Variant report

Variant	nsv1023419
Chromosome Location	chr9:6393886-6415025
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:783)
CpG islands
(count:610)
Chromatin interactive
region (count:23)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:783 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr9:6408431-6408699	K562	blood:	n/a	n/a
2	ATF2	chr9:6412411-6413372	GM12878	blood:	n/a	n/a
3	ATF2	chr9:6412216-6412546	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF2	chr9:6412410-6413365	GM12878	blood:	n/a	n/a
5	ATF2	chr9:6412893-6413353	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF3	chr9:6408408-6408659	K562	blood:	n/a	n/a
7	BACH1	chr9:6413473-6413555	H1-hESC	embryonic stem cell:	n/a	n/a
8	BACH1	chr9:6412549-6413272	H1-hESC	embryonic stem cell:	n/a	n/a
9	BCL11A	chr9:6412600-6413034	GM12878	blood:	n/a	n/a
10	BCL11A	chr9:6412796-6413030	GM12878	blood:	n/a	n/a
11	BCL3	chr9:6412429-6413349	GM12878	blood:	n/a	chr9:6412547-6412560 chr9:6412552-6412565
12	BCLAF1	chr9:6412420-6413716	GM12878	blood:	n/a	chr9:6413655-6413664 chr9:6413653-6413666 chr9:6412547-6412560 chr9:6412552-6412565
13	BCLAF1	chr9:6412664-6413695	GM12878	blood:	n/a	chr9:6413655-6413664 chr9:6413653-6413666
14	BHLHE40	chr9:6412458-6413317	GM12878	blood:	n/a	chr9:6412580-6412596
15	BHLHE40	chr9:6408412-6408647	HepG2	liver:	n/a	n/a
16	BHLHE40	chr9:6408385-6408658	K562	blood:	n/a	n/a
17	BHLHE40	chr9:6412870-6413232	K562	blood:	n/a	n/a
18	BRCA1	chr9:6414116-6414547	H1-hESC	embryonic stem cell:	n/a	n/a
19	BRCA1	chr9:6412858-6413427	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr9:6412740-6413428	GM12878	blood:	n/a	n/a
21	BRCA1	chr9:6412951-6413362	HepG2	liver:	n/a	n/a
22	BRCA1	chr9:6412822-6413380	H1-hESC	embryonic stem cell:	n/a	n/a
23	CBX3	chr9:6412407-6413211	K562	blood:	n/a	n/a
24	CBX3	chr9:6412370-6412986	K562	blood:	n/a	n/a
25	CCNT2	chr9:6412510-6414194	K562	blood:	n/a	chr9:6413042-6413051
26	CEBPB	chr9:6412803-6413372	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr9:6412834-6413160	K562	blood:	n/a	n/a
28	CEBPB	chr9:6412358-6413103	GM12878	blood:	n/a	n/a
29	CEBPB	chr9:6405472-6405788	IMR90	lung:	n/a	chr9:6405557-6405570 chr9:6405619-6405630 chr9:6405559-6405570
30	CEBPB	chr9:6405490-6405703	HepG2	liver:	n/a	chr9:6405557-6405570 chr9:6405619-6405630 chr9:6405559-6405570
31	CEBPB	chr9:6405482-6405699	A549	lung:	n/a	chr9:6405557-6405570 chr9:6405619-6405630 chr9:6405559-6405570
32	CEBPB	chr9:6405496-6405697	K562	blood:	n/a	chr9:6405557-6405570 chr9:6405619-6405630 chr9:6405559-6405570
33	CEBPD	chr9:6413048-6413330	HepG2	liver:	n/a	n/a
34	CHD1	chr9:6414945-6415396	GM12878	blood:	n/a	n/a
35	CHD1	chr9:6413711-6414174	H1-hESC	embryonic stem cell:	n/a	n/a
36	CHD1	chr9:6412299-6412888	H1-hESC	embryonic stem cell:	n/a	n/a
37	CHD1	chr9:6412629-6414712	GM12878	blood:	n/a	n/a
38	CHD2	chr9:6412457-6414120	GM12878	blood:	n/a	n/a
39	CHD2	chr9:6412632-6414056	Hela-S3	cervix:	n/a	n/a
40	CHD2	chr9:6412854-6413750	HepG2	liver:	n/a	n/a
41	CHD2	chr9:6412339-6413710	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD2	chr9:6412692-6413533	K562	blood:	n/a	n/a
43	CREB1	chr9:6412878-6413399	H1-hESC	embryonic stem cell:	n/a	n/a
44	CREB1	chr9:6412834-6413426	A549	lung:	n/a	n/a
45	CREB1	chr9:6412472-6413731	GM12878	blood:	n/a	n/a
46	CTBP2	chr9:6412371-6413332	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTCF	chr9:6412420-6412570	HRPEpiC	eye:	n/a	n/a
48	CTCF	chr9:6412931-6413007	Kidney_OC	kidney:	n/a	n/a
49	CTCF	chr9:6412880-6413030	SK-N-SH_RA	brain:	n/a	n/a
50	CTCF	chr9:6413500-6413639	MCF-7	breast:	n/a	n/a

(count:610 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:6413544-6413594	AoSMC	blood vessel:	n/a
2	chr9:6412991-6413041	NT2-D1	testis:	n/a
3	chr9:6413544-6413594	HL-60	blood:	n/a
4	chr9:6412886-6412936	GM12891	blood:	n/a
5	chr9:6412836-6412886	GM12878	blood:	n/a
6	chr9:6413544-6413594	HRCEpiC	kidney:	n/a
7	chr9:6414096-6414146	Hela-S3	cervix:	n/a
8	chr9:6412991-6413041	NHDF-neo	bronchial:	n/a
9	chr9:6413045-6413095	K562	blood:	n/a
10	chr9:6414096-6414146	HNPCEpiC	eye:	n/a
11	chr9:6412836-6412886	BE2_C	brain:	n/a
12	chr9:6413167-6413217	CMK	blood:	n/a
13	chr9:6414194-6414244	AG04450	lung:	fetal
14	chr9:6414194-6414244	H1-hESC	embryonic stem cell:	embryo
15	chr9:6414194-6414244	LNCaP	prostate:	n/a
16	chr9:6413045-6413095	HCT-116	colon:	n/a
17	chr9:6412886-6412936	T-47D	breast:	n/a
18	chr9:6414194-6414244	BE2_C	brain:	n/a
19	chr9:6411086-6411136	NH-A	brain:	n/a
20	chr9:6413852-6413902	Hela-S3	cervix:	n/a
21	chr9:6412991-6413041	AoSMC	blood vessel:	n/a
22	chr9:6414194-6414244	Hepatocyte	liver:	n/a
23	chr9:6413852-6413902	HCT-116	colon:	n/a
24	chr9:6413852-6413902	NB4	blood:	n/a
25	chr9:6413167-6413217	MCF10A-Er-Src	breast:	n/a
26	chr9:6413167-6413217	SK-N-SH_RA	brain:	n/a
27	chr9:6413045-6413095	SAEC	small airway:	n/a
28	chr9:6414096-6414146	IMR90	lung:	fetal
29	chr9:6413167-6413217	T-47D	breast:	n/a
30	chr9:6411086-6411136	GM19239	blood:	n/a
31	chr9:6411086-6411136	BE2_C	brain:	n/a
32	chr9:6412886-6412936	RPTEC	kidney:	n/a
33	chr9:6414096-6414146	ECC-1	luminal epithelium:	n/a
34	chr9:6414194-6414244	HEK293	kidney:	embryo
35	chr9:6413544-6413594	Jurkat	blood:	n/a
36	chr9:6411086-6411136	HRCEpiC	kidney:	n/a
37	chr9:6412836-6412886	HRPEpiC	eye:	n/a
38	chr9:6413167-6413217	AG09319	gingival:	n/a
39	chr9:6413167-6413217	HMEC	breast:	n/a
40	chr9:6414194-6414244	HCM	heart:	n/a
41	chr9:6414096-6414146	Hepatocyte	liver:	n/a
42	chr9:6412886-6412936	LNCaP	prostate:	n/a
43	chr9:6413167-6413217	HEEpiC	esophagus:	n/a
44	chr9:6412836-6412886	LNCaP	prostate:	n/a
45	chr9:6413167-6413217	NHDF-neo	bronchial:	n/a
46	chr9:6412886-6412936	HAEpiC	amniotic membrane:	n/a
47	chr9:6413167-6413217	HCM	heart:	n/a
48	chr9:6412886-6412936	GM12878	blood:	n/a
49	chr9:6411086-6411136	HUVEC	blood vessel:	n/a
50	chr9:6413852-6413902	PANC-1	pancreas:	n/a

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:108210164..108210733-chr9:6413005..6413576,2	Hela-S3	cervix:
2	chr1:11968667..11972683-chr9:6399248..6402268,5	K562	blood:
3	chr9:6398344..6401128-chr9:6407574..6409551,2	K562	blood:
4	chr15:44718353..44719694-chr9:6411917..6413110,3	NB4	blood:
5	chr9:6413056..6413599-chrX:150565656..150566334,2	Hela-S3	cervix:
6	chr9:6413251..6414875-chr9:6756450..6759044,2	K562	blood:
7	chr1:11969564..11971245-chr9:6400768..6402268,2	K562	blood:
8	chr9:6413231..6415998-chr9:6419721..6423966,4	MCF-7	breast:
9	chr9:6398344..6401128-chr9:6407574..6409551,2	K562	blood:
10	chr9:6411580..6414419-chr9:6755713..6757647,2	K562	blood:
11	chr9:6408551..6411662-chr9:6412630..6415165,4	MCF-7	breast:
12	chr9:6411739..6415458-chr9:6420668..6426596,8	K562	blood:
13	chr9:6412168..6415418-chr9:6418500..6425043,7	MCF-7	breast:
14	chr9:6410972..6413613-chr9:6564070..6565701,2	MCF-7	breast:
15	chr19:47616230..47616761-chr9:6413307..6414303,2	NB4	blood:
16	chr9:6408168..6410435-chr9:6411394..6414242,2	K562	blood:
17	chr2:85132788..85133313-chr9:6412396..6412970,2	NB4	blood:
18	chr9:6412621..6414719-chr9:6496485..6499094,2	K562	blood:
19	chr11:64546386..64547209-chr9:6411955..6412774,2	NB4	blood:
20	chr1:94312260..94313044-chr9:6412226..6412915,2	NB4	blood:
21	chr9:6411889..6413422-chr9:6565833..6568598,2	K562	blood:
22	chr1:8021266..8021839-chr9:6413033..6413897,2	Hela-S3	cervix:
23	chr9:6389667..6391498-chr9:6396973..6399114,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf38-2	chr9:6411815-6411865	NONHSAT130128
2	lnc-C9orf38-2	chr9:6408525-6408756	XLOC_007638
3	lnc-C9orf38-2	chr9:6411816-6411865	XLOC_007638
4	lnc-C9orf38-2	chr9:6408524-6408756	NONHSAT130128
5	lnc-TPD52L3-2	chr9:6413777-6413911	NONHSAT130130

No data

Variant related genes	Relation type
UHRF2	TF binding region
UHRF2	CpG island
ENSG00000116288	chromatin interactions
ENSG00000211575	chromatin interactions
ENSG00000269038	chromatin interactions
ENSG00000160131	chromatin interactions
ENSG00000177683	chromatin interactions
ENSG00000260464	chromatin interactions
ENSG00000137936	chromatin interactions
ENSG00000142230	chromatin interactions
ENSG00000137770	chromatin interactions
ENSG00000178445	chromatin interactions
ENSG00000107077	chromatin interactions
ENSG00000128590	chromatin interactions
ENSG00000201801	chromatin interactions
ENSG00000252110	chromatin interactions
ENSG00000147854	chromatin interactions
ENSG00000259595	chromatin interactions

Extended variants
information (count: 680 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:680 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541537105	chr9:6398640-6398641	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs375620212	chr9:6398711-6398712	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs572280475	chr9:6398751-6398752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs546074461	chr9:6398786-6398787	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs150389571	chr9:6398815-6398816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs530355489	chr9:6398818-6398819	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs533148297	chr9:6398830-6398831	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs183478332	chr9:6398861-6398862	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs560225258	chr9:6398881-6398882	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs543088048	chr9:6399023-6399024	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs532427099	chr9:6399071-6399072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs561802266	chr9:6399097-6399098	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs79975071	chr9:6399107-6399108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs547104038	chr9:6399115-6399116	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs551935629	chr9:6399120-6399121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs574947757	chr9:6399171-6399172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs533351061	chr9:6399197-6399198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs79343485	chr9:6399212-6399213	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs138177528	chr9:6399282-6399283	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs118113019	chr9:6399290-6399291	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs76868525	chr9:6399307-6399308	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs12005375	chr9:6399313-6399314	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs111370465	chr9:6399360-6399361	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs567667318	chr9:6399369-6399370	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs188569661	chr9:6399414-6399415	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs553508188	chr9:6399499-6399500	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs922221	chr9:6399588-6399589	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs546062904	chr9:6399608-6399609	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs374290557	chr9:6399611-6399612	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs149585649	chr9:6399615-6399616	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs34326663	chr9:6399627-6399628	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs576289522	chr9:6399635-6399636	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs543719738	chr9:6399682-6399683	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs561489368	chr9:6399694-6399695	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs192879287	chr9:6399696-6399697	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs540676495	chr9:6399698-6399699	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs28448281	chr9:6399709-6399710	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs533339413	chr9:6399714-6399715	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs555685676	chr9:6399716-6399717	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs62566112	chr9:6399725-6399726	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs199553048	chr9:6399731-6399732	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs551592901	chr9:6399738-6399739	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs563985763	chr9:6399816-6399817	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs115308807	chr9:6399821-6399822	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs549660842	chr9:6399842-6399843	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs567503631	chr9:6399843-6399844	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs550415019	chr9:6399861-6399862	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs553796889	chr9:6399874-6399875	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs183113490	chr9:6399907-6399908	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs113397145	chr9:6399930-6399931	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Dyslexia	22102821	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:450 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6398600-6400200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:6398800-6399800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:6398800-6399800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:6398800-6399800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:6398800-6399800	Enhancers	HepG2	liver
6	chr9:6404600-6406200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:6405200-6405400	Enhancers	Thymus	Thymus
8	chr9:6405200-6405800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr9:6405400-6412200	Weak transcription	Thymus	Thymus
10	chr9:6405800-6410600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr9:6406000-6406200	Weak transcription	HepG2	liver
12	chr9:6406000-6407000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:6406200-6407800	Enhancers	HepG2	liver
14	chr9:6407000-6411800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:6407800-6408000	Flanking Active TSS	HepG2	liver
16	chr9:6408000-6408400	Enhancers	HepG2	liver
17	chr9:6408200-6408800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:6408200-6412200	Weak transcription	Primary T cells from cord blood	blood
19	chr9:6408400-6408800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:6408400-6408800	Enhancers	Pancreas	Pancrea
21	chr9:6408400-6408800	Enhancers	K562	blood
22	chr9:6408400-6409000	Flanking Active TSS	HepG2	liver
23	chr9:6408400-6409800	Enhancers	Liver	Liver
24	chr9:6408600-6408800	Enhancers	NHEK	skin
25	chr9:6408800-6411800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:6408800-6412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:6408800-6412400	Weak transcription	Pancreas	Pancrea
28	chr9:6409000-6409800	Enhancers	HepG2	liver
29	chr9:6409000-6412200	Weak transcription	NHEK	skin
30	chr9:6409800-6412400	Weak transcription	Liver	Liver
31	chr9:6410000-6412200	Enhancers	Primary B cells from peripheral blood	blood
32	chr9:6410000-6412400	Enhancers	Primary B cells from cord blood	blood
33	chr9:6410000-6412600	Enhancers	Primary hematopoietic stem cells	blood
34	chr9:6410200-6410400	Enhancers	Brain Angular Gyrus	brain
35	chr9:6410200-6410400	Enhancers	Fetal Stomach	stomach
36	chr9:6410200-6410800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:6410400-6410800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:6410600-6410800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr9:6410600-6410800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:6410600-6411000	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr9:6410600-6412000	Weak transcription	Fetal Stomach	stomach
42	chr9:6410600-6412200	Weak transcription	Brain Angular Gyrus	brain
43	chr9:6410600-6412400	Enhancers	GM12878-XiMat	blood
44	chr9:6410800-6411800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:6410800-6412200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:6410800-6412200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:6411000-6412200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:6411000-6412200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr9:6411800-6412200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr9:6411800-6412200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links