Variant report

Variant	nsv1016572
Chromosome Location	chr9:43127213-43800174
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1910)
CpG islands
(count:367)
Chromatin interactive
region (count:0)
LncRNA
region (count:20)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1910 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:43498011-43498345	K562	blood:	n/a	n/a
2	ARID3A	chr9:43155080-43155340	K562	blood:	n/a	n/a
3	BACH1	chr9:43456004-43456520	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr9:43686226-43686817	H1-hESC	embryonic stem cell:	n/a	n/a
5	BATF	chr9:43369194-43369353	GM12878	blood:	n/a	n/a
6	BATF	chr9:43714519-43714714	GM12878	blood:	n/a	n/a
7	BATF	chr9:43127650-43128051	GM12878	blood:	n/a	n/a
8	BATF	chr9:43418592-43418991	GM12878	blood:	n/a	chr9:43418699-43418707
9	BATF	chr9:43391601-43391805	GM12878	blood:	n/a	n/a
10	BATF	chr9:43391498-43391789	GM12878	blood:	n/a	n/a
11	BATF	chr9:43488473-43488768	GM12878	blood:	n/a	chr9:43488642-43488653
12	BATF	chr9:43148308-43148516	GM12878	blood:	n/a	chr9:43148436-43148444
13	BATF	chr9:43397934-43398253	GM12878	blood:	n/a	n/a
14	BATF	chr9:43529040-43529422	GM12878	blood:	n/a	n/a
15	BATF	chr9:43133474-43133863	GM12878	blood:	n/a	n/a
16	BATF	chr9:43380741-43381310	GM12878	blood:	n/a	n/a
17	BATF	chr9:43653838-43653993	GM12878	blood:	n/a	n/a
18	BATF	chr9:43190031-43190229	GM12878	blood:	n/a	n/a
19	BATF	chr9:43152607-43152819	GM12878	blood:	n/a	n/a
20	BATF	chr9:43380711-43381300	GM12878	blood:	n/a	n/a
21	BATF	chr9:43139074-43139379	GM12878	blood:	n/a	n/a
22	BATF	chr9:43133516-43133712	GM12878	blood:	n/a	n/a
23	BATF	chr9:43393230-43393466	GM12878	blood:	n/a	n/a
24	BATF	chr9:43140357-43140594	GM12878	blood:	n/a	n/a
25	BATF	chr9:43418541-43419033	GM12878	blood:	n/a	chr9:43418699-43418707
26	BATF	chr9:43397875-43398296	GM12878	blood:	n/a	n/a
27	BATF	chr9:43446919-43447105	GM12878	blood:	n/a	n/a
28	BATF	chr9:43393256-43393475	GM12878	blood:	n/a	n/a
29	BATF	chr9:43445858-43446598	GM12878	blood:	n/a	n/a
30	BATF	chr9:43445830-43446625	GM12878	blood:	n/a	n/a
31	BATF	chr9:43127672-43127998	GM12878	blood:	n/a	n/a
32	BATF	chr9:43374503-43374725	GM12878	blood:	n/a	n/a
33	BATF	chr9:43392171-43392418	GM12878	blood:	n/a	n/a
34	BATF	chr9:43133225-43133467	GM12878	blood:	n/a	n/a
35	BATF	chr9:43139111-43139367	GM12878	blood:	n/a	n/a
36	BATF	chr9:43160512-43160671	GM12878	blood:	n/a	n/a
37	BCL11A	chr9:43127637-43128031	GM12878	blood:	n/a	chr9:43127900-43127909 chr9:43127967-43127976
38	BCL11A	chr9:43432708-43432921	GM12878	blood:	n/a	n/a
39	BCL11A	chr9:43133555-43134098	GM12878	blood:	n/a	n/a
40	BCL11A	chr9:43133803-43134053	GM12878	blood:	n/a	n/a
41	BCL11A	chr9:43140645-43140800	GM12878	blood:	n/a	n/a
42	BCL11A	chr9:43198110-43198378	GM12878	blood:	n/a	n/a
43	BCL11A	chr9:43142285-43142503	GM12878	blood:	n/a	n/a
44	BCL11A	chr9:43380710-43381295	GM12878	blood:	n/a	n/a
45	BCL11A	chr9:43206082-43206341	GM12878	blood:	n/a	n/a
46	BCL11A	chr9:43415815-43416061	GM12878	blood:	n/a	n/a
47	BCL11A	chr9:43133518-43133750	GM12878	blood:	n/a	n/a
48	BCL11A	chr9:43380719-43381302	GM12878	blood:	n/a	n/a
49	BCL11A	chr9:43139234-43139400	GM12878	blood:	n/a	n/a
50	BCL11A	chr9:43127700-43127994	GM12878	blood:	n/a	chr9:43127900-43127909 chr9:43127967-43127976

(count:367 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:43525320-43525370	Hepatocyte	liver:	n/a
2	chr9:43525320-43525370	Hepatocyte	liver:	n/a
3	chr9:43525948-43525998	Caco-2	colon:	n/a
4	chr9:43134033-43134083	A549	lung:	n/a
5	chr9:43134756-43134806	Hela-S3	cervix:	n/a
6	chr9:43525320-43525370	NB4	blood:	n/a
7	chr9:43525948-43525998	GM06990	blood:	n/a
8	chr9:43525948-43525998	SKMC	muscle:	n/a
9	chr9:43134756-43134806	HepG2	liver:	n/a
10	chr9:43525320-43525370	AG10803	skin:	n/a
11	chr9:43631161-43631211	AG04450	lung:	fetal
12	chr9:43631161-43631211	SK-N-SH_RA	brain:	n/a
13	chr9:43525948-43525998	GM12892	blood:	n/a
14	chr9:43631161-43631211	HPAEpiC	pulmonary alveolar:	n/a
15	chr9:43631161-43631211	BE2_C	brain:	n/a
16	chr9:43525320-43525370	HCM	heart:	n/a
17	chr9:43134033-43134083	GM19239	blood:	n/a
18	chr9:43135418-43135468	GM12878	blood:	n/a
19	chr9:43525948-43525998	ovcar-3	ovarian:	n/a
20	chr9:43134756-43134806	T-47D	breast:	n/a
21	chr9:43631161-43631211	HCF	heart:	n/a
22	chr9:43134756-43134806	NH-A	brain:	n/a
23	chr9:43525948-43525998	HNPCEpiC	eye:	n/a
24	chr9:43525320-43525370	NT2-D1	testis:	n/a
25	chr9:43134033-43134083	HRE	kidney:	n/a
26	chr9:43525948-43525998	HRPEpiC	eye:	n/a
27	chr9:43134756-43134806	BE2_C	brain:	n/a
28	chr9:43134033-43134083	Hela-S3	cervix:	n/a
29	chr9:43525948-43525998	CMK	blood:	n/a
30	chr9:43134033-43134083	MCF10A-Er-Src	breast:	n/a
31	chr9:43135418-43135468	T-47D	breast:	n/a
32	chr9:43525948-43525998	U87	brain:	n/a
33	chr9:43525320-43525370	MCF-7	breast:	n/a
34	chr9:43134756-43134806	ovcar-3	ovarian:	n/a
35	chr9:43525948-43525998	BE2_C	brain:	n/a
36	chr9:43631161-43631211	GM06990	blood:	n/a
37	chr9:43134756-43134806	AoSMC	blood vessel:	n/a
38	chr9:43525320-43525370	SK-N-SH	brain:	n/a
39	chr9:43134033-43134083	HCPEpiC	choroid plexus:	n/a
40	chr9:43134033-43134083	MCF-7	breast:	n/a
41	chr9:43135418-43135468	HRE	kidney:	n/a
42	chr9:43134756-43134806	PANC-1	pancreas:	n/a
43	chr9:43525320-43525370	AoSMC	blood vessel:	n/a
44	chr9:43134033-43134083	PFSK-1	brain:	n/a
45	chr9:43135418-43135468	BJ	skin:	n/a
46	chr9:43525320-43525370	PFSK-1	brain:	n/a
47	chr9:43134756-43134806	BJ	skin:	n/a
48	chr9:43525320-43525370	HIPEpiC	eye:	n/a
49	chr9:43134033-43134083	Hepatocyte	liver:	n/a
50	chr9:43631161-43631211	HIPEpiC	eye:	n/a

No data

(count:20 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD20A3-13	chr9:43627769-43628378	NONHSAT131362
2	lnc-ANKRD20A3-7	chr9:43174019-43175549	NONHSAT131355
3	lnc-ANKRD20A3-11	chr9:43319264-43319576	NONHSAT131357
4	lnc-CNTNAP3B-6	chr9:43399987-43401315	NONHSAT131358
5	lnc-CNTNAP3B-2	chr9:43617727-43618056	NONHSAT131361
6	lnc-ANKRD20A3-7	chr9:43177955-43178014	NONHSAT131355
7	lnc-ANKRD20A3-7	chr9:43179365-43179407	NONHSAT131355
8	lnc-ANKRD20A3-7	chr9:43178104-43178145	NONHSAT131355
9	lnc-ANKRD20A3-1	chr9:43151785-43152008	XLOC_007693
10	lnc-ANKRD20A3-1	chr9:43159864-43160103	XLOC_007693
11	lnc-ANKRD20A3-13	chr9:43628634-43628694	NONHSAT131362
12	lnc-ANKRD20A3-1	chr9:43144980-43145567	XLOC_007693
13	lnc-ANKRD20A3-1	chr9:43159864-43160008	XLOC_007693
14	lnc-ANKRD20A3-1	chr9:43151637-43152008	XLOC_007693
15	lnc-ANKRD20A3-13	chr9:43629020-43629117	NONHSAT131362
16	lnc-FAM75A6-10	chr9:43130533-43130803	NONHSAT131349
17	lnc-FAM75A6-10	chr9:43132625-43132735	NONHSAT131349
18	lnc-CNTNAP3B-5	chr9:43403148-43403646	NONHSAT131359
19	lnc-ANKRD20A3-7	chr9:43177211-43177295	NONHSAT131355
20	lnc-ANKRD20A3-11	chr9:43318619-43318952	NONHSAT131357

No data

Variant related genes	Relation type
ENSG00000236322	TF binding region
ENSG00000239986	TF binding region
ENSG00000223512	TF binding region
ENSG00000269474	TF binding region
SPATA31A6	TF binding region
ENSG00000224303	TF binding region
MEP1AP3	TF binding region
ENSG00000233074	TF binding region
ENSG00000232866	TF binding region
RNU6-538P	TF binding region
ATP5A1P5	TF binding region
ANKRD20A3	TF binding region
ENSG00000197805	TF binding region
ENSG00000224828	TF binding region
CNTNAP3B	TF binding region
ENSG00000236322	CpG island
ENSG00000239986	CpG island
ENSG00000223512	CpG island
ENSG00000269474	CpG island
SPATA31A6	CpG island
ENSG00000224303	CpG island
MEP1AP3	CpG island
ENSG00000233074	CpG island
ENSG00000232866	CpG island
RNU6-538P	CpG island
ATP5A1P5	CpG island
ANKRD20A3	CpG island
ENSG00000197805	CpG island
ENSG00000224828	CpG island
CNTNAP3B	CpG island

Extended variants
information (count: 3785 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:3785 , 50 per page) page: 1 2 3 4 5 6 7 ... 76

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199845872	chr9:43127243-43127244	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs543578923	chr9:43127244-43127245	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs529951039	chr9:43127664-43127665	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs55787202	chr9:43127686-43127687	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs569871855	chr9:43127688-43127689	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs10125341	chr9:43127706-43127707	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs375720112	chr9:43127827-43127828	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs12553317	chr9:43127833-43127834	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs536833090	chr9:43127841-43127842	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs12555609	chr9:43127847-43127848	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs200865099	chr9:43127849-43127850	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs552281932	chr9:43127895-43127896	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs2633917	chr9:43130200-43130201	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs3091303	chr9:43130305-43130306	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs62553490	chr9:43130360-43130361	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs2633918	chr9:43130560-43130561	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs62553491	chr9:43130594-43130595	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs11262165	chr9:43130671-43130672	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs11262164	chr9:43130703-43130704	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs536186353	chr9:43131135-43131136	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs371700412	chr9:43131208-43131209	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs62553493	chr9:43131328-43131329	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs201332566	chr9:43132462-43132463	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs371518899	chr9:43132521-43132522	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs7035214	chr9:43132536-43132537	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs62553495	chr9:43132548-43132549	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs78608031	chr9:43132564-43132565	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs371746412	chr9:43132602-43132603	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs7038118	chr9:43132642-43132643	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs375199204	chr9:43132650-43132651	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
31	rs201932711	chr9:43132698-43132699	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs200082545	chr9:43132774-43132775	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs200821914	chr9:43132793-43132794	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs557356585	chr9:43132807-43132808	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs374684357	chr9:43133000-43133001	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs368878424	chr9:43133025-43133026	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs372632053	chr9:43133030-43133031	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs375952751	chr9:43133083-43133084	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs188121536	chr9:43133108-43133109	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs373019216	chr9:43133135-43133136	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs546394709	chr9:43133148-43133149	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs564985880	chr9:43133157-43133158	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs576970317	chr9:43133162-43133163	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs541028828	chr9:43133166-43133167	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs559345613	chr9:43133187-43133188	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs371580435	chr9:43133195-43133196	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs113486726	chr9:43133208-43133209	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs548497257	chr9:43133219-43133220	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs563413265	chr9:43133235-43133236	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs10909476	chr9:43133252-43133253	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Oral cancer	21386901	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	20409316	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Lung adenocarcinoma	17086460	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	22522925	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Lung cancer	17086460	CNVD
Rhabdomyosarcoma	16790082	CNVD

Chromatin state (count:383 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:43133000-43133200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:43133000-43133800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:43133000-43133800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:43133000-43134200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:43133000-43134200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:43133000-43134200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:43133000-43134800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:43133000-43135000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:43133000-43135000	Active TSS	Brain Germinal Matrix	brain
10	chr9:43133200-43134000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr9:43133200-43134000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:43133200-43134200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr9:43133200-43134200	Active TSS	Brain Angular Gyrus	brain
14	chr9:43133200-43134200	Active TSS	Esophagus	oesophagus
15	chr9:43133200-43134200	Active TSS	Right Ventricle	heart
16	chr9:43133600-43133800	Active TSS	Adipose Nuclei	Adipose
17	chr9:43133800-43134000	Active TSS	H1 Cell Line	embryonic stem cell
18	chr9:43133800-43134000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:43133800-43134000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:43133800-43134000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr9:43133800-43134000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:43133800-43134000	Active TSS	Fetal Intestine Large	intestine
23	chr9:43133800-43134000	Active TSS	Fetal Muscle Leg	muscle
24	chr9:43133800-43134000	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr9:43133800-43134000	Active TSS	HMEC	breast
26	chr9:43133800-43134000	Active TSS	NHEK	skin
27	chr9:43133800-43134200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:43133800-43134200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:43133800-43134200	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr9:43133800-43134200	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr9:43133800-43134200	Enhancers	Primary hematopoietic stem cells	blood
32	chr9:43133800-43134200	Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr9:43133800-43134200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr9:43133800-43134200	Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr9:43133800-43134200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr9:43133800-43134200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr9:43133800-43134200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:43133800-43134200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:43133800-43134200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:43133800-43134200	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr9:43133800-43134200	Active TSS	Brain Hippocampus Middle	brain
42	chr9:43133800-43134200	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr9:43133800-43134200	Active TSS	Duodenum Mucosa	Duodenum
44	chr9:43133800-43134200	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr9:43133800-43134200	Active TSS	Rectal Smooth Muscle	rectum
46	chr9:43133800-43134200	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr9:43133800-43134200	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr9:43133800-43134200	Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr9:43133800-43134200	Active TSS	Stomach Smooth Muscle	stomach
50	chr9:43133800-43134200	Active TSS	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links