Variant report
Variant | nsv1022618 |
---|---|
Chromosome Location | chr6:86465365-87432069 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2472)
- CpG islands (count:489)
- Chromatin interactive region (count:65)
- LncRNA region (count:7)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr6:86965769-86966016 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr6:87392792-87393956 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr6:86466649-86467010 | K562 | blood: | n/a | n/a |
4 | ARID3A | chr6:87394843-87395342 | K562 | blood: | n/a | n/a |
5 | ARID3A | chr6:86466750-86467021 | HepG2 | liver: | n/a | n/a |
6 | ARID3A | chr6:86632675-86632979 | HepG2 | liver: | n/a | n/a |
7 | ATF1 | chr6:87394954-87395205 | K562 | blood: | n/a | n/a |
8 | ATF1 | chr6:86919119-86919208 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr6:87392891-87393627 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr6:87410117-87410320 | K562 | blood: | n/a | n/a |
11 | ATF3 | chr6:86901866-86902226 | H1-hESC | embryonic stem cell: | n/a | n/a |
12 | ATF3 | chr6:86901939-86902219 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | BACH1 | chr6:86576041-86576233 | H1-hESC | embryonic stem cell: | n/a | n/a |
14 | BACH1 | chr6:86901914-86902069 | H1-hESC | embryonic stem cell: | n/a | n/a |
15 | BACH1 | chr6:86898846-86898863 | H1-hESC | embryonic stem cell: | n/a | n/a |
16 | BACH1 | chr6:87347416-87347417 | K562 | blood: | n/a | n/a |
17 | BACH1 | chr6:87187567-87187831 | H1-hESC | embryonic stem cell: | n/a | n/a |
18 | BACH1 | chr6:86578018-86578101 | K562 | blood: | n/a | n/a |
19 | BCL11A | chr6:87198812-87199065 | H1-hESC | embryonic stem cell: | n/a | n/a |
20 | BDP1 | chr6:86552462-86552680 | Hela-S3 | cervix: | n/a | n/a |
21 | BHLHE40 | chr6:86901978-86902056 | GM12878 | blood: | n/a | n/a |
22 | BHLHE40 | chr6:87225876-87226119 | GM12878 | blood: | n/a | chr6:87225988-87226001 chr6:87225984-87226005 chr6:87225990-87225999 chr6:87225989-87225998 chr6:87225990-87225999 chr6:87225991-87226000 |
23 | BHLHE40 | chr6:87394959-87395310 | K562 | blood: | n/a | n/a |
24 | BHLHE40 | chr6:87392836-87393518 | K562 | blood: | n/a | n/a |
25 | BHLHE40 | chr6:86700819-86701140 | GM12878 | blood: | n/a | n/a |
26 | BHLHE40 | chr6:86685736-86685780 | GM12878 | blood: | n/a | n/a |
27 | BRCA1 | chr6:86779162-86779163 | HepG2 | liver: | n/a | n/a |
28 | BRCA1 | chr6:87368528-87368609 | Hela-S3 | cervix: | n/a | n/a |
29 | BRF1 | chr6:86552462-86552681 | Hela-S3 | cervix: | n/a | n/a |
30 | CBX3 | chr6:87382089-87382437 | K562 | blood: | n/a | n/a |
31 | CBX3 | chr6:86538698-86539019 | K562 | blood: | n/a | n/a |
32 | CBX3 | chr6:87302409-87302725 | K562 | blood: | n/a | n/a |
33 | CBX3 | chr6:87382079-87382469 | K562 | blood: | n/a | n/a |
34 | CBX3 | chr6:86538752-86539012 | K562 | blood: | n/a | n/a |
35 | CBX3 | chr6:87392924-87393577 | K562 | blood: | n/a | n/a |
36 | CBX3 | chr6:87392934-87393686 | K562 | blood: | n/a | n/a |
37 | CCNT2 | chr6:87392719-87393684 | K562 | blood: | n/a | n/a |
38 | CCNT2 | chr6:87242777-87242902 | K562 | blood: | n/a | n/a |
39 | CCNT2 | chr6:86922703-86922903 | K562 | blood: | n/a | n/a |
40 | CEBPB | chr6:87425344-87425752 | ECC-1 | luminal epithelium: | n/a | n/a |
41 | CEBPB | chr6:87173887-87173910 | K562 | blood: | n/a | chr6:87173895-87173906 chr6:87173894-87173907 |
42 | CEBPB | chr6:87431910-87432114 | A549 | lung: | n/a | n/a |
43 | CEBPB | chr6:87209815-87210240 | MCF-7 | breast: | n/a | chr6:87210019-87210030 |
44 | CEBPB | chr6:87244691-87244981 | K562 | blood: | n/a | chr6:87244814-87244825 |
45 | CEBPB | chr6:87245887-87246207 | IMR90 | lung: | n/a | chr6:87246039-87246050 |
46 | CEBPB | chr6:87296212-87296438 | K562 | blood: | n/a | chr6:87296422-87296433 chr6:87296299-87296310 chr6:87296301-87296310 |
47 | CEBPB | chr6:87295698-87295900 | HepG2 | liver: | n/a | chr6:87295821-87295832 chr6:87295821-87295834 chr6:87295821-87295834 chr6:87295823-87295834 |
48 | CEBPB | chr6:87245888-87246198 | K562 | blood: | n/a | chr6:87246039-87246050 |
49 | CEBPB | chr6:87425232-87425884 | MCF-7 | breast: | n/a | n/a |
50 | CEBPB | chr6:86646714-86646969 | Hela-S3 | cervix: | n/a | chr6:86646818-86646827 chr6:86646817-86646828 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:87041914-87041964 | SK-N-SH | brain: | n/a |
2 | chr6:87041914-87041964 | SK-N-SH | brain: | n/a |
3 | chr6:87380615-87380665 | RPTEC | kidney: | n/a |
4 | chr6:86548232-86548282 | SK-N-SH_RA | brain: | n/a |
5 | chr6:86548232-86548282 | HIPEpiC | eye: | n/a |
6 | chr6:87041914-87041964 | HIPEpiC | eye: | n/a |
7 | chr6:87380615-87380665 | PrEC | prostate: | n/a |
8 | chr6:87041914-87041964 | A549 | lung: | n/a |
9 | chr6:86862059-86862109 | HCM | heart: | n/a |
10 | chr6:87222174-87222224 | U87 | brain: | n/a |
11 | chr6:86547801-86547851 | AG09319 | gingival: | n/a |
12 | chr6:87196595-87196645 | U87 | brain: | n/a |
13 | chr6:86862059-86862109 | AG10803 | skin: | n/a |
14 | chr6:86547801-86547851 | AoSMC | blood vessel: | n/a |
15 | chr6:87380615-87380665 | ECC-1 | luminal epithelium: | n/a |
16 | chr6:86548232-86548282 | HAEpiC | amniotic membrane: | n/a |
17 | chr6:87196595-87196645 | HL-60 | blood: | n/a |
18 | chr6:87196595-87196645 | HAEpiC | amniotic membrane: | n/a |
19 | chr6:86547801-86547851 | AG09309 | skin: | n/a |
20 | chr6:86862059-86862109 | PANC-1 | pancreas: | n/a |
21 | chr6:86862059-86862109 | HIPEpiC | eye: | n/a |
22 | chr6:86547801-86547851 | ECC-1 | luminal epithelium: | n/a |
23 | chr6:86548232-86548282 | HPAEpiC | pulmonary alveolar: | n/a |
24 | chr6:87222174-87222224 | T-47D | breast: | n/a |
25 | chr6:87196595-87196645 | Hepatocyte | liver: | n/a |
26 | chr6:86547801-86547851 | HRPEpiC | eye: | n/a |
27 | chr6:86548232-86548282 | U87 | brain: | n/a |
28 | chr6:87041914-87041964 | AG09319 | gingival: | n/a |
29 | chr6:87380671-87380721 | RPTEC | kidney: | n/a |
30 | chr6:87041914-87041964 | SK-N-MC | brain: | n/a |
31 | chr6:87380615-87380665 | GM12892 | blood: | n/a |
32 | chr6:87196595-87196645 | HEEpiC | esophagus: | n/a |
33 | chr6:87380671-87380721 | HRE | kidney: | n/a |
34 | chr6:86862059-86862109 | BE2_C | brain: | n/a |
35 | chr6:87222174-87222224 | HCPEpiC | choroid plexus: | n/a |
36 | chr6:86548232-86548282 | AG04450 | lung: | fetal |
37 | chr6:87380615-87380665 | NT2-D1 | testis: | n/a |
38 | chr6:87041914-87041964 | RPTEC | kidney: | n/a |
39 | chr6:87222174-87222224 | ECC-1 | luminal epithelium: | n/a |
40 | chr6:86548232-86548282 | AG04449 | skin: | fetal |
41 | chr6:87196595-87196645 | HIPEpiC | eye: | n/a |
42 | chr6:87222174-87222224 | BJ | skin: | n/a |
43 | chr6:87041914-87041964 | SK-N-SH_RA | brain: | n/a |
44 | chr6:87041914-87041964 | HPAEpiC | pulmonary alveolar: | n/a |
45 | chr6:87380615-87380665 | Hela-S3 | cervix: | n/a |
46 | chr6:87380615-87380665 | HCF | heart: | n/a |
47 | chr6:86548232-86548282 | T-47D | breast: | n/a |
48 | chr6:86548232-86548282 | AG09309 | skin: | n/a |
49 | chr6:86862059-86862109 | T-47D | breast: | n/a |
50 | chr6:87380615-87380665 | SK-N-MC | brain: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:86679171..86681936-chr6:86686395..86689125,2 | K562 | blood: | |
2 | chr6:86632367..86633291-chr6:86884579..86885474,2 | MCF-7 | breast: | |
3 | chr6:86722649..86724742-chr6:86768609..86770800,2 | MCF-7 | breast: | |
4 | chr6:86463941..86466706-chr6:87565460..87567312,2 | MCF-7 | breast: | |
5 | chr6:87317696..87319542-chr6:87392510..87394797,2 | K562 | blood: | |
6 | chr2:199112345..199112956-chr6:87088425..87089218,2 | MCF-7 | breast: | |
7 | chr6:86632253..86632927-chr6:87646756..87647373,2 | K562 | blood: | |
8 | chr6:87423786..87425445-chr6:87431347..87433792,2 | MCF-7 | breast: | |
9 | chr6:86741107..86743196-chr6:86766246..86768757,2 | MCF-7 | breast: | |
10 | chr6:87314634..87318988-chr6:87322106..87325054,3 | K562 | blood: | |
11 | chr6:87317696..87319542-chr6:87392510..87394797,2 | K562 | blood: | |
12 | chr6:86352318..86354176-chr6:87391935..87394056,2 | K562 | blood: | |
13 | chr6:87137565..87139106-chr6:87140631..87142698,2 | K562 | blood: | |
14 | chr6:86632071..86633265-chr6:86884594..86886454,5 | MCF-7 | breast: | |
15 | chr6:87059757..87062290-chr6:87067357..87069140,2 | K562 | blood: | |
16 | chr6:86389006..86390560-chr6:86474592..86476523,2 | K562 | blood: | |
17 | chr6:87045137..87047941-chr6:87049643..87052368,2 | K562 | blood: | |
18 | chr6:86350073..86353077-chr6:86464784..86467330,3 | MCF-7 | breast: | |
19 | chr6:87225517..87227389-chr6:87237269..87238777,2 | K562 | blood: | |
20 | chr6:87137847..87140371-chr6:87144269..87146494,2 | K562 | blood: | |
21 | chr6:87343553..87345245-chr6:87346173..87348745,2 | K562 | blood: | |
22 | chr6:87121819..87123929-chr6:87125096..87127462,2 | MCF-7 | breast: | |
23 | chr6:87321780..87323458-chr6:87325338..87327123,2 | K562 | blood: | |
24 | chr6:86351778..86354255-chr6:86511973..86513723,2 | MCF-7 | breast: | |
25 | chr6:87423786..87425445-chr6:87431347..87433792,2 | MCF-7 | breast: | |
26 | chr6:86386226..86389765-chr6:86463703..86468308,5 | MCF-7 | breast: | |
27 | chr6:86632071..86633265-chr6:86884594..86886454,5 | MCF-7 | breast: | |
28 | chr6:87313812..87315954-chr6:87317958..87322098,3 | K562 | blood: | |
29 | chr6:86741107..86743196-chr6:86766246..86768757,2 | MCF-7 | breast: | |
30 | chr6:87322046..87324306-chr6:87330179..87333097,2 | K562 | blood: | |
31 | chr6:86501351..86504380-chr6:86507013..86510023,3 | K562 | blood: | |
32 | chr6:87424582..87427120-chr6:87432105..87434756,2 | MCF-7 | breast: | |
33 | chr6:86466808..86467382-chr6:87646548..87647385,2 | K562 | blood: | |
34 | chr6:87300183..87302534-chr6:87323211..87326101,2 | K562 | blood: | |
35 | chr6:86897792..86900051-chr6:86901438..86903650,2 | K562 | blood: | |
36 | chr6:86387031..86390064-chr6:86464060..86466977,4 | MCF-7 | breast: | |
37 | chr6:87225517..87227389-chr6:87237269..87238777,2 | K562 | blood: | |
38 | chr6:86679171..86681936-chr6:86686395..86689125,2 | K562 | blood: | |
39 | chr6:86386556..86388965-chr6:87417224..87418892,2 | MCF-7 | breast: | |
40 | chr10:3371371..3371930-chr6:86798182..86798788,2 | MCF-7 | breast: | |
41 | chr6:87059757..87062290-chr6:87067357..87069140,2 | K562 | blood: | |
42 | chr6:86657984..86660030-chr6:86660418..86662554,2 | MCF-7 | breast: | |
43 | chr6:87313812..87315954-chr6:87317958..87322098,3 | K562 | blood: | |
44 | chr6:87045137..87047941-chr6:87049643..87052368,2 | K562 | blood: | |
45 | chr6:87321780..87323458-chr6:87325338..87327123,2 | K562 | blood: | |
46 | chr6:87322046..87324306-chr6:87330179..87333097,2 | K562 | blood: | |
47 | chr6:86722649..86724742-chr6:86768609..86770800,2 | MCF-7 | breast: | |
48 | chr6:86534169..86534685-chr6:86574198..86574815,2 | MCF-7 | breast: | |
49 | chr6:86597171..86598674-chr6:86601290..86603346,2 | K562 | blood: | |
50 | chr6:87300183..87302534-chr6:87323211..87326101,2 | K562 | blood: |
(count:7 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-NT5E-8 | chr6:86578671-86579182 | NONHSAT113874 |
2 | lnc-NT5E-7 | chr6:86565538-86565836 | NONHSAT113873 |
3 | lnc-HTR1E-3 | chr6:87145570-87145854 | NONHSAT113881 |
4 | lnc-FAM165A-2 | chr6:86482026-86482088 | NONHSAT113871 |
5 | lnc-NT5E-7 | chr6:86571835-86571903 | NONHSAT113873 |
6 | lnc-HTR1E-4 | chr6:87141962-87142387 | NONHSAT113880 |
7 | lnc-FAM165A-3 | chr6:86880165-86880736 | NONHSAT113876 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000217272 | TF binding region |
ENSG00000200427 | TF binding region |
ENSG00000221101 | TF binding region |
NDUFA5P9 | TF binding region |
RPL7P27 | TF binding region |
ENSG00000219500 | TF binding region |
ENSG00000218766 | TF binding region |
RNU4-12P | TF binding region |
RN7SL643P | TF binding region |
ENSG00000217272 | CpG island |
ENSG00000200427 | CpG island |
ENSG00000221101 | CpG island |
NDUFA5P9 | CpG island |
RPL7P27 | CpG island |
ENSG00000219500 | CpG island |
ENSG00000218766 | CpG island |
RNU4-12P | CpG island |
RN7SL643P | CpG island |
ENSG00000243124 | chromatin interactions |
ENSG00000135316 | chromatin interactions |
ENSG00000219500 | chromatin interactions |
ENSG00000203875 | chromatin interactions |
ENSG00000168830 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs556151000 | chr6:86465365-86465366 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
2 | rs551813222 | chr6:86465370-86465371 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
3 | rs186307437 | chr6:86465385-86465386 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
4 | rs538704062 | chr6:86465403-86465404 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
5 | rs368881323 | chr6:86465435-86465436 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
6 | rs73487447 | chr6:86465441-86465442 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
7 | rs368151759 | chr6:86465447-86465448 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
8 | rs149916419 | chr6:86465478-86465479 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
9 | rs543255356 | chr6:86465528-86465529 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
10 | rs189957806 | chr6:86465551-86465552 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
11 | rs75717544 | chr6:86465553-86465554 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
12 | rs543433455 | chr6:86465626-86465627 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
13 | rs565246778 | chr6:86465662-86465663 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
14 | rs532390985 | chr6:86465701-86465702 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
15 | rs547436444 | chr6:86465702-86465703 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
16 | rs146450656 | chr6:86465752-86465753 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
17 | rs527473915 | chr6:86465756-86465757 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
18 | rs548098496 | chr6:86465759-86465760 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
19 | rs568327261 | chr6:86465782-86465783 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
20 | rs181353334 | chr6:86465814-86465815 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
21 | rs200764100 | chr6:86465827-86465828 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
22 | rs140810685 | chr6:86465840-86465841 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
23 | rs570896045 | chr6:86465847-86465848 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
24 | rs144563655 | chr6:86465877-86465878 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
25 | rs569248091 | chr6:86465892-86465893 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
26 | rs539846616 | chr6:86465940-86465941 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
27 | rs34014430 | chr6:86465986-86465987 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
28 | rs139024962 | chr6:86465992-86465993 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
29 | rs186839171 | chr6:86466032-86466033 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
30 | rs116353236 | chr6:86466049-86466050 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
31 | rs548288944 | chr6:86466050-86466051 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
32 | rs34678410 | chr6:86466107-86466108 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
33 | rs374581838 | chr6:86466122-86466123 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
34 | rs9450320 | chr6:86466139-86466140 | Inactive region | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
35 | rs112497482 | chr6:86466167-86466168 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
36 | rs190679331 | chr6:86466168-86466169 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
37 | rs544064108 | chr6:86466183-86466184 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
38 | rs576629532 | chr6:86466220-86466221 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
39 | rs565440986 | chr6:86466254-86466255 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
40 | rs576783506 | chr6:86466292-86466293 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
41 | rs7758708 | chr6:86466331-86466332 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
42 | rs181911567 | chr6:86466343-86466344 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
43 | rs530161729 | chr6:86466394-86466395 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
44 | rs542441682 | chr6:86466404-86466405 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
45 | rs542396315 | chr6:86466498-86466499 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
46 | rs561103658 | chr6:86466550-86466551 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
47 | rs186560320 | chr6:86466568-86466569 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
48 | rs555712767 | chr6:86466681-86466682 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
49 | rs1335442 | chr6:86466692-86466693 | Inactive region | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
50 | rs571575058 | chr6:86466743-86466744 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 21448237 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Autism | 22495311 | CNVD |
Gastric cancer | 17908304 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 17603634 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Systemic lupus erythematosus | 17503323 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Ependymoma | 16718352 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Prostate cancer | 16573809 | CNVD |
Breast cancer | 16272173 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Prostate cancer | 18632612 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Wilms tumour | 21544195 | CNVD |
Follicular lymphoma | 17699855 | CNVD |
Breast cancer | 17133270 | CNVD |
Leukemia | 18688285 | CNVD |
Prostate cancer | 19242612 | CNVD |
Glioma | 21046410 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Zellweger syndrome | 21572526 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Malignant melanoma | 18718029 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Prostate cancer | 16461572 | CNVD |
Mental retardation | 21045960 | CNVD |
Obesity | 21045960 | CNVD |
learning difficulties | 21045960 | CNVD |
Prostate cancer | 17245344 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Cancer | 20164920 | CNVD |
Burkitt''s lymphoma | 20823134 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 18458336 | CNVD |
Acute lymphoblastic leukemia | 17640729 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Chondromyxoid Fibroma | 20696777 | CNVD |
Cancer | 21183584 | CNVD |
craniofacial dysmorphism | 21918468 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
abnormal development | 18461090 | CNVD |
Myelodysplastic syndrome | 18508791 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Breast cancer | 21364760 | CNVD |
Breast cancer | 22522925 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Glioma | 20126413 | CNVD |
Schizophrenia | 23813976 | CNVD |
Developmental delay | 19490664 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:86464800-86465600 | Enhancers | Fetal Lung | lung |
2 | chr6:86473800-86475600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
3 | chr6:86474000-86475200 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
4 | chr6:86474200-86475800 | Enhancers | Ovary | ovary |
5 | chr6:86474400-86475600 | Enhancers | Adipose Nuclei | Adipose |
6 | chr6:86474600-86475200 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
7 | chr6:86474600-86475200 | Enhancers | Aorta | Aorta |
8 | chr6:86474600-86475200 | Enhancers | HepG2 | liver |
9 | chr6:86474800-86475200 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
10 | chr6:86475200-86478200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
11 | chr6:86475200-86485600 | Weak transcription | Aorta | Aorta |
12 | chr6:86481400-86481600 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
13 | chr6:86481400-86482200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
14 | chr6:86481400-86482200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
15 | chr6:86481400-86482400 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
16 | chr6:86481600-86481800 | Flanking Active TSS | iPS-20b Cell Line | embryonic stem cell |
17 | chr6:86481600-86482200 | Enhancers | H1 Cell Line | embryonic stem cell |
18 | chr6:86481600-86482200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
19 | chr6:86481600-86482200 | Enhancers | HUES6 Cell Line | embryonic stem cell |
20 | chr6:86481600-86482600 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
21 | chr6:86481800-86482000 | Active TSS | iPS-20b Cell Line | embryonic stem cell |
22 | chr6:86481800-86482200 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
23 | chr6:86481800-86482400 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
24 | chr6:86481800-86482600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
25 | chr6:86482200-86482600 | Bivalent Enhancer | H1 Derived Mesenchymal Stem Cells | ES cell derived |
26 | chr6:86482600-86482800 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
27 | chr6:86485600-86486400 | Enhancers | Aorta | Aorta |
28 | chr6:86505400-86505600 | Enhancers | Psoas Muscle | Psoas |
29 | chr6:86505600-86506200 | Enhancers | Brain Germinal Matrix | brain |
30 | chr6:86505600-86512000 | Weak transcription | Psoas Muscle | Psoas |
31 | chr6:86507800-86508000 | Enhancers | Brain Germinal Matrix | brain |
32 | chr6:86507800-86508400 | Enhancers | Esophagus | oesophagus |
33 | chr6:86508000-86509400 | Enhancers | Fetal Lung | lung |
34 | chr6:86508200-86508600 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
35 | chr6:86508400-86509200 | Enhancers | Adipose Nuclei | Adipose |
36 | chr6:86512000-86512200 | Enhancers | Psoas Muscle | Psoas |
37 | chr6:86513400-86513800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
38 | chr6:86517000-86517600 | Weak transcription | Aorta | Aorta |
39 | chr6:86518000-86518200 | ZNF genes & repeats | Aorta | Aorta |
40 | chr6:86525600-86526000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
41 | chr6:86534400-86534800 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
42 | chr6:86537600-86537800 | ZNF genes & repeats | Ovary | ovary |
43 | chr6:86537800-86550000 | Weak transcription | Ovary | ovary |
44 | chr6:86546800-86556800 | Weak transcription | Right Atrium | heart |
45 | chr6:86550000-86550400 | ZNF genes & repeats | Ovary | ovary |
46 | chr6:86551400-86552800 | Enhancers | Dnd41 | blood |
47 | chr6:86552400-86552600 | ZNF genes & repeats | ES-I3 Cell Line | embryonic stem cell |
48 | chr6:86552400-86552600 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
49 | chr6:86552400-86552600 | ZNF genes & repeats | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
50 | chr6:86552400-86552600 | ZNF genes & repeats | H9 Derived Neuron Cultured Cells | ES cell derived |