Variant report

Variant	nsv1018092
Chromosome Location	chr7:13724921-13779479
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:13726746..13728268-chr7:14029761..14031968,2	K562	blood:
2	chr7:13739444..13741121-chr7:14029651..14032169,2	K562	blood:
3	chr7:13338594..13340126-chr7:13765044..13766926,2	K562	blood:
4	chr7:13321927..13322595-chr7:13765268..13765848,2	MCF-7	breast:
5	chr7:13319346..13320250-chr7:13765396..13766149,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARL4A-2	chr7:13770981-13771177	XLOC_005989
2	lnc-ARL4A-2	chr7:13772127-13773383	FPKM1_group_29192_transcript_5
3	lnc-ARL4A-2	chr7:13770980-13771177	FPKM1_group_29192_transcript_5
4	lnc-ARL4A-1	chr7:13743687-13743774	XLOC_005988
5	lnc-ARL4A-2	chr7:13770980-13771177	NONHSAT119255

No data

Variant related genes	Relation type
ENSG00000006468	chromatin interactions

Extended variants
information (count: 893 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:893 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75880621	chr7:13726766-13726767	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs542847772	chr7:13726794-13726795	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs11765668	chr7:13726841-13726842	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs539459293	chr7:13726852-13726853	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs183216740	chr7:13726855-13726856	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs7808903	chr7:13726860-13726861	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs535425257	chr7:13726861-13726862	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs545564476	chr7:13726865-13726866	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs555634423	chr7:13726870-13726871	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs571914876	chr7:13726908-13726909	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs540787185	chr7:13726928-13726929	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs7790088	chr7:13726959-13726960	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs576900818	chr7:13726960-13726961	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs369300060	chr7:13726975-13726976	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs546257116	chr7:13726978-13726979	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs534469601	chr7:13726990-13726991	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs568651230	chr7:13726992-13726993	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs11772536	chr7:13727027-13727028	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs543467224	chr7:13727029-13727030	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs372192484	chr7:13727132-13727133	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs548603953	chr7:13727159-13727160	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs7790285	chr7:13727173-13727174	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs527900464	chr7:13727201-13727202	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs561441964	chr7:13727240-13727241	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs118157096	chr7:13727242-13727243	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs571034561	chr7:13727249-13727250	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs376757378	chr7:13727279-13727280	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs143650615	chr7:13727318-13727319	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs374555616	chr7:13727319-13727320	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs546798381	chr7:13727331-13727332	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs560363502	chr7:13727340-13727341	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs12535279	chr7:13727348-13727349	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs551098476	chr7:13727362-13727363	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs7457198	chr7:13727402-13727403	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs535385037	chr7:13727423-13727424	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs571287256	chr7:13727426-13727427	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs555386414	chr7:13727453-13727454	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs66910950	chr7:13727458-13727459	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs534530212	chr7:13727461-13727462	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs557561192	chr7:13727476-13727477	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs577400880	chr7:13727507-13727508	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs546027351	chr7:13727510-13727511	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs58138787	chr7:13727525-13727526	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs550505216	chr7:13727540-13727541	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs576368436	chr7:13727652-13727653	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs542170370	chr7:13727683-13727684	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs562385815	chr7:13727708-13727709	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs377001589	chr7:13727755-13727756	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs146081807	chr7:13727763-13727764	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs528018254	chr7:13727764-13727765	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Medulloblastoma	17653508	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Cancer	17440070	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13735200-13735800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:13737400-13741800	Weak transcription	Fetal Brain Male	brain
3	chr7:13741800-13742000	Enhancers	Fetal Brain Male	brain
4	chr7:13742200-13742400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:13742400-13743000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:13742600-13743600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:13743000-13743600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:13743200-13744000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:13743600-13744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:13743600-13745400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:13745400-13746400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:13745600-13745800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:13752800-13753400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:13753200-13753600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:13753200-13753800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:13753400-13755200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:13754000-13756200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:13755000-13755600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:13757600-13758000	Enhancers	Fetal Heart	heart
20	chr7:13758000-13758200	Enhancers	Fetal Brain Male	brain
21	chr7:13763800-13764800	Enhancers	Fetal Brain Female	brain
22	chr7:13764000-13764400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr7:13764000-13765000	Enhancers	Fetal Brain Male	brain
24	chr7:13764400-13765400	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr7:13764600-13764800	Enhancers	Osteobl	bone
26	chr7:13764600-13765200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:13764800-13765200	Flanking Active TSS	Osteobl	bone
28	chr7:13765000-13766800	Weak transcription	Fetal Brain Male	brain
29	chr7:13767000-13767200	Enhancers	Fetal Brain Male	brain
30	chr7:13768000-13768200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:13770600-13772000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr7:13770800-13772000	Enhancers	Osteobl	bone

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