Variant report
Variant | nsv1022419 |
---|---|
Chromosome Location | chr6:65708779-65760190 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:109)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CEBPB | chr6:65755702-65756077 | Hela-S3 | cervix: | n/a | chr6:65755859-65755870 chr6:65755888-65755899 |
2 | CEBPB | chr6:65757460-65757715 | HepG2 | liver: | n/a | chr6:65757602-65757613 |
3 | CEBPB | chr6:65755738-65756070 | IMR90 | lung: | n/a | chr6:65755859-65755870 chr6:65755888-65755899 |
4 | CEBPB | chr6:65755716-65756078 | HepG2 | liver: | n/a | chr6:65755859-65755870 chr6:65755888-65755899 |
5 | CEBPB | chr6:65714814-65714999 | A549 | lung: | n/a | chr6:65714880-65714891 |
6 | CEBPB | chr6:65716699-65717038 | H1-hESC | embryonic stem cell: | n/a | chr6:65716874-65716885 |
7 | CEBPB | chr6:65716700-65717039 | HepG2 | liver: | n/a | chr6:65716874-65716885 |
8 | CEBPB | chr6:65714828-65715032 | HepG2 | liver: | n/a | chr6:65714880-65714891 |
9 | CEBPB | chr6:65755724-65756051 | K562 | blood: | n/a | chr6:65755859-65755870 chr6:65755888-65755899 |
10 | CEBPB | chr6:65755777-65756072 | A549 | lung: | n/a | chr6:65755859-65755870 chr6:65755888-65755899 |
11 | CHD2 | chr6:65740417-65740502 | HepG2 | liver: | n/a | n/a |
12 | CTCF | chr6:65723500-65723650 | GM12872 | blood: | n/a | n/a |
13 | CTCF | chr6:65714320-65714470 | HEK293 | kidney: | n/a | n/a |
14 | CTCF | chr6:65723572-65723673 | MCF-7 | breast: | n/a | n/a |
15 | CTCF | chr6:65723480-65723630 | GM12866 | blood: | n/a | n/a |
16 | CTCF | chr6:65723523-65723653 | HepG2 | liver: | n/a | n/a |
17 | CTCF | chr6:65723463-65723778 | GM12878 | blood: | n/a | n/a |
18 | CTCF | chr6:65714280-65714430 | HBMEC | blood vessel: | n/a | n/a |
19 | CTCF | chr6:65723560-65723710 | GM12873 | blood: | n/a | n/a |
20 | CTCF | chr6:65723520-65723670 | BE2_C | brain: | n/a | n/a |
21 | CTCF | chr6:65723580-65723730 | K562 | blood: | n/a | n/a |
22 | CTCF | chr6:65723460-65723610 | GM12871 | blood: | n/a | n/a |
23 | CTCF | chr6:65714320-65714470 | HepG2 | liver: | n/a | n/a |
24 | CTCF | chr6:65723520-65723670 | GM12873 | blood: | n/a | n/a |
25 | CTCF | chr6:65733640-65733676 | Fibrobl | skin: | n/a | n/a |
26 | CTCF | chr6:65723520-65723670 | GM12878 | blood: | n/a | n/a |
27 | CTCF | chr6:65723620-65723648 | ProgFib | skin: | n/a | n/a |
28 | CTCF | chr6:65723540-65723690 | HEK293 | kidney: | n/a | n/a |
29 | CTCF | chr6:65731488-65731566 | Lung_OC | lung: | n/a | n/a |
30 | CTCF | chr6:65723540-65723690 | HepG2 | liver: | n/a | n/a |
31 | CTCF | chr6:65723560-65723710 | GM12868 | blood: | n/a | n/a |
32 | CTCF | chr6:65723460-65723610 | WERI-Rb-1 | eye: | n/a | n/a |
33 | CTCF | chr6:65723540-65723690 | NB4 | blood: | n/a | n/a |
34 | CTCF | chr6:65723598-65723621 | GM19238 | blood: | n/a | n/a |
35 | CTCF | chr6:65723540-65723690 | GM12868 | blood: | n/a | n/a |
36 | CTCF | chr6:65723547-65723666 | Gliobla | brain: | n/a | n/a |
37 | CTCF | chr6:65723540-65723690 | GM12874 | blood: | n/a | n/a |
38 | CTCF | chr6:65723520-65723670 | SK-N-SH_RA | brain: | n/a | n/a |
39 | CTCF | chr6:65723540-65723690 | GM12872 | blood: | n/a | n/a |
40 | CTCF | chr6:65723560-65723710 | GM12872 | blood: | n/a | n/a |
41 | CTCF | chr6:65736512-65736545 | GM13977 | blood: | n/a | n/a |
42 | CTCF | chr6:65723520-65723670 | HPAF | blood vessel: | n/a | n/a |
43 | CTCF | chr6:65731412-65731453 | GM13976 | blood: | n/a | n/a |
44 | CTCF | chr6:65723440-65723590 | HCPEpiC | choroid plexus: | n/a | n/a |
45 | CTCF | chr6:65723540-65723690 | GM12864 | blood: | n/a | n/a |
46 | CTCF | chr6:65723500-65723650 | HEK293 | kidney: | n/a | n/a |
47 | CTCF | chr6:65723540-65723690 | GM12865 | blood: | n/a | n/a |
48 | CTCF | chr6:65723582-65723667 | HUVEC | blood vessel: | n/a | n/a |
49 | CTCF | chr6:65723547-65723695 | MCF-7 | breast: | n/a | n/a |
50 | CTCF | chr6:65723565-65723648 | Hela-S3 | cervix: | n/a | n/a |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:62312608..62314638-chr6:65744579..65746564,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000256352 | TF binding region |
ENSG00000257058 | chromatin interactions |
ENSG00000124942 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs371747682 | chr6:65708822-65708823 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs115150021 | chr6:65708842-65708843 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs115849131 | chr6:65708849-65708850 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs555905773 | chr6:65708885-65708886 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs146950375 | chr6:65708894-65708895 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs147138931 | chr6:65708934-65708935 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs544882342 | chr6:65708938-65708939 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs558627614 | chr6:65708940-65708941 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs572397434 | chr6:65708944-65708945 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs541027967 | chr6:65709043-65709044 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs9354199 | chr6:65709059-65709060 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
12 | rs530191799 | chr6:65709065-65709066 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs137992522 | chr6:65709073-65709074 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs149454205 | chr6:65709088-65709089 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs532798862 | chr6:65709104-65709105 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs552824658 | chr6:65709114-65709115 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs566200684 | chr6:65709129-65709130 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs558671525 | chr6:65709166-65709167 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs528785064 | chr6:65709177-65709178 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs539309024 | chr6:65709199-65709200 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs35284552 | chr6:65709204-65709205 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
22 | rs551306263 | chr6:65709220-65709221 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
23 | rs567270045 | chr6:65709251-65709252 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
24 | rs531831943 | chr6:65709263-65709264 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
25 | rs535926766 | chr6:65709271-65709272 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
26 | rs555868943 | chr6:65709300-65709301 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
27 | rs569465867 | chr6:65709307-65709308 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
28 | rs189581657 | chr6:65709310-65709311 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
29 | rs181585488 | chr6:65709390-65709391 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
30 | rs555147871 | chr6:65709420-65709421 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs186699056 | chr6:65709428-65709429 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs143042577 | chr6:65709429-65709430 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs192012096 | chr6:65709441-65709442 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs554647242 | chr6:65709447-65709448 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs111346056 | chr6:65709461-65709462 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs9360105 | chr6:65709482-65709483 | Active TSS Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
37 | rs62416486 | chr6:65709496-65709497 | Active TSS Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
38 | rs368823835 | chr6:65709507-65709508 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs6908095 | chr6:65709514-65709515 | Active TSS Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
40 | rs532659942 | chr6:65709533-65709534 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs552525782 | chr6:65709540-65709541 | Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs546033484 | chr6:65709605-65709606 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
43 | rs559918358 | chr6:65709606-65709607 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
44 | rs7765697 | chr6:65709607-65709608 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
45 | rs181999533 | chr6:65709655-65709656 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
46 | rs7746249 | chr6:65709688-65709689 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
47 | rs371530851 | chr6:65709710-65709711 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
48 | rs529689620 | chr6:65709713-65709714 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
49 | rs148166192 | chr6:65709714-65709715 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
50 | rs563281956 | chr6:65709718-65709719 | Active TSS Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 21448237 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Autism | 22495311 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Gastric cancer | 17908304 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 17603634 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Systemic lupus erythematosus | 17503323 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Cancer | 21637783 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Colorectal cancer | 16272173 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Lung cancer | 18438408 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Ependymoma | 16718352 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 21364760 | CNVD |
Prostate cancer | 16573809 | CNVD |
Ovarian cancer | 19835627 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Cancer | 21183584 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Breast cancer | 16272173 | CNVD |
Developmental delay | 21147756 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Prostate cancer | 18632612 | CNVD |
Cancer | 20164919 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Epilepsy | 20502679 | CNVD |
Dyslexia | 22102821 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Schizophrenia | 23813976 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:65707000-65716000 | Weak transcription | Pancreas | Pancrea |
2 | chr6:65707600-65709400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
3 | chr6:65708400-65712000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
4 | chr6:65709200-65709800 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
5 | chr6:65709400-65709600 | Active TSS | iPS-15b Cell Line | embryonic stem cell |
6 | chr6:65709400-65709800 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
7 | chr6:65709600-65709800 | Flanking Active TSS | iPS-15b Cell Line | embryonic stem cell |
8 | chr6:65712000-65715000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
9 | chr6:65716000-65716200 | Enhancers | Pancreas | Pancrea |
10 | chr6:65716400-65716800 | Enhancers | HUES64 Cell Line | embryonic stem cell |
11 | chr6:65716400-65717000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
12 | chr6:65716600-65717000 | Enhancers | HUES6 Cell Line | embryonic stem cell |
13 | chr6:65716600-65717000 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
14 | chr6:65730400-65731000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
15 | chr6:65731000-65740200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
16 | chr6:65738800-65743200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
17 | chr6:65739800-65740200 | Enhancers | Pancreas | Pancrea |
18 | chr6:65740200-65740400 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
19 | chr6:65740200-65740600 | ZNF genes & repeats | Pancreas | Pancrea |
20 | chr6:65743200-65743400 | Active TSS | H1 Derived Mesenchymal Stem Cells | ES cell derived |