Variant report

Variant	nsv1020917
Chromosome Location	chr8:1339570-1362466
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 560 )
Associated
traits (count: 119 )

Variant overlapped rSNPs/rCNVs (count:560 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10866924	chr8:1339570-1339571	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs371029811	chr8:1339575-1339576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs535018785	chr8:1339578-1339579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149736442	chr8:1339582-1339583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs574999640	chr8:1339627-1339628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145648451	chr8:1339641-1339642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs148865814	chr8:1339675-1339676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs77817164	chr8:1339677-1339678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs10866925	chr8:1339682-1339683	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs11136389	chr8:1339696-1339697	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs528032264	chr8:1339697-1339698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs78651539	chr8:1339720-1339721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs11136390	chr8:1339731-1339732	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs530544313	chr8:1339743-1339744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs80052750	chr8:1339765-1339766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs569564493	chr8:1339782-1339783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs117742371	chr8:1339798-1339799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs533197966	chr8:1339800-1339801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs76039784	chr8:1339806-1339807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs75021502	chr8:1339807-1339808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs527830407	chr8:1339809-1339810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs555024144	chr8:1339812-1339813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs12677155	chr8:1339829-1339830	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs184734896	chr8:1339844-1339845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs116889781	chr8:1339852-1339853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs577363212	chr8:1339863-1339864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs540027658	chr8:1339883-1339884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs553211313	chr8:1339906-1339907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs10866926	chr8:1339928-1339929	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs541398526	chr8:1339939-1339940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs561327433	chr8:1339942-1339943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575232708	chr8:1339963-1339964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs77164330	chr8:1339986-1339987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs564209282	chr8:1339987-1339988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs532940676	chr8:1339988-1339989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs187883330	chr8:1339996-1339997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs146981179	chr8:1339999-1340000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs565874330	chr8:1340013-1340014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs117918405	chr8:1340021-1340022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs55831993	chr8:1340023-1340024	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs568456100	chr8:1340024-1340025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537498551	chr8:1340049-1340050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529952052	chr8:1340050-1340051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550750887	chr8:1340095-1340096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570933996	chr8:1340121-1340122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539612116	chr8:1340133-1340134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs556309424	chr8:1340138-1340139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs568009503	chr8:1340149-1340150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs553174436	chr8:1340160-1340161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7012464	chr8:1340172-1340173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:119)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Cancer	18840272	CNVD
Pilocytic astrocytoma	18622384	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	20729466	CNVD
Ductal carcinoma	22052326	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Autism	20531469	CNVD
Breast cancer	20932292	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1338000-1340400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:1340400-1340600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:1340400-1340600	Enhancers	Stomach Smooth Muscle	stomach
4	chr8:1356000-1356800	ZNF genes & repeats	Esophagus	oesophagus
5	chr8:1356600-1357200	Enhancers	Brain Germinal Matrix	brain
6	chr8:1357000-1357600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:1357000-1357800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:1357000-1357800	Enhancers	Fetal Brain Male	brain
9	chr8:1357800-1359600	Weak transcription	Fetal Brain Male	brain
10	chr8:1359600-1360600	Enhancers	Fetal Brain Male	brain
11	chr8:1360400-1361200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr8:1360600-1361200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr8:1361800-1362600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:1362200-1362600	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links