Variant report

Variant	nsv1022804
Chromosome Location	chr6:162346282-162562498
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
2	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
3	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
4	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
5	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
6	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
7	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
8	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
9	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
10	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
11	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
12	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
13	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
14	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
15	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
16	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
17	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
18	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
19	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
20	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
21	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
22	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
23	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
24	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:
25	chr3:66689243..66689865-chr6:162514238..162514739,2	MCF-7	breast:
26	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:

No data

Extended variants
information (count: 6909 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:6909 , 50 per page) page: 1 2 3 4 5 6 7 ... 139

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6940129	chr6:162346282-162346283	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs553585700	chr6:162346291-162346292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs74458729	chr6:162346331-162346332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12526904	chr6:162346378-162346379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs551792505	chr6:162346402-162346403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs368169852	chr6:162346408-162346409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575088145	chr6:162346423-162346424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs186417648	chr6:162346431-162346432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs560622302	chr6:162346439-162346440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs146190702	chr6:162346444-162346445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs192209434	chr6:162346458-162346459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs559896583	chr6:162346474-162346475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs532385849	chr6:162346475-162346476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs552181370	chr6:162346476-162346477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562812024	chr6:162346527-162346528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs139075139	chr6:162346528-162346529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs528080608	chr6:162346540-162346541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs541015458	chr6:162346558-162346559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs546662626	chr6:162346574-162346575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs553383378	chr6:162346582-162346583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs536720442	chr6:162346584-162346585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs182674266	chr6:162346729-162346730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs566943055	chr6:162346815-162346816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs144049975	chr6:162346890-162346891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs558939122	chr6:162346948-162346949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs6901122	chr6:162346956-162346957	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs537408684	chr6:162346969-162346970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs375861371	chr6:162347072-162347073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187945058	chr6:162347081-162347082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192178255	chr6:162347126-162347127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs79750448	chr6:162347136-162347137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs553493315	chr6:162347149-162347150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs73024553	chr6:162347188-162347189	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs2022995	chr6:162347191-162347192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs150949762	chr6:162347204-162347205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs562605653	chr6:162347213-162347214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs371539548	chr6:162347219-162347220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs542170904	chr6:162347224-162347225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs561263032	chr6:162347294-162347295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs530157389	chr6:162347306-162347307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547074773	chr6:162347311-162347312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566958908	chr6:162347313-162347314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532570687	chr6:162347324-162347325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs372270254	chr6:162347341-162347342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs543213206	chr6:162347363-162347364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs2022994	chr6:162347365-162347366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs561361960	chr6:162347375-162347376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569386075	chr6:162347408-162347409	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs374469038	chr6:162347415-162347416	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs141045419	chr6:162347417-162347418	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	23813976	CNVD
early-passage human iPS cells	21368824	CNVD
Parkinson disease	21829596	CNVD
Gastric cancer	22315472	CNVD

Chromatin state (count:498 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162336200-162357200	Weak transcription	Aorta	Aorta
2	chr6:162340200-162352000	Weak transcription	Ovary	ovary
3	chr6:162344200-162347400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:162347400-162347800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:162347400-162348000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:162354200-162372200	Weak transcription	Right Atrium	heart
7	chr6:162357200-162357400	ZNF genes & repeats	Aorta	Aorta
8	chr6:162357400-162362200	Weak transcription	Aorta	Aorta
9	chr6:162361800-162362400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:162361800-162362400	Enhancers	Pancreas	Pancrea
11	chr6:162362200-162362800	Enhancers	Fetal Intestine Large	intestine
12	chr6:162364600-162364800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:162364600-162364800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:162364800-162365400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:162364800-162365600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:162364800-162366200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:162364800-162377000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:162365400-162365600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:162365400-162365600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:162365400-162365800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:162365400-162366600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:162365400-162366800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:162365400-162368600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:162365600-162366600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:162365600-162367600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:162365600-162367800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:162365800-162366000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:162365800-162366200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:162365800-162367000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:162365800-162367200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:162366000-162370000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:162366200-162366400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:162366200-162368400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:162366400-162368800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:162366600-162366800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:162366600-162367600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:162366800-162367600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:162366800-162367800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:162367000-162367400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:162367200-162368200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:162367400-162367800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:162367400-162368000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:162367400-162368000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:162367400-162368000	Enhancers	Fetal Brain Male	brain
45	chr6:162367600-162367800	Enhancers	H1 Cell Line	embryonic stem cell
46	chr6:162367600-162367800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr6:162367600-162368600	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr6:162367800-162368400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr6:162367800-162368600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:162367800-162368800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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