Variant report

Variant	nsv1022741
Chromosome Location	chr9:9869171-9899302
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1414 )
Associated
traits (count: 114 )

Variant overlapped rSNPs/rCNVs (count:1414 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111229928	chr9:9873408-9873409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs190562359	chr9:9873441-9873442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs192676833	chr9:9873461-9873462	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs114240817	chr9:9873476-9873477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs184475400	chr9:9873497-9873498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs188380625	chr9:9873508-9873509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs10116184	chr9:9873525-9873526	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs532391426	chr9:9873536-9873537	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs546082618	chr9:9873554-9873555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs562776437	chr9:9873583-9873584	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs535610259	chr9:9873588-9873589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs181148752	chr9:9873613-9873614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs568388426	chr9:9873631-9873632	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs184216536	chr9:9873649-9873650	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs36118819	chr9:9873652-9873653	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs545999446	chr9:9873656-9873657	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs368220015	chr9:9873659-9873660	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs188891444	chr9:9873682-9873683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs570670567	chr9:9873683-9873684	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs555287019	chr9:9873703-9873704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs181756042	chr9:9873744-9873745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs556410542	chr9:9873755-9873756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs187356579	chr9:9873764-9873765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs535780941	chr9:9873766-9873767	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs572239050	chr9:9873786-9873787	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs28574708	chr9:9873800-9873801	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs192072192	chr9:9873808-9873809	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs540314173	chr9:9873811-9873812	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs554352613	chr9:9873824-9873825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs553598236	chr9:9873825-9873826	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs375479643	chr9:9873833-9873834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs577069041	chr9:9873835-9873836	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs546044264	chr9:9873850-9873851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs562740512	chr9:9873854-9873855	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs577298275	chr9:9873881-9873882	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs114006550	chr9:9873919-9873920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs546225470	chr9:9873920-9873921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs115812988	chr9:9873923-9873924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs372363678	chr9:9873986-9873987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs180807261	chr9:9874050-9874051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs576682060	chr9:9874063-9874064	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs542547315	chr9:9874089-9874090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs547821815	chr9:9874090-9874091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs570633171	chr9:9874124-9874125	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs533314648	chr9:9874137-9874138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs549945833	chr9:9874153-9874154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs150846125	chr9:9874163-9874164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs75287863	chr9:9874186-9874187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs555827411	chr9:9874203-9874204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs7031251	chr9:9874215-9874216	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:114)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung adenocarcinoma	17982442	CNVD
Breast cancer	21611746	CNVD
Schizophrenia	23813976	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9873400-9874600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:9874000-9874800	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:9874200-9874600	Enhancers	Dnd41	blood
4	chr9:9874200-9874800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:9874600-9879200	Weak transcription	Dnd41	blood
6	chr9:9877600-9878400	Enhancers	Placenta	Placenta
7	chr9:9878400-9880000	Weak transcription	Placenta	Placenta
8	chr9:9879200-9880200	Enhancers	Dnd41	blood
9	chr9:9879600-9880000	Enhancers	Primary T cells from cord blood	blood
10	chr9:9879600-9880200	Enhancers	Fetal Thymus	thymus
11	chr9:9879600-9880200	Enhancers	Thymus	Thymus
12	chr9:9880000-9880400	Enhancers	Placenta	Placenta
13	chr9:9880400-9881600	Weak transcription	Placenta	Placenta
14	chr9:9881400-9882000	Enhancers	HMEC	breast
15	chr9:9881600-9881800	Enhancers	Placenta	Placenta
16	chr9:9884400-9908200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:9888200-9888800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr9:9888200-9888800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:9888400-9888800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:9889600-9890000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:9893800-9894400	Enhancers	HMEC	breast
22	chr9:9894000-9894400	Enhancers	Placenta	Placenta
23	chr9:9895000-9897000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr9:9895200-9895400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr9:9895200-9896000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:9895400-9903800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:9895600-9895800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr9:9896000-9897000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr9:9896000-9897000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr9:9897000-9897200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr9:9897000-9897400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr9:9897200-9904000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links