Variant report

Variant	nsv1017270
Chromosome Location	chr4:130853337-130982586
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:130897732..130900472-chr4:130902946..130904619,2	K562	blood:
2	chr4:130897299..130899592-chr4:130899891..130901940,2	MCF-7	breast:
3	chr4:130897732..130900472-chr4:130902946..130904619,2	K562	blood:
4	chr4:130897299..130899592-chr4:130899891..130901940,2	MCF-7	breast:
5	chr4:130964047..130965735-chr4:130986640..130988918,2	MCF-7	breast:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C4orf33-6	chr4:130974815-130974929	ucscGeneNc_uc003igw_1
2	lnc-SCLT1-6	chr4:130890233-130890325	ucscGeneNc_uc003igv_2
3	lnc-C4orf33-1	chr4:130876407-130876523	NONHSAT098298
4	lnc-C4orf33-6	chr4:130954279-130954390	ucscGeneNc_uc003igw_1
5	lnc-SCLT1-6	chr4:130867527-130867638	ucscGeneNc_uc003igv_2
6	lnc-C4orf33-5	chr4:130947792-130947924	NONHSAT098302
7	lnc-C4orf33-6	chr4:130965945-130966057	ucscGeneNc_uc003igw_1
8	lnc-C4orf33-1	chr4:130874429-130874494	ENSG00000249618.1
9	lnc-C4orf33-1	chr4:130870232-130870292	NONHSAT098298
10	lnc-C4orf33-6	chr4:130920615-130920704	ucscGeneNc_uc003igw_1
11	lnc-C4orf33-1	chr4:130875533-130875731	ENSG00000249618.1
12	lnc-C4orf33-6	chr4:130943597-130943720	ucscGeneNc_uc003igw_1
13	lnc-SCLT1-6	chr4:130884913-130884984	ucscGeneNc_uc003igv_2
14	lnc-C4orf33-6	chr4:130953267-130953365	ucscGeneNc_uc003igw_1
15	lnc-C4orf33-1	chr4:130874429-130874494	NONHSAT098298
16	lnc-C4orf33-6	chr4:130947609-130947753	ucscGeneNc_uc003igw_1
17	lnc-SCLT1-6	chr4:130864777-130866394	ucscGeneNc_uc003igv_2
18	lnc-SCLT1-6	chr4:130912017-130912083	ucscGeneNc_uc003igv_2
19	lnc-C4orf33-1	chr4:130870232-130870292	ENSG00000249618.1
20	lnc-C4orf33-6	chr4:130952607-130952670	ucscGeneNc_uc003igw_1
21	lnc-C4orf33-5	chr4:130951771-130951912	NONHSAT098302
22	lnc-C4orf33-6	chr4:130977976-130978030	ucscGeneNc_uc003igw_1
23	lnc-C4orf33-1	chr4:130876407-130876523	ENSG00000249618.1
24	lnc-C4orf33-5	chr4:130948256-130948297	NONHSAT098302
25	lnc-C4orf33-1	chr4:130875533-130875731	NONHSAT098298

No data

Extended variants
information (count: 2562 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:2562 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559430315	chr4:130864805-130864806	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs532910496	chr4:130864842-130864843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs372061152	chr4:130864863-130864864	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs551413263	chr4:130864877-130864878	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs564525500	chr4:130864908-130864909	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs186053175	chr4:130864938-130864939	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs550100435	chr4:130864955-130864956	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs189500787	chr4:130864968-130864969	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs535483937	chr4:130865013-130865014	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs547494756	chr4:130865043-130865044	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs373997451	chr4:130865052-130865053	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs181776981	chr4:130865096-130865097	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs111506650	chr4:130865099-130865100	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs558186104	chr4:130865121-130865122	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs554521478	chr4:130865136-130865137	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs573012688	chr4:130865146-130865147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs116135035	chr4:130865172-130865173	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs537234393	chr4:130865185-130865186	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs534373355	chr4:130865209-130865210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs574457802	chr4:130865253-130865254	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs144884050	chr4:130865275-130865276	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs541307721	chr4:130865311-130865312	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs186178905	chr4:130865314-130865315	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs577516807	chr4:130865315-130865316	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs563958922	chr4:130865318-130865319	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs544820679	chr4:130865349-130865350	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs563386014	chr4:130865406-130865407	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs151329808	chr4:130865407-130865408	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs549939646	chr4:130865417-130865418	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs561917985	chr4:130865418-130865419	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs146506195	chr4:130865501-130865502	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs529558786	chr4:130865502-130865503	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs28846750	chr4:130865512-130865513	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs565944108	chr4:130865517-130865518	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs190647587	chr4:130865536-130865537	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs182779389	chr4:130865544-130865545	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs570151156	chr4:130865550-130865551	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs537273052	chr4:130865566-130865567	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs528170428	chr4:130865574-130865575	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs555624621	chr4:130865633-130865634	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs567436948	chr4:130865690-130865691	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs534915476	chr4:130865740-130865741	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs553226923	chr4:130865747-130865748	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs186486236	chr4:130865764-130865765	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs544971463	chr4:130865772-130865773	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs78323034	chr4:130865794-130865795	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs544899932	chr4:130865798-130865799	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs35950923	chr4:130865805-130865806	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs556806427	chr4:130865810-130865811	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs80256357	chr4:130865812-130865813	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
Olfactory neuroblastoma	18408657	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Gastric cancer	16891809	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:180 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130869400-130869600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:130879800-130882200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:130887000-130887600	Active TSS	Fetal Heart	heart
4	chr4:130887600-130891400	Weak transcription	Fetal Heart	heart
5	chr4:130888800-130890800	Enhancers	Dnd41	blood
6	chr4:130891400-130891600	Active TSS	Fetal Heart	heart
7	chr4:130891600-130891800	Enhancers	Brain Germinal Matrix	brain
8	chr4:130891800-130892800	Weak transcription	Brain Germinal Matrix	brain
9	chr4:130892000-130892800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:130892200-130892800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:130892400-130893000	Enhancers	Fetal Brain Male	brain
12	chr4:130892600-130893600	Enhancers	Fetal Brain Female	brain
13	chr4:130892800-130893200	Enhancers	Brain Germinal Matrix	brain
14	chr4:130899200-130901200	Enhancers	Dnd41	blood
15	chr4:130907400-130907800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:130907400-130907800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:130929800-130931200	Enhancers	Dnd41	blood
18	chr4:130930000-130930600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:130931000-130931400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:130931000-130931800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr4:130932600-130945000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:130941000-130941800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr4:130941200-130941400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
24	chr4:130941200-130941600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
25	chr4:130941400-130945000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:130941600-130943400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:130941800-130945000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr4:130942000-130943200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:130943000-130947200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr4:130943200-130952600	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr4:130943400-130943600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr4:130943400-130943600	Enhancers	Ovary	ovary
33	chr4:130943400-130945600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr4:130943400-130947000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:130943400-130947400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr4:130943600-130952600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr4:130943800-130945200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:130944000-130944200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr4:130944000-130945600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr4:130944200-130945000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr4:130944400-130944800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:130944800-130945200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:130945000-130945400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr4:130945000-130945600	Enhancers	H1 Cell Line	embryonic stem cell
45	chr4:130945000-130945600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr4:130945000-130945600	Enhancers	H9 Cell Line	embryonic stem cell
47	chr4:130945000-130946400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr4:130945000-130950400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:130945200-130945400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:130945200-130945400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links