Variant report

Variant	nsv1023566
Chromosome Location	chr7:3134090-3159323
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:3154011..3155575-chr7:3158921..3161053,2	K562	blood:
2	chr7:3140254..3142201-chr7:3143047..3144954,2	MCF-7	breast:
3	chr7:3154011..3155575-chr7:3158921..3161053,2	K562	blood:
4	chr7:3148059..3150534-chr7:3151006..3152602,2	K562	blood:
5	chr7:3148059..3150534-chr7:3151006..3152602,2	K562	blood:
6	chr7:3140254..3142201-chr7:3143047..3144954,2	MCF-7	breast:
7	chr7:3153512..3155575-chr7:3157437..3160421,2	K562	blood:
8	chr7:3149067..3151848-chr7:3153141..3155558,2	K562	blood:
9	chr7:3149067..3151848-chr7:3153141..3155558,2	K562	blood:
10	chr7:3153512..3155575-chr7:3157437..3160421,2	K562	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC091801.1.1-5	chr7:3137039-3137347	NONHSAT118841
2	lnc-AC091801.1.1-5	chr7:3133765-3135219	XLOC_006338
3	lnc-AC091801.1.1-5	chr7:3133765-3135219	XLOC_006338
4	lnc-AC091801.1.1-5	chr7:3157609-3157650	XLOC_006338
5	lnc-AC091801.1.1-5	chr7:3140656-3140708	XLOC_006338
6	lnc-AC091801.1.1-5	chr7:3140656-3140688	XLOC_006338
7	lnc-AC091801.1.1-8	chr7:3153155-3153431	ucscGeneNc_uc003smw_1
8	lnc-AC091801.1.1-5	chr7:3137040-3137347	XLOC_006338
9	lnc-AC091801.1.1-5	chr7:3140655-3140688	NONHSAT118841

No data

Variant related genes	Relation type
PTPN4	miRNA target sites
PLIN3	miRNA target sites
C3orf59	miRNA target sites
PRKAB2	miRNA target sites

Extended variants
information (count: 1455 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:1455 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78767545	chr7:3134112-3134113	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs553806258	chr7:3134121-3134122	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs73050273	chr7:3134144-3134145	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs76855731	chr7:3134159-3134160	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs141289529	chr7:3134169-3134170	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs183117237	chr7:3134173-3134174	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs187858961	chr7:3134175-3134176	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs530207422	chr7:3134190-3134191	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs533426939	chr7:3134232-3134233	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs146561657	chr7:3134261-3134262	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs148337699	chr7:3134266-3134267	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs541640589	chr7:3134295-3134296	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs561505489	chr7:3134335-3134336	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs529780121	chr7:3134338-3134339	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs192489201	chr7:3134340-3134341	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs569604323	chr7:3134350-3134351	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs183888850	chr7:3134351-3134352	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs552405649	chr7:3134368-3134369	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs565643298	chr7:3134382-3134383	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs187902352	chr7:3134433-3134434	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs192043630	chr7:3134454-3134455	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs184591836	chr7:3134487-3134488	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs141465049	chr7:3134494-3134495	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs150949885	chr7:3134495-3134496	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs192863878	chr7:3134497-3134498	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs562951832	chr7:3134506-3134507	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs184954294	chr7:3134520-3134521	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs559038538	chr7:3134521-3134522	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs572766724	chr7:3134523-3134524	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs1011189	chr7:3134524-3134525	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs561443184	chr7:3134526-3134527	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs199664516	chr7:3134535-3134536	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs376791859	chr7:3134536-3134537	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs530250380	chr7:3134546-3134547	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs150411942	chr7:3134557-3134558	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs4236317	chr7:3134593-3134594	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs532087383	chr7:3134596-3134597	Flanking Active TSS Active TSS Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs551753949	chr7:3134601-3134602	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs17132961	chr7:3134635-3134636	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs138132972	chr7:3134645-3134646	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs567886474	chr7:3134658-3134659	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs536868534	chr7:3134669-3134670	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs76188411	chr7:3134682-3134683	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs374580407	chr7:3134713-3134714	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs189410793	chr7:3134726-3134727	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs539161877	chr7:3134735-3134736	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs528307776	chr7:3134739-3134740	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs572500375	chr7:3134754-3134755	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs75456781	chr7:3134758-3134759	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs149642903	chr7:3134767-3134768	Flanking Active TSS Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Chordoma	21602918	CNVD
Lynch syndrome	22585707	CNVD
Follicular lymphoma	20505157	CNVD
Breast cancer	16397240	CNVD
Raine Syndrome	17924334	CNVD
Diffuse large b-cell lymphoma	21266526	CNVD
Melanoma	18172304	CNVD
Sudden cardiac death	19188705	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Glioma	18556773	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Developmental delay	21147756	CNVD
Prostate cancer	18632612	CNVD
Urothelial carcinoma	21177765	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Nasopharyngeal cancer	20548289	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
Spondylocostal dysostosis	21085971	CNVD
Mental retardation	17901693	CNVD
Heart disease	21282601	CNVD
Glioblastoma multiforme	22286061	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:315 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3128800-3134200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr7:3128800-3134400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:3129400-3134200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:3129600-3134600	Enhancers	Fetal Thymus	thymus
5	chr7:3130200-3134400	Enhancers	Primary B cells from peripheral blood	blood
6	chr7:3130200-3134400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:3130600-3134200	Enhancers	Primary B cells from cord blood	blood
8	chr7:3131200-3134400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:3131800-3134400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:3132400-3134200	Enhancers	Primary T cells from cord blood	blood
11	chr7:3132400-3134200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr7:3132600-3134200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr7:3132600-3134400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr7:3132600-3134400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr7:3132600-3135000	Weak transcription	Dnd41	blood
16	chr7:3132800-3134200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:3132800-3134400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr7:3133400-3134400	Enhancers	Thymus	Thymus
19	chr7:3133600-3134200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr7:3133600-3134400	Enhancers	Primary hematopoietic stem cells	blood
21	chr7:3133800-3134400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:3133800-3135200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr7:3133800-3135400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:3134000-3134400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr7:3134000-3134600	Enhancers	GM12878-XiMat	blood
26	chr7:3134000-3135200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr7:3134000-3135200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr7:3134000-3135200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr7:3134000-3135400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:3134200-3135000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr7:3134200-3135200	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr7:3134200-3135200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr7:3134200-3135200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr7:3134200-3135200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr7:3134200-3135400	Flanking Active TSS	Primary T cells from cord blood	blood
36	chr7:3134200-3135400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr7:3134200-3135400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr7:3134400-3134600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:3134400-3134800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr7:3134400-3134800	Flanking Active TSS	Thymus	Thymus
41	chr7:3134400-3135000	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr7:3134400-3135200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
43	chr7:3134400-3135200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr7:3134400-3135200	Flanking Active TSS	Primary B cells from peripheral blood	blood
45	chr7:3134400-3135200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr7:3134400-3135200	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr7:3134400-3135200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr7:3134400-3135200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:3134400-3135400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:3134600-3134800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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