Variant report

Variant	nsv1023591
Chromosome Location	chr8:64446416-64477621
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:64460709..64463439-chr8:64465301..64467197,2	K562	blood:
2	chr8:64458732..64460649-chr8:64460951..64463159,2	MCF-7	breast:
3	chr8:64460709..64463439-chr8:64465301..64467197,2	K562	blood:
4	chr8:64458732..64460649-chr8:64460951..64463159,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTPA-9	chr8:64459951-64461018	ucscGeneNc_uc003xvb_1

Extended variants
information (count: 333 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:333 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115267112	chr8:64453416-64453417	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs190214875	chr8:64453423-64453424	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs548607830	chr8:64453475-64453476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs563855434	chr8:64453476-64453477	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs182110002	chr8:64453512-64453513	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs551819364	chr8:64453557-64453558	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs570196261	chr8:64453578-64453579	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs534439116	chr8:64453590-64453591	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs546184936	chr8:64453591-64453592	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs141593823	chr8:64456244-64456245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs549598075	chr8:64456256-64456257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs146214435	chr8:64456277-64456278	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs139090940	chr8:64456281-64456282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs75703887	chr8:64456328-64456329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs566866010	chr8:64456336-64456337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs149887301	chr8:64456372-64456373	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs371357108	chr8:64456385-64456386	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs574120323	chr8:64456437-64456438	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs538428339	chr8:64456440-64456441	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs556826377	chr8:64456441-64456442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs577810840	chr8:64456443-64456444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs548940989	chr8:64456472-64456473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs192503938	chr8:64456513-64456514	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs111318354	chr8:64456524-64456525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs190519010	chr8:64456529-64456530	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs115812723	chr8:64456535-64456536	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs145395463	chr8:64456541-64456542	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs561219245	chr8:64456599-64456600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs181458389	chr8:64456619-64456620	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs549561061	chr8:64456622-64456623	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs564777888	chr8:64456637-64456638	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs533211505	chr8:64456654-64456655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs374400834	chr8:64456662-64456663	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs117413838	chr8:64456666-64456667	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs148789341	chr8:64456670-64456671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs559412832	chr8:64456705-64456706	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs534217169	chr8:64456709-64456710	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs370194086	chr8:64456803-64456804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs142465044	chr8:64456814-64456815	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs538587718	chr8:64456817-64456818	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs184412012	chr8:64456840-64456841	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs77544372	chr8:64456858-64456859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs374000401	chr8:64456861-64456862	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs207469283	chr8:64456890-64456891	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs537126089	chr8:64456903-64456904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs553853929	chr8:64456908-64456909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs572080595	chr8:64456990-64456991	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs7462453	chr8:64456996-64456997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs528600297	chr8:64457019-64457020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs188409929	chr8:64457021-64457022	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD
Colorectal cancer	21645411	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64453400-64453600	ZNF genes & repeats	Pancreas	Pancrea
2	chr8:64456200-64457200	Enhancers	Fetal Muscle Leg	muscle
3	chr8:64456400-64457000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:64470400-64470800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:64470800-64473200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:64471000-64473200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:64471600-64472600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr8:64472200-64473400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:64472400-64472800	ZNF genes & repeats	Liver	Liver
10	chr8:64473400-64478800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:64474400-64474600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:64474600-64474800	Enhancers	Psoas Muscle	Psoas
13	chr8:64474600-64475800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:64475400-64475600	Enhancers	Fetal Brain Male	brain
15	chr8:64475400-64475600	Enhancers	Fetal Brain Female	brain
16	chr8:64475600-64477200	Weak transcription	Fetal Brain Female	brain
17	chr8:64475800-64476800	Weak transcription	Fetal Brain Male	brain
18	chr8:64476200-64478000	Enhancers	Brain Germinal Matrix	brain
19	chr8:64476800-64477000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:64476800-64479800	Enhancers	Fetal Brain Male	brain
21	chr8:64477000-64478000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:64477200-64478200	Enhancers	Fetal Brain Female	brain
23	chr8:64477200-64478400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:64477400-64477800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:64477600-64478600	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links