Variant report

Variant	nsv1019160
Chromosome Location	chr8:1367424-1380611
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:1369379..1372067-chr8:1377362..1378869,2	K562	blood:
2	chr8:1369379..1372067-chr8:1377362..1378869,2	K562	blood:
3	chr8:1370592..1372675-chr8:1374741..1377028,2	K562	blood:
4	chr8:1371175..1374145-chr8:1375528..1377809,2	K562	blood:
5	chr8:1371175..1374145-chr8:1375528..1377809,2	K562	blood:
6	chr8:1370592..1372675-chr8:1374741..1377028,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ERICH1-5	chr8:1376463-1377273	XLOC_006973
2	lnc-ERICH1-5	chr8:1377481-1378077	XLOC_006973

No data

Extended variants
information (count: 698 )
Associated
traits (count: 117 )

Variant overlapped rSNPs/rCNVs (count:698 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552980407	chr8:1367442-1367443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs112447320	chr8:1367472-1367473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs532662368	chr8:1367482-1367483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs113600016	chr8:1367487-1367488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs142626887	chr8:1367489-1367490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs552491233	chr8:1367494-1367495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs375982097	chr8:1367496-1367497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200851802	chr8:1367518-1367519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113120118	chr8:1367536-1367537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs7003649	chr8:1367561-1367562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs7003652	chr8:1367563-1367564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs113680585	chr8:1367577-1367578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs13277426	chr8:1367579-1367580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs6985142	chr8:1367588-1367589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs7387611	chr8:1367589-1367590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs4875847	chr8:1367591-1367592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs568023198	chr8:1367601-1367602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs199551864	chr8:1367606-1367607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs372660475	chr8:1367608-1367609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs71190735	chr8:1367640-1367641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147667283	chr8:1367641-1367642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs4876035	chr8:1367655-1367656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs556875911	chr8:1367682-1367683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs4875848	chr8:1367688-1367689	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs193225004	chr8:1367694-1367695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75379251	chr8:1367698-1367699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs183852417	chr8:1367708-1367709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs73530770	chr8:1367711-1367712	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs541029843	chr8:1367719-1367720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs188121138	chr8:1367720-1367721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs530089997	chr8:1367729-1367730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs543941089	chr8:1367735-1367736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs138322670	chr8:1367764-1367765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs4875849	chr8:1367774-1367775	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs181284780	chr8:1367780-1367781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs184320046	chr8:1367785-1367786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566004209	chr8:1367789-1367790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528770317	chr8:1367800-1367801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs79966335	chr8:1367814-1367815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs4875850	chr8:1367822-1367823	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs554959920	chr8:1367831-1367832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs188621459	chr8:1367835-1367836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs76083640	chr8:1367855-1367856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs56305805	chr8:1367856-1367857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs539612525	chr8:1367857-1367858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs369029987	chr8:1367858-1367859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs149651900	chr8:1367905-1367906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573136682	chr8:1367954-1367955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs542113119	chr8:1367960-1367961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs10086933	chr8:1367994-1367995	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:117)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Cancer	18840272	CNVD
Pilocytic astrocytoma	18622384	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	20729466	CNVD
Ductal carcinoma	22052326	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Autism	20531469	CNVD
Breast cancer	20932292	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Schizophrenia	23813976	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1366000-1370800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:1368600-1369400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:1368800-1369200	Enhancers	Fetal Lung	lung
4	chr8:1369800-1370000	Enhancers	Fetal Brain Male	brain
5	chr8:1370000-1370800	Weak transcription	Fetal Brain Male	brain
6	chr8:1370800-1371200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:1370800-1371600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:1370800-1372000	Enhancers	Fetal Brain Male	brain
9	chr8:1376600-1376800	Enhancers	Colon Smooth Muscle	Colon
10	chr8:1376600-1378600	Enhancers	Rectal Smooth Muscle	rectum
11	chr8:1376800-1377000	Enhancers	Fetal Brain Female	brain
12	chr8:1376800-1377200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr8:1376800-1377200	Enhancers	Right Atrium	heart
14	chr8:1376800-1377400	Flanking Active TSS	Colon Smooth Muscle	Colon
15	chr8:1377000-1377600	Enhancers	Fetal Stomach	stomach
16	chr8:1377000-1377800	Enhancers	Stomach Smooth Muscle	stomach
17	chr8:1377000-1378400	Enhancers	Fetal Brain Male	brain
18	chr8:1377000-1379400	Weak transcription	Fetal Brain Female	brain
19	chr8:1377400-1378200	Enhancers	Colon Smooth Muscle	Colon
20	chr8:1377800-1378000	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr8:1378200-1378800	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:1378400-1379600	Weak transcription	Fetal Brain Male	brain
23	chr8:1378800-1379000	Enhancers	Colon Smooth Muscle	Colon
24	chr8:1379400-1381000	Enhancers	Fetal Brain Female	brain
25	chr8:1379600-1381200	Enhancers	Fetal Brain Male	brain
26	chr8:1380200-1381000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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