Variant report

Variant	nsv1022817
Chromosome Location	chr5:61853619-62149259
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2085)
CpG islands
(count:795)
Chromatin interactive
region (count:72)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:2085 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:61948019-61948444	HepG2	liver:	n/a	n/a
2	ARID3A	chr5:61884567-61884909	HepG2	liver:	n/a	n/a
3	ARID3A	chr5:62037767-62038406	HepG2	liver:	n/a	n/a
4	ARID3A	chr5:61881564-61882083	K562	blood:	n/a	n/a
5	ARID3A	chr5:61896465-61897039	HepG2	liver:	n/a	n/a
6	ARID3A	chr5:61976936-61977433	HepG2	liver:	n/a	n/a
7	ARID3A	chr5:61953771-61953952	HepG2	liver:	n/a	n/a
8	ARID3A	chr5:61889247-61889447	K562	blood:	n/a	n/a
9	ATF1	chr5:61881568-61881851	K562	blood:	n/a	n/a
10	ATF1	chr5:62004400-62004644	K562	blood:	n/a	n/a
11	ATF2	chr5:61870304-61870858	GM12878	blood:	n/a	n/a
12	ATF3	chr5:62015871-62016064	K562	blood:	n/a	n/a
13	BACH1	chr5:61889249-61889500	K562	blood:	n/a	chr5:61889372-61889386
14	BACH1	chr5:61986215-61986345	K562	blood:	n/a	n/a
15	BACH1	chr5:61865990-61866018	K562	blood:	n/a	n/a
16	BACH1	chr5:61917202-61917344	K562	blood:	n/a	n/a
17	BATF	chr5:61865376-61865608	GM12878	blood:	n/a	chr5:61865577-61865585
18	BATF	chr5:61870477-61870741	GM12878	blood:	n/a	n/a
19	BATF	chr5:61870405-61870771	GM12878	blood:	n/a	n/a
20	BCL3	chr5:62056284-62056836	GM12878	blood:	n/a	n/a
21	BCL3	chr5:61890237-61890608	GM12878	blood:	n/a	n/a
22	BCL3	chr5:62073699-62074050	GM12878	blood:	n/a	n/a
23	BCLAF1	chr5:61870371-61870825	GM12878	blood:	n/a	n/a
24	BHLHE40	chr5:61884632-61884843	HepG2	liver:	n/a	n/a
25	BHLHE40	chr5:61917176-61917369	K562	blood:	n/a	n/a
26	BHLHE40	chr5:62072439-62072720	K562	blood:	n/a	n/a
27	BHLHE40	chr5:61927952-61927976	K562	blood:	n/a	n/a
28	BHLHE40	chr5:62015797-62016298	GM12878	blood:	n/a	n/a
29	BHLHE40	chr5:61889303-61889559	K562	blood:	n/a	n/a
30	BHLHE40	chr5:61945436-61945510	K562	blood:	n/a	n/a
31	BHLHE40	chr5:61872555-61872604	K562	blood:	n/a	n/a
32	BHLHE40	chr5:62015848-62016138	HepG2	liver:	n/a	n/a
33	BHLHE40	chr5:61884498-61884971	HepG2	liver:	n/a	n/a
34	BHLHE40	chr5:61888807-61888814	K562	blood:	n/a	n/a
35	BHLHE40	chr5:62058497-62058551	GM12878	blood:	n/a	n/a
36	BHLHE40	chr5:62015830-62016143	K562	blood:	n/a	n/a
37	BRCA1	chr5:61968131-61968149	GM12878	blood:	n/a	n/a
38	CBX3	chr5:61863983-61864320	K562	blood:	n/a	n/a
39	CBX3	chr5:62004057-62004283	K562	blood:	n/a	n/a
40	CBX3	chr5:61863976-61864361	K562	blood:	n/a	n/a
41	CBX3	chr5:61917097-61917474	K562	blood:	n/a	n/a
42	CCNT2	chr5:61889264-61889497	K562	blood:	n/a	n/a
43	CCNT2	chr5:61876573-61876767	K562	blood:	n/a	n/a
44	CCNT2	chr5:61881616-61881828	K562	blood:	n/a	n/a
45	CEBPB	chr5:61884486-61884878	HepG2	liver:	n/a	chr5:61884674-61884685
46	CEBPB	chr5:61883630-61884009	HepG2	liver:	n/a	chr5:61883815-61883826 chr5:61883813-61883824
47	CEBPB	chr5:62086188-62086582	MCF-7	breast:	n/a	chr5:62086349-62086360
48	CEBPB	chr5:62009272-62009475	K562	blood:	n/a	n/a
49	CEBPB	chr5:62086162-62086558	MCF-7	breast:	n/a	chr5:62086349-62086360
50	CEBPB	chr5:61883778-61883905	K562	blood:	n/a	chr5:61883815-61883826 chr5:61883813-61883824

(count:795 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:61874017-61874067	AG10803	skin:	n/a
2	chr5:62073161-62073211	AG04450	lung:	fetal
3	chr5:61874017-61874067	AG10803	skin:	n/a
4	chr5:62073161-62073211	AG04450	lung:	fetal
5	chr5:62073161-62073211	PrEC	prostate:	n/a
6	chr5:62074261-62074311	PANC-1	pancreas:	n/a
7	chr5:61876634-61876684	HAEpiC	amniotic membrane:	n/a
8	chr5:62100540-62100590	PANC-1	pancreas:	n/a
9	chr5:61876634-61876684	IMR90	lung:	fetal
10	chr5:62073623-62073673	BE2_C	brain:	n/a
11	chr5:62072660-62072710	HNPCEpiC	eye:	n/a
12	chr5:62072660-62072710	PANC-1	pancreas:	n/a
13	chr5:62014804-62014854	CMK	blood:	n/a
14	chr5:62014804-62014854	PANC-1	pancreas:	n/a
15	chr5:61876634-61876684	HCF	heart:	n/a
16	chr5:62073623-62073673	HNPCEpiC	eye:	n/a
17	chr5:61890255-61890305	HUVEC	blood vessel:	n/a
18	chr5:62073623-62073673	MCF-7	breast:	n/a
19	chr5:61876634-61876684	Caco-2	colon:	n/a
20	chr5:62071572-62071622	RPTEC	kidney:	n/a
21	chr5:62073161-62073211	Jurkat	blood:	n/a
22	chr5:61890255-61890305	NH-A	brain:	n/a
23	chr5:62072660-62072710	BJ	skin:	n/a
24	chr5:61874017-61874067	Hela-S3	cervix:	n/a
25	chr5:62072660-62072710	HUVEC	blood vessel:	n/a
26	chr5:62014804-62014854	IMR90	lung:	fetal
27	chr5:62073161-62073211	GM12891	blood:	n/a
28	chr5:62073161-62073211	MCF10A-Er-Src	breast:	n/a
29	chr5:61923204-61923254	NB4	blood:	n/a
30	chr5:62073623-62073673	Caco-2	colon:	n/a
31	chr5:62074261-62074311	SK-N-SH_RA	brain:	n/a
32	chr5:62073623-62073673	T-47D	breast:	n/a
33	chr5:62074572-62074622	BJ	skin:	n/a
34	chr5:62073161-62073211	HEEpiC	esophagus:	n/a
35	chr5:62072660-62072710	GM06990	blood:	n/a
36	chr5:62014804-62014854	HepG2	liver:	n/a
37	chr5:62073161-62073211	HUVEC	blood vessel:	n/a
38	chr5:62074572-62074622	AG04450	lung:	fetal
39	chr5:61923204-61923254	PANC-1	pancreas:	n/a
40	chr5:61874017-61874067	BE2_C	brain:	n/a
41	chr5:61917363-61917413	BJ	skin:	n/a
42	chr5:62014804-62014854	AG09309	skin:	n/a
43	chr5:61874017-61874067	K562	blood:	n/a
44	chr5:61874017-61874067	H1-hESC	embryonic stem cell:	embryo
45	chr5:61890255-61890305	SK-N-SH	brain:	n/a
46	chr5:61923204-61923254	NHBE	bronchial:	n/a
47	chr5:61876634-61876684	AG04450	lung:	fetal
48	chr5:62014804-62014854	H1-hESC	embryonic stem cell:	embryo
49	chr5:61917363-61917413	HNPCEpiC	eye:	n/a
50	chr5:62073623-62073673	HUVEC	blood vessel:	n/a

(count:72 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr5:61756022..61757748-chr5:62074424..62075807,9	MCF-7	breast:
2	chr5:62080331..62084292-chr5:62086443..62088883,3	K562	blood:
3	chr5:62061013..62063521-chr5:62063661..62066191,2	K562	blood:
4	chr5:61898028..61900560-chr5:61910431..61912053,2	MCF-7	breast:
5	chr5:61756074..61756595-chr5:61927958..61928492,2	MCF-7	breast:
6	chr5:61905876..61908467-chr5:61910449..61913197,3	K562	blood:
7	chr5:62069461..62071077-chr5:62076501..62078748,2	K562	blood:
8	chr5:62080331..62084292-chr5:62086443..62088883,3	K562	blood:
9	chr5:62061013..62063521-chr5:62063661..62066191,2	K562	blood:
10	chr5:62017098..62019061-chr5:62042354..62044460,2	K562	blood:
11	chr5:62018815..62021360-chr5:62022661..62025357,2	K562	blood:
12	chr5:61892474..61895061-chr5:61895378..61897729,2	K562	blood:
13	chr5:61897835..61900758-chr5:61901696..61904448,2	K562	blood:
14	chr5:61893060..61895061-chr5:61895378..61897801,2	K562	blood:
15	chr5:61886664..61889076-chr5:61892678..61895496,2	MCF-7	breast:
16	chr5:61978360..61980328-chr5:61986158..61988132,2	K562	blood:
17	chr5:61865017..61866532-chr5:61879181..61880802,2	K562	blood:
18	chr5:61936086..61938123-chr5:61944668..61946794,2	K562	blood:
19	chr5:61875725..61878816-chr5:61880010..61882591,3	MCF-7	breast:
20	chr5:61944121..61945939-chr5:61947041..61949118,2	K562	blood:
21	chr5:61875725..61878816-chr5:61880010..61882591,3	MCF-7	breast:
22	chr5:61925893..61927703-chr5:61935030..61937549,2	K562	blood:
23	chr5:61886779..61891355-chr5:61892416..61896612,4	K562	blood:
24	chr5:61833675..61836577-chr5:61862911..61865153,3	K562	blood:
25	chr5:62069461..62071077-chr5:62076501..62078748,2	K562	blood:
26	chr5:62000604..62002658-chr5:62007528..62009304,2	K562	blood:
27	chr5:62030684..62032945-chr5:62039649..62042488,2	MCF-7	breast:
28	chr5:61940617..61943358-chr5:61943464..61946144,3	K562	blood:
29	chr5:61882277..61887456-chr5:61887734..61891517,4	K562	blood:
30	chr5:61872292..61875048-chr5:61884712..61886255,2	K562	blood:
31	chr5:62036443..62039207-chr5:62041195..62044511,3	K562	blood:
32	chr5:61929416..61931059-chr5:61937366..61939285,2	K562	blood:
33	chr5:62078011..62080327-chr5:62081236..62083654,2	K562	blood:
34	chr5:61878602..61881292-chr5:61887209..61889538,2	K562	blood:
35	chr5:61865017..61866532-chr5:61879181..61880802,2	K562	blood:
36	chr5:61886779..61891355-chr5:61892416..61896612,4	K562	blood:
37	chr5:61905876..61908467-chr5:61910449..61913197,3	K562	blood:
38	chr5:61756416..61757318-chr5:62074341..62075268,4	K562	blood:
39	chr5:62002817..62004465-chr5:62011306..62013415,2	K562	blood:
40	chr5:61929416..61931059-chr5:61937366..61939285,2	K562	blood:
41	chr5:61875507..61877206-chr5:61878546..61880725,2	K562	blood:
42	chr5:61909872..61912743-chr5:61916842..61918403,2	MCF-7	breast:
43	chr5:62036443..62039207-chr5:62041195..62044511,3	K562	blood:
44	chr5:61897835..61900758-chr5:61901696..61904448,2	K562	blood:
45	chr5:61886664..61889076-chr5:61892678..61895496,2	MCF-7	breast:
46	chr5:62017098..62019061-chr5:62042354..62044460,2	K562	blood:
47	chr5:62030684..62032945-chr5:62039649..62042488,2	MCF-7	breast:
48	chr5:61882277..61887456-chr5:61887734..61891517,4	K562	blood:
49	chr5:61881611..61886681-chr5:61887454..61890458,4	K562	blood:
50	chr5:61909872..61912743-chr5:61916842..61918403,2	MCF-7	breast:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC70-1	chr5:61874664-61874762	NONHSAT101716
2	lnc-LRRC70-1	chr5:61887404-61887477	NONHSAT101713
3	lnc-IPO11-2	chr5:61963594-61963682	NONHSAT101718
4	lnc-DIMT1-1	chr5:61857686-61858043	NONHSAT101714
5	lnc-IPO11-2	chr5:61957255-61957780	NONHSAT101718
6	lnc-DIMT1-3	chr5:61938348-61938891	NONHSAT101717
7	lnc-LRRC70-1	chr5:61875228-61875310	NONHSAT101716
8	lnc-LRRC70-1	chr5:61856523-61856832	NONHSAT101713
9	lnc-LRRC70-1	chr5:61876281-61877269	NONHSAT101716
10	lnc-LRRC70-1	chr5:61856963-61857084	NONHSAT101713
11	lnc-DIMT1-2	chr5:61871778-61872098	NONHSAT101715
12	lnc-DIMT1-3	chr5:61937940-61938054	NONHSAT101717

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	IPO11	hsa-miR-16-5p	chr5:61923396-61923417

Variant related genes	Relation type
ENSG00000241991	TF binding region
LRRC70	TF binding region
IPO11	TF binding region
ISCA1P1	TF binding region
ENSG00000240436	TF binding region
ENSG00000241991	CpG island
LRRC70	CpG island
IPO11	CpG island
ISCA1P1	CpG island
ENSG00000240436	CpG island
ENSG00000086200	chromatin interactions
ENSG00000217416	chromatin interactions
ENSG00000186105	chromatin interactions

Extended variants
information (count: 6870 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:6870 , 50 per page) page: 1 2 3 4 5 6 7 ... 138

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571333601	chr5:61853682-61853683	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533782404	chr5:61853685-61853686	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs553443059	chr5:61853697-61853698	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs556990472	chr5:61853708-61853709	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567997237	chr5:61853721-61853722	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536536254	chr5:61853729-61853730	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189347544	chr5:61853809-61853810	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576249977	chr5:61853819-61853820	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs180954321	chr5:61853919-61853920	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184123962	chr5:61853920-61853921	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs545162681	chr5:61853926-61853927	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs371101144	chr5:61853939-61853940	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs558634902	chr5:61853945-61853946	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs189551869	chr5:61853956-61853957	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs541459936	chr5:61853959-61853960	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs181822667	chr5:61854057-61854058	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs546086604	chr5:61854077-61854078	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529219960	chr5:61854265-61854266	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186231608	chr5:61854273-61854274	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs562746662	chr5:61854299-61854300	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs531554494	chr5:61854411-61854412	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs190620345	chr5:61854428-61854429	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs181429229	chr5:61854437-61854438	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs527379839	chr5:61854472-61854473	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs547410405	chr5:61854509-61854510	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs543215292	chr5:61854581-61854582	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs567136551	chr5:61854582-61854583	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs377678920	chr5:61854630-61854631	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs32165	chr5:61854650-61854651	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs186594964	chr5:61854652-61854653	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs73760836	chr5:61854748-61854749	Weak transcription Strong transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs538850390	chr5:61854752-61854753	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs141758071	chr5:61854792-61854793	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs572243356	chr5:61854799-61854800	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs534789724	chr5:61854811-61854812	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs554974023	chr5:61854824-61854825	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs560793504	chr5:61854865-61854866	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs574763286	chr5:61854870-61854871	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs543768121	chr5:61854926-61854927	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558784970	chr5:61854951-61854952	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs528262932	chr5:61854959-61854960	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs562782740	chr5:61854975-61854976	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs541163168	chr5:61854977-61854978	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs576360948	chr5:61855034-61855035	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559396755	chr5:61855039-61855040	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs375348212	chr5:61855051-61855052	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs559777341	chr5:61855072-61855073	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs565064422	chr5:61855077-61855078	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs147088226	chr5:61855080-61855081	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs547155791	chr5:61855091-61855092	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Prostate cancer	21965145	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Renal cell carcinoma	18194544	CNVD
abnormal development	18461090	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Colorectal cancer	16774939	CNVD
Myelofibrosis	22110671	CNVD
Neuroticism	17667963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:2004 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61739200-61862800	Weak transcription	Brain Substantia Nigra	brain
2	chr5:61748000-61862800	Weak transcription	Right Ventricle	heart
3	chr5:61758800-61890000	Weak transcription	Small Intestine	intestine
4	chr5:61764000-61858200	Weak transcription	Placenta	Placenta
5	chr5:61764200-61895800	Weak transcription	Pancreas	Pancrea
6	chr5:61771200-61864800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:61771400-61863000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:61781600-61867600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr5:61787400-61866800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:61793600-61905000	Weak transcription	NHEK	skin
11	chr5:61796600-61866600	Weak transcription	Osteobl	bone
12	chr5:61796800-61899000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:61797000-61861200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:61802600-61889000	Weak transcription	NH-A	brain
15	chr5:61803000-61904400	Weak transcription	Fetal Kidney	kidney
16	chr5:61803200-61875000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr5:61803400-61855000	Weak transcription	HSMM	muscle
18	chr5:61803400-61863600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:61804400-61865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:61806800-61863400	Weak transcription	Lung	lung
21	chr5:61812200-61865200	Weak transcription	HUVEC	blood vessel
22	chr5:61815000-61861400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:61815200-61890600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:61816000-61857800	Weak transcription	Fetal Stomach	stomach
25	chr5:61816200-61862200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr5:61819200-61860400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:61819800-61861600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:61821400-61863400	Weak transcription	Aorta	Aorta
29	chr5:61823200-61856000	Weak transcription	Fetal Heart	heart
30	chr5:61827200-61856000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:61827200-61858200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr5:61827200-61861200	Weak transcription	Liver	Liver
33	chr5:61827200-61883600	Weak transcription	HepG2	liver
34	chr5:61827400-61862800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr5:61827400-61899200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr5:61827600-61856000	Weak transcription	Fetal Thymus	thymus
37	chr5:61828200-61854800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:61828200-61855800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr5:61828200-61861600	Weak transcription	Brain Hippocampus Middle	brain
40	chr5:61828200-61862800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr5:61828200-61864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:61828200-61886800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr5:61828600-61855000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:61828600-61858000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr5:61828600-61861600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:61829000-61855000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr5:61830400-61856000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:61831400-61871800	Weak transcription	Psoas Muscle	Psoas
49	chr5:61834200-61861400	Weak transcription	GM12878-XiMat	blood
50	chr5:61834800-61854800	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links