Variant report

Variant	nsv1022908
Chromosome Location	chr6:68128502-68165127
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:68142298..68144870-chr6:68147425..68149399,2	K562	blood:
2	chr6:68148314..68150953-chr6:68152002..68154440,2	K562	blood:
3	chr6:68148314..68150953-chr6:68152002..68154440,2	K562	blood:
4	chr6:68149200..68150953-chr6:68151779..68154440,2	K562	blood:
5	chr6:68151435..68153326-chr6:68157000..68158589,2	MCF-7	breast:
6	chr6:68155527..68157923-chr6:68158676..68160978,2	K562	blood:
7	chr6:68150563..68152778-chr6:68155646..68157250,2	K562	blood:
8	chr6:68150563..68152778-chr6:68155646..68157250,2	K562	blood:
9	chr6:68142298..68144870-chr6:68147425..68149399,2	K562	blood:
10	chr6:68130955..68133450-chr6:68149900..68151602,2	MCF-7	breast:
11	chr6:68155527..68157923-chr6:68158676..68160978,2	K562	blood:
12	chr6:68130955..68133450-chr6:68149900..68151602,2	MCF-7	breast:
13	chr6:68151435..68153326-chr6:68157000..68158589,2	MCF-7	breast:
14	chr6:68149200..68150953-chr6:68151779..68154440,2	K562	blood:
15	chr6:68148937..68151078-chr6:68174672..68177614,2	K562	blood:
16	chr14:90865957..90866488-chr6:68144436..68144955,2	MCF-7	breast:
17	chr6:68161779..68164395-chr6:68176566..68178656,2	K562	blood:
18	chr6:68153475..68156180-chr6:68165524..68167480,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BAI3-8	chr6:68162493-68162620	NONHSAT113386

No data

Variant related genes	Relation type
ENSG00000271111	chromatin interactions
ENSG00000198668	chromatin interactions
ENSG00000251965	chromatin interactions

Extended variants
information (count: 484 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:484 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190932352	chr6:68143202-68143203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs565989328	chr6:68143231-68143232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs535308162	chr6:68143232-68143233	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs557040638	chr6:68143245-68143246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs575524457	chr6:68143328-68143329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs9445872	chr6:68143341-68143342	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs546510244	chr6:68143342-68143343	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs559773659	chr6:68143360-68143361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs570352832	chr6:68143371-68143372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184212790	chr6:68143384-68143385	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs188770619	chr6:68143426-68143427	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs77181903	chr6:68143432-68143433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs191146225	chr6:68143436-68143437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs530957799	chr6:68143456-68143457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs182525510	chr6:68143457-68143458	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs564175963	chr6:68143479-68143480	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs533154685	chr6:68143485-68143486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs188333034	chr6:68143503-68143504	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs546946796	chr6:68143556-68143557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs191674198	chr6:68143579-68143580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs150424748	chr6:68143590-68143591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs537200729	chr6:68144449-68144450	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs35786778	chr6:68144474-68144475	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs397887072	chr6:68144477-68144478	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs570843434	chr6:68144486-68144487	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs543678316	chr6:68144496-68144497	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs538301366	chr6:68144501-68144502	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs563413470	chr6:68144534-68144535	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs558292678	chr6:68144595-68144596	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs578037913	chr6:68144601-68144602	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs540715775	chr6:68144632-68144633	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs76318505	chr6:68144637-68144638	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs12525470	chr6:68144645-68144646	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs536687813	chr6:68144665-68144666	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs542853410	chr6:68144666-68144667	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs143169437	chr6:68144669-68144670	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs573135943	chr6:68144673-68144674	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs542171023	chr6:68144755-68144756	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs144921655	chr6:68144781-68144782	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs12525842	chr6:68144793-68144794	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs141798456	chr6:68144797-68144798	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs373614765	chr6:68144854-68144855	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs543858496	chr6:68144862-68144863	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs144561099	chr6:68144893-68144894	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs562255391	chr6:68144912-68144913	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs527734789	chr6:68144921-68144922	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs150070938	chr6:68144933-68144934	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs397886669	chr6:68144936-68144937	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs148975160	chr6:68148950-68148951	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs72877596	chr6:68148973-68148974	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:68143200-68143600	Enhancers	K562	blood
2	chr6:68156000-68156600	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr6:68159400-68159800	Enhancers	Fetal Heart	heart
4	chr6:68159800-68163000	Weak transcription	Fetal Heart	heart
5	chr6:68163000-68163400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links