Variant report

Variant	nsv1018900
Chromosome Location	chr6:93666816-93717031
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:93698868..93701522-chr6:93703182..93705134,2	MCF-7	breast:
2	chr6:93691182..93692729-chr6:93694302..93697274,2	K562	blood:
3	chr6:93698868..93701522-chr6:93703182..93705134,2	MCF-7	breast:
4	chr12:54136317..54137172-chr6:93686043..93686596,2	MCF-7	breast:
5	chr6:93691182..93692729-chr6:93694302..93697274,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MANEA-5	chr6:93689707-93689741	NONHSAT114018
2	lnc-MANEA-5	chr6:93695711-93695847	NONHSAT114018
3	lnc-MANEA-5	chr6:93690972-93691115	XLOC_005389
4	lnc-MANEA-5	chr6:93695712-93695847	XLOC_005389
5	lnc-MANEA-5	chr6:93690971-93691115	NONHSAT114018
6	lnc-MANEA-5	chr6:93689708-93689741	XLOC_005389

No data

Variant related genes	Relation type
UPF2	miRNA target sites
ZNF236	miRNA target sites
EDEM3	miRNA target sites

Extended variants
information (count: 550 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377010749	chr6:93672874-93672875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs534396285	chr6:93672893-93672894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs57211993	chr6:93672906-93672907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs577193268	chr6:93672948-93672949	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs150113433	chr6:93672953-93672954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs548955738	chr6:93672971-93672972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs567854686	chr6:93672972-93672973	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs189861054	chr6:93673005-93673006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs35472176	chr6:93673021-93673022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs34088201	chr6:93673036-93673037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs536718656	chr6:93673084-93673085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs138552715	chr6:93673129-93673130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs7742297	chr6:93673175-93673176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs539064279	chr6:93673177-93673178	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs568979495	chr6:93673187-93673188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs534254006	chr6:93674034-93674035	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs572426261	chr6:93674070-93674071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs1361177	chr6:93674075-93674076	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs554066224	chr6:93674081-93674082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs374431363	chr6:93674113-93674114	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs573476418	chr6:93674153-93674154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs368690609	chr6:93674211-93674212	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs542459042	chr6:93674232-93674233	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs530146217	chr6:93674238-93674239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs144181215	chr6:93674246-93674247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs76204514	chr6:93674355-93674356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs34356963	chr6:93674390-93674391	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs545092401	chr6:93674419-93674420	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs17528777	chr6:93674438-93674439	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs527300174	chr6:93674451-93674452	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs541347021	chr6:93674469-93674470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs537852361	chr6:93674472-93674473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs561597399	chr6:93674482-93674483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs201929540	chr6:93674560-93674561	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs142192956	chr6:93674567-93674568	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs151061367	chr6:93674612-93674613	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs570264434	chr6:93674689-93674690	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs140828724	chr6:93674697-93674698	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs552654758	chr6:93674711-93674712	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs111669667	chr6:93674786-93674787	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs574146857	chr6:93674815-93674816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs17437983	chr6:93674832-93674833	Enhancers	n/a	n/a	Overlapped CNVs	mRNA abundance
43	rs377149425	chr6:93674931-93674932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs2485797	chr6:93674940-93674941	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs144588327	chr6:93674953-93674954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs555895362	chr6:93674965-93674966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs575856046	chr6:93675003-93675004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs143199424	chr6:93675090-93675091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs369518438	chr6:93675107-93675108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs544973750	chr6:93675108-93675109	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Developmental delay	19490664	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Adrenocortical carcinoma	18281524	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Neuropathy	19664229	CNVD
Neurodevelopmental disorder	22521361	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Basal cell lymphoma	17170743	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93672800-93673200	Enhancers	Fetal Brain Female	brain
2	chr6:93674000-93675600	Enhancers	Fetal Heart	heart
3	chr6:93677200-93677400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:93686000-93686400	Enhancers	Small Intestine	intestine
5	chr6:93686000-93687800	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:93686400-93688800	Weak transcription	Small Intestine	intestine
7	chr6:93686600-93687200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr6:93687800-93689000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:93688400-93689400	Enhancers	HUVEC	blood vessel
10	chr6:93688600-93689600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:93688800-93689600	Enhancers	Fetal Heart	heart
12	chr6:93688800-93689600	Enhancers	Small Intestine	intestine
13	chr6:93689000-93689400	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:93689400-93694600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:93694600-93695800	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:93697800-93698000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:93698000-93699000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:93699000-93700200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:93699200-93700000	Enhancers	NH-A	brain
20	chr6:93699400-93700000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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