Variant report

Variant	nsv1018209
Chromosome Location	chr4:167497275-167663140
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:167423153..167423656-chr4:167515182..167515903,2	MCF-7	breast:
2	chr4:167086761..167087587-chr4:167515275..167516081,4	MCF-7	breast:
3	chr4:167546008..167548762-chr4:167550829..167552670,2	K562	blood:
4	chr4:167616122..167618390-chr4:167618848..167621322,2	MCF-7	breast:
5	chr4:167546008..167548762-chr4:167550829..167552670,2	K562	blood:
6	chr4:167245228..167246184-chr4:167515396..167516066,3	MCF-7	breast:
7	chr4:167552287..167553829-chr4:167557638..167559725,2	K562	blood:
8	chr4:167524991..167527331-chr4:167531005..167532808,2	K562	blood:
9	chr4:167407304..167409099-chr4:167497184..167500129,2	K562	blood:
10	chr4:167244994..167245863-chr4:167515216..167516030,3	MCF-7	breast:
11	chr4:167524991..167527331-chr4:167531005..167532808,2	K562	blood:
12	chr4:167090069..167090971-chr4:167515205..167515895,2	MCF-7	breast:
13	chr4:167616122..167618390-chr4:167618848..167621322,2	MCF-7	breast:
14	chr4:167552287..167553829-chr4:167557638..167559725,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TLL1-2	chr4:167642987-167643229	NONHSAT099116
2	lnc-TLL1-3	chr4:167647871-167649287	FPKM1_group_24427_transcript_4
3	lnc-TLL1-3	chr4:167648032-167648567	FPKM1_group_24427_transcript_4
4	lnc-TLL1-3	chr4:167649481-167650016	NONHSAT099117
5	lnc-TLL1-2	chr4:167646387-167646807	NONHSAT099116
6	lnc-TLL1-3	chr4:167647871-167649287	NONHSAT099117

No data

Extended variants
information (count: 3895 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:3895 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562536498	chr4:167499049-167499050	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs7665484	chr4:167499125-167499126	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs544906320	chr4:167499132-167499133	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs559987824	chr4:167499158-167499159	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs527306592	chr4:167499175-167499176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs548678754	chr4:167499180-167499181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs561083060	chr4:167499183-167499184	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs189653088	chr4:167502836-167502837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs75981898	chr4:167502867-167502868	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs374022002	chr4:167502931-167502932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs182326855	chr4:167502943-167502944	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs201339693	chr4:167502949-167502950	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs374292690	chr4:167502950-167502951	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs543988940	chr4:167502955-167502956	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs77273595	chr4:167502962-167502963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs556066785	chr4:167502977-167502978	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs185561593	chr4:167502978-167502979	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs145339553	chr4:167502989-167502990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs559905126	chr4:167502994-167502995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs9997441	chr4:167503000-167503001	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs542380599	chr4:167503023-167503024	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs115998873	chr4:167503025-167503026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs570459834	chr4:167503070-167503071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs191266517	chr4:167503079-167503080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs572008218	chr4:167503091-167503092	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs532864228	chr4:167503093-167503094	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs548021541	chr4:167503140-167503141	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs539238884	chr4:167503163-167503164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs183376747	chr4:167503166-167503167	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs536616232	chr4:167503185-167503186	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs548429168	chr4:167503187-167503188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs569793609	chr4:167503267-167503268	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs6813804	chr4:167503287-167503288	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs555934097	chr4:167503311-167503312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs577379730	chr4:167503346-167503347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs147673685	chr4:167503359-167503360	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs554008589	chr4:167503374-167503375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs570025060	chr4:167503435-167503436	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs188311910	chr4:167503483-167503484	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs80141530	chr4:167503503-167503504	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs6844850	chr4:167503505-167503506	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs6819455	chr4:167503519-167503520	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs543502939	chr4:167503534-167503535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs112279252	chr4:167503575-167503576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs77047137	chr4:167503607-167503608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs558482280	chr4:167503614-167503615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs368623862	chr4:167503615-167503616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs559981409	chr4:167503622-167503623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200502305	chr4:167503635-167503636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530069255	chr4:167503638-167503639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Glioblastoma multiforme	22286061	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16750200	CNVD
Colorectal cancer	16774939	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
intellectual deficit	22127048	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Schizophrenia	20967226	CNVD
Epilepsy	21635232	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Chronic lymphocytic leukemia	21215367	CNVD

Chromatin state (count:161 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:167499000-167499200	ZNF genes & repeats	Esophagus	oesophagus
2	chr4:167502800-167503600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:167503000-167503400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:167503600-167515400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:167515200-167515600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr4:167515400-167515600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:167515600-167523200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:167523200-167523400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr4:167523200-167523400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:167541600-167543000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:167543600-167544400	ZNF genes & repeats	GM12878-XiMat	blood
12	chr4:167550600-167551000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:167559000-167559400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:167577000-167579000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:167577200-167577400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr4:167577600-167578600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:167578000-167583400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:167578400-167578800	Enhancers	Placenta	Placenta
19	chr4:167578600-167579200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr4:167578800-167579400	ZNF genes & repeats	GM12878-XiMat	blood
21	chr4:167579400-167579800	Weak transcription	GM12878-XiMat	blood
22	chr4:167579800-167580600	Enhancers	GM12878-XiMat	blood
23	chr4:167580600-167581000	Weak transcription	GM12878-XiMat	blood
24	chr4:167581000-167582200	ZNF genes & repeats	GM12878-XiMat	blood
25	chr4:167581400-167581600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:167581800-167582000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr4:167582200-167583000	Weak transcription	GM12878-XiMat	blood
28	chr4:167582200-167583400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr4:167583000-167584400	Enhancers	GM12878-XiMat	blood
30	chr4:167583200-167584400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr4:167583200-167584600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr4:167583400-167583800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:167583400-167583800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr4:167583400-167584000	Enhancers	HMEC	breast
35	chr4:167583400-167584200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:167583400-167584200	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr4:167583400-167584400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr4:167583400-167584600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr4:167583800-167584000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:167584000-167590000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:167584200-167589800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:167584400-167584600	ZNF genes & repeats	GM12878-XiMat	blood
43	chr4:167589800-167591400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:167590000-167590200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:167591400-167592000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:167592000-167592400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr4:167595000-167596200	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr4:167596000-167596800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr4:167596800-167597000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:167597000-167602600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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