Variant report

Variant	nsv1017724
Chromosome Location	chr6:77439868-77468454
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:77464445..77465326-chr7:1518971..1519642,2	MCF-7	breast:

Extended variants
information (count: 1596 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:1596 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4348275	chr6:77439868-77439869	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs188059629	chr6:77439870-77439871	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs112065728	chr6:77439904-77439905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs181026598	chr6:77439910-77439911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs562798915	chr6:77439927-77439928	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs574803101	chr6:77439939-77439940	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs137903486	chr6:77439940-77439941	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs571549518	chr6:77439952-77439953	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs752750	chr6:77439969-77439970	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs527347820	chr6:77439990-77439991	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs545926603	chr6:77440047-77440048	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs540312975	chr6:77440063-77440064	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs186339063	chr6:77440106-77440107	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs116646286	chr6:77440107-77440108	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs151120271	chr6:77440153-77440154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs79747443	chr6:77440154-77440155	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs34659623	chr6:77440155-77440156	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs397886459	chr6:77440172-77440173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs9443270	chr6:77440190-77440191	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs9443271	chr6:77440204-77440205	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs9447755	chr6:77440215-77440216	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs530337164	chr6:77440249-77440250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs9443272	chr6:77440256-77440257	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs191244050	chr6:77440266-77440267	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs9443273	chr6:77440296-77440297	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs150161693	chr6:77440310-77440311	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs181313003	chr6:77440318-77440319	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs9443274	chr6:77440335-77440336	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs9443275	chr6:77440341-77440342	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs574742161	chr6:77440365-77440366	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs540571599	chr6:77440366-77440367	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs185961648	chr6:77440402-77440403	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs553681036	chr6:77440448-77440449	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs138630178	chr6:77440452-77440453	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs545561248	chr6:77440464-77440465	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs9443276	chr6:77440503-77440504	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs375474522	chr6:77440525-77440526	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs542974553	chr6:77440577-77440578	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs190732741	chr6:77440581-77440582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs4235900	chr6:77440615-77440616	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs548905972	chr6:77440621-77440622	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs149302494	chr6:77440655-77440656	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs1545651	chr6:77440689-77440690	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs199755116	chr6:77440710-77440711	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs4706629	chr6:77440714-77440715	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs552518981	chr6:77440716-77440717	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs146796911	chr6:77440727-77440728	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs570924299	chr6:77440728-77440729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs112022949	chr6:77440758-77440759	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs538348782	chr6:77440775-77440776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77439200-77441000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr6:77441000-77452800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:77443200-77443600	Active TSS	Aorta	Aorta
4	chr6:77452400-77470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:77452800-77454400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr6:77454400-77456400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:77462400-77463000	Weak transcription	Aorta	Aorta
8	chr6:77463000-77463600	ZNF genes & repeats	Aorta	Aorta
9	chr6:77463400-77463800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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