC_006645
11	lnc-LRRC61-5	chr7:149927174-149927585	NONHSAT124098
12	lnc-LRRC61-5	chr7:149934644-149934873	NONHSAT124098
13	lnc-LRRC61-5	chr7:149927946-149928590	NONHSAT124098
14	lnc-ACTR3C-1	chr7:149929650-149932342	XLOC_006645
15	lnc-LRRC61-6	chr7:149920552-149920586	NONHSAT124097
16	lnc-ACTR3C-1	chr7:149934645-149934670	XLOC_006645
17	lnc-ACTR3C-1	chr7:149934645-149934873	XLOC_006645

No data

Variant related genes	Relation type
ZEB2	miRNA target sites
SMURF2	miRNA target sites
ALDOA	miRNA target sites

Extended variants
information (count: 1733 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1733 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573078607	chr7:149904123-149904124	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs191639886	chr7:149904146-149904147	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs59288908	chr7:149904149-149904150	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs530531149	chr7:149904150-149904151	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs544148464	chr7:149904185-149904186	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs560711736	chr7:149904196-149904197	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs529749829	chr7:149904197-149904198	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546893275	chr7:149904262-149904263	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs537492585	chr7:149904282-149904283	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184226910	chr7:149904302-149904303	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532309402	chr7:149904315-149904316	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs552093619	chr7:149904328-149904329	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs571664995	chr7:149904330-149904331	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs187411634	chr7:149904348-149904349	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs557472732	chr7:149904435-149904436	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs567539817	chr7:149904477-149904478	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs116550406	chr7:149904530-149904531	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs116117727	chr7:149904549-149904550	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs369766288	chr7:149904554-149904555	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141843910	chr7:149904567-149904568	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs538808104	chr7:149904573-149904574	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs558888733	chr7:149904583-149904584	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs575835192	chr7:149904675-149904676	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs543955950	chr7:149904676-149904677	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201043263	chr7:149904718-149904719	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561065651	chr7:149904790-149904791	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574456808	chr7:149904815-149904816	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs193061064	chr7:149904864-149904865	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs560445820	chr7:149904873-149904874	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs532448629	chr7:149904915-149904916	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs552487760	chr7:149904936-149904937	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201289918	chr7:149904952-149904953	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs562536481	chr7:149904980-149904981	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369549046	chr7:149904999-149905000	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs578202661	chr7:149905048-149905049	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545328163	chr7:149905057-149905058	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs368106406	chr7:149905099-149905100	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572589130	chr7:149905100-149905101	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs536212257	chr7:149905142-149905143	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs185296410	chr7:149905161-149905162	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs140385588	chr7:149905213-149905214	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs144336360	chr7:149905260-149905261	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs559235972	chr7:149905261-149905262	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs147509748	chr7:149905267-149905268	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs4015637	chr7:149905383-149905384	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7811184	chr7:149905447-149905448	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs145381667	chr7:149905448-149905449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs57207378	chr7:149905481-149905482	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs2533173	chr7:149905496-149905497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs2533174	chr7:149905543-149905544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Congenital long qt syndrome	19214780	CNVD

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149900200-149917200	Weak transcription	Gastric	stomach
2	chr7:149902600-149904600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr7:149902600-149905400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:149903200-149904400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr7:149916800-149917000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:149916800-149917200	Active TSS	Brain Germinal Matrix	brain
7	chr7:149917000-149917200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:149917000-149917200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:149917000-149917200	Enhancers	Primary hematopoietic stem cells	blood
10	chr7:149917000-149917200	Active TSS	Brain Angular Gyrus	brain
11	chr7:149917000-149917200	Active TSS	Brain Hippocampus Middle	brain
12	chr7:149917000-149917200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr7:149917000-149917400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:149917000-149917400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:149917000-149917600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr7:149917000-149917800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:149917000-149917800	Active TSS	Stomach Smooth Muscle	stomach
18	chr7:149917000-149917800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
19	chr7:149917000-149918000	Active TSS	Brain Anterior Caudate	brain
20	chr7:149917000-149918200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
21	chr7:149917000-149918200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
22	chr7:149917000-149918200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr7:149917000-149918200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
24	chr7:149917000-149918200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr7:149917000-149918200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr7:149917000-149918200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr7:149917000-149918200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr7:149917000-149918200	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr7:149917000-149918200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
30	chr7:149917000-149918400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr7:149917000-149918400	Enhancers	Liver	Liver
32	chr7:149917000-149918400	Bivalent/Poised TSS	Fetal Brain Female	brain
33	chr7:149917000-149918400	Enhancers	Lung	lung
34	chr7:149917000-149918400	Enhancers	Pancreas	Pancrea
35	chr7:149917200-149917400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
36	chr7:149917200-149917400	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:149917200-149917400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:149917200-149917400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:149917200-149917400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:149917200-149917400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
41	chr7:149917200-149917400	Bivalent Enhancer	Fetal Brain Male	brain
42	chr7:149917200-149917800	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr7:149917200-149918000	Active TSS	Primary hematopoietic stem cells	blood
44	chr7:149917200-149918000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:149917200-149918000	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr7:149917200-149918000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
47	chr7:149917200-149918200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
48	chr7:149917200-149918200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
49	chr7:149917200-149918200	Enhancers	Gastric	stomach
50	chr7:149917200-149918400	Active TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links