Variant report

Variant	nsv1018738
Chromosome Location	chr5:115540586-115553256
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LVRN.1-3	chr5:115549572-115550152	NONHSAT103355

Extended variants
information (count: 656 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:656 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112156775	chr5:115540586-115540587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs527726948	chr5:115540605-115540606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149042405	chr5:115540616-115540617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143181169	chr5:115540624-115540625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs527898985	chr5:115540637-115540638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs547943203	chr5:115540645-115540646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs185567428	chr5:115540654-115540655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138978216	chr5:115540664-115540665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs567603288	chr5:115540689-115540690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs142895268	chr5:115540702-115540703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537406093	chr5:115540750-115540751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs566194643	chr5:115540759-115540760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs147394089	chr5:115540760-115540761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs577840617	chr5:115540762-115540763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs1541654	chr5:115540836-115540837	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs138129557	chr5:115540843-115540844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573744435	chr5:115540851-115540852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs556781078	chr5:115540863-115540864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs554108371	chr5:115540935-115540936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs143077621	chr5:115541002-115541003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs562926499	chr5:115541063-115541064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376491185	chr5:115541074-115541075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs72804883	chr5:115541102-115541103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs545390075	chr5:115541117-115541118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs139244449	chr5:115541128-115541129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs528016816	chr5:115541148-115541149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs189230121	chr5:115541175-115541176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372403098	chr5:115541177-115541178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs561570293	chr5:115541186-115541187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs530185397	chr5:115541196-115541197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs181032610	chr5:115541216-115541217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs568577935	chr5:115541225-115541226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs149993410	chr5:115541233-115541234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs539211167	chr5:115541237-115541238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs184998757	chr5:115541245-115541246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs34688204	chr5:115541275-115541276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs1541655	chr5:115541277-115541278	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs374893041	chr5:115541319-115541320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs542662614	chr5:115541346-115541347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs188730702	chr5:115541354-115541355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs181166655	chr5:115541361-115541362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs573886598	chr5:115541404-115541405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575960900	chr5:115541431-115541432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs185912590	chr5:115541432-115541433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs72804884	chr5:115541433-115541434	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs576580139	chr5:115541434-115541435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs546339739	chr5:115541448-115541449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545497097	chr5:115541455-115541456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs191653393	chr5:115541501-115541502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572341779	chr5:115541514-115541515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Ovarian cancer	21720365	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Prostate cancer	16461572	CNVD
Myelofibrosis	22110671	CNVD
Sezary syndrome	18413736	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Glaucoma	21310917	CNVD
Glioblastoma multiforme	22286061	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Prostate cancer	22341455	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115518800-115548000	Weak transcription	Psoas Muscle	Psoas
2	chr5:115525800-115560000	Weak transcription	Left Ventricle	heart
3	chr5:115527800-115543800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:115537200-115559400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:115537400-115545000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:115537400-115560000	Weak transcription	Primary T cells from cord blood	blood
7	chr5:115537600-115542400	Weak transcription	Fetal Intestine Large	intestine
8	chr5:115537600-115560200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:115542600-115562800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:115543200-115543800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr5:115543800-115545800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:115544000-115544400	Enhancers	Ovary	ovary
13	chr5:115545800-115549600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:115547400-115548000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:115547400-115548200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:115548000-115548200	Enhancers	Psoas Muscle	Psoas
17	chr5:115549600-115550400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:115549800-115560000	Weak transcription	Fetal Intestine Small	intestine
19	chr5:115550400-115556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:115551800-115576400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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