Variant report

Variant	nsv1023803
Chromosome Location	chr8:11623570-11721655
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4358)
CpG islands
(count:3301)
Chromatin interactive
region (count:150)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4358 , 50 per page) page: 1 2 3 4 5 6 7 ... 88

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr8:11660241-11660402	HepG2	liver:	n/a	n/a
2	ARID3A	chr8:11670385-11670535	HepG2	liver:	n/a	n/a
3	ARID3A	chr8:11719967-11720499	HepG2	liver:	n/a	n/a
4	ARID3A	chr8:11671599-11671984	HepG2	liver:	n/a	n/a
5	ARID3A	chr8:11720016-11720613	K562	blood:	n/a	n/a
6	ARID3A	chr8:11645370-11645579	K562	blood:	n/a	n/a
7	ARID3A	chr8:11657809-11657977	HepG2	liver:	n/a	n/a
8	ARID3A	chr8:11656609-11656929	K562	blood:	n/a	n/a
9	ARID3A	chr8:11659794-11660028	HepG2	liver:	n/a	n/a
10	ARID3A	chr8:11627044-11627196	HepG2	liver:	n/a	n/a
11	ARID3A	chr8:11711460-11711976	HepG2	liver:	n/a	n/a
12	ARID3A	chr8:11710564-11710991	HepG2	liver:	n/a	n/a
13	ARID3A	chr8:11666175-11666691	HepG2	liver:	n/a	n/a
14	ARID3A	chr8:11656441-11656736	HepG2	liver:	n/a	n/a
15	ARID3A	chr8:11660655-11661419	K562	blood:	n/a	n/a
16	ARID3A	chr8:11659764-11660172	K562	blood:	n/a	n/a
17	ATF1	chr8:11677780-11678103	K562	blood:	n/a	n/a
18	ATF1	chr8:11656586-11657065	K562	blood:	n/a	n/a
19	ATF1	chr8:11719934-11720561	K562	blood:	n/a	n/a
20	ATF2	chr8:11718117-11718791	GM12878	blood:	n/a	n/a
21	ATF2	chr8:11640315-11640753	GM12878	blood:	n/a	n/a
22	ATF2	chr8:11718234-11718663	GM12878	blood:	n/a	n/a
23	ATF2	chr8:11716064-11716683	GM12878	blood:	n/a	n/a
24	ATF2	chr8:11659666-11660052	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr8:11625945-11626417	GM12878	blood:	n/a	n/a
26	ATF2	chr8:11704572-11705318	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF3	chr8:11711440-11711869	K562	blood:	n/a	chr8:11711746-11711755
28	ATF3	chr8:11686227-11686415	K562	blood:	n/a	n/a
29	ATF3	chr8:11720050-11720523	K562	blood:	n/a	n/a
30	ATF3	chr8:11711524-11711774	K562	blood:	n/a	chr8:11711746-11711755
31	ATF3	chr8:11711190-11711884	A549	lung:	n/a	chr8:11711746-11711755
32	BACH1	chr8:11626951-11627031	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr8:11666079-11666400	H1-hESC	embryonic stem cell:	n/a	n/a
34	BACH1	chr8:11671211-11671244	K562	blood:	n/a	n/a
35	BACH1	chr8:11720086-11720270	K562	blood:	n/a	n/a
36	BACH1	chr8:11662812-11663108	K562	blood:	n/a	n/a
37	BACH1	chr8:11659730-11660126	H1-hESC	embryonic stem cell:	n/a	n/a
38	BACH1	chr8:11660680-11660740	H1-hESC	embryonic stem cell:	n/a	n/a
39	BATF	chr8:11718298-11718610	GM12878	blood:	n/a	chr8:11718530-11718541
40	BATF	chr8:11656623-11656908	GM12878	blood:	n/a	n/a
41	BATF	chr8:11640162-11640797	GM12878	blood:	n/a	n/a
42	BATF	chr8:11640137-11640748	GM12878	blood:	n/a	n/a
43	BATF	chr8:11718273-11718716	GM12878	blood:	n/a	chr8:11718530-11718541
44	BCL11A	chr8:11716227-11716542	GM12878	blood:	n/a	n/a
45	BCL11A	chr8:11626077-11626278	GM12878	blood:	n/a	n/a
46	BCL11A	chr8:11640194-11640825	GM12878	blood:	n/a	n/a
47	BCL11A	chr8:11718308-11718637	GM12878	blood:	n/a	n/a
48	BCL11A	chr8:11716165-11716612	GM12878	blood:	n/a	n/a
49	BCL11A	chr8:11718244-11718588	GM12878	blood:	n/a	n/a
50	BCL11A	chr8:11640167-11640814	GM12878	blood:	n/a	n/a

(count:3301 , 50 per page) page: 1 2 3 4 5 6 7 ... 67

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:11659961-11660011	PANC-1	pancreas:	n/a
2	chr8:11652356-11652406	Jurkat	blood:	n/a
3	chr8:11665962-11666012	T-47D	breast:	n/a
4	chr8:11644644-11644694	Jurkat	blood:	n/a
5	chr8:11670382-11670432	T-47D	breast:	n/a
6	chr8:11630219-11630269	SK-N-MC	brain:	n/a
7	chr8:11717853-11717903	K562	blood:	n/a
8	chr8:11659961-11660011	PANC-1	pancreas:	n/a
9	chr8:11652356-11652406	Jurkat	blood:	n/a
10	chr8:11665962-11666012	T-47D	breast:	n/a
11	chr8:11644644-11644694	Jurkat	blood:	n/a
12	chr8:11670382-11670432	T-47D	breast:	n/a
13	chr8:11630219-11630269	SK-N-MC	brain:	n/a
14	chr8:11717853-11717903	K562	blood:	n/a
15	chr8:11623524-11623574	GM12878	blood:	n/a
16	chr8:11719367-11719417	NB4	blood:	n/a
17	chr8:11660733-11660783	HUVEC	blood vessel:	n/a
18	chr8:11659970-11660020	GM19239	blood:	n/a
19	chr8:11652174-11652224	AG04450	lung:	fetal
20	chr8:11627812-11627862	LNCaP	prostate:	n/a
21	chr8:11625764-11625814	AG09319	gingival:	n/a
22	chr8:11668491-11668541	NH-A	brain:	n/a
23	chr8:11627012-11627062	GM06990	blood:	n/a
24	chr8:11626984-11627034	AG09309	skin:	n/a
25	chr8:11653368-11653418	MCF-7	breast:	n/a
26	chr8:11660030-11660080	AG09319	gingival:	n/a
27	chr8:11627012-11627062	HRE	kidney:	n/a
28	chr8:11659970-11660020	NHDF-neo	bronchial:	n/a
29	chr8:11656692-11656742	HCT-116	colon:	n/a
30	chr8:11627280-11627330	AG10803	skin:	n/a
31	chr8:11659961-11660011	NHDF-neo	bronchial:	n/a
32	chr8:11668491-11668541	AG04449	skin:	fetal
33	chr8:11715284-11715334	HMEC	breast:	n/a
34	chr8:11652174-11652224	CMK	blood:	n/a
35	chr8:11653276-11653326	NB4	blood:	n/a
36	chr8:11660209-11660259	ECC-1	luminal epithelium:	n/a
37	chr8:11660733-11660783	NH-A	brain:	n/a
38	chr8:11719367-11719417	SAEC	small airway:	n/a
39	chr8:11625883-11625933	HRE	kidney:	n/a
40	chr8:11628346-11628396	HepG2	liver:	n/a
41	chr8:11660924-11660974	H1-hESC	embryonic stem cell:	embryo
42	chr8:11663584-11663634	NH-A	brain:	n/a
43	chr8:11719367-11719417	HCM	heart:	n/a
44	chr8:11625764-11625814	HUVEC	blood vessel:	n/a
45	chr8:11659497-11659547	AG09319	gingival:	n/a
46	chr8:11627058-11627108	HCT-116	colon:	n/a
47	chr8:11665843-11665893	T-47D	breast:	n/a
48	chr8:11717853-11717903	HIPEpiC	eye:	n/a
49	chr8:11660030-11660080	K562	blood:	n/a
50	chr8:11627480-11627530	IMR90	lung:	fetal

(count:150 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr8:11643528..11645314-chr8:11650082..11652912,2	MCF-7	breast:
2	chr8:11660132..11662159-chr8:11687088..11688698,2	MCF-7	breast:
3	chr8:11635165..11636835-chr8:11660450..11662194,2	MCF-7	breast:
4	chr8:11652965..11656305-chr8:11661939..11664556,3	K562	blood:
5	chr8:11708825..11713035-chr8:11718721..11724039,7	MCF-7	breast:
6	chr8:11625684..11627765-chr8:11645905..11648269,2	K562	blood:
7	chr8:11640779..11643782-chr8:11659893..11662754,3	MCF-7	breast:
8	chr8:11628045..11631391-chr8:11641711..11643829,4	K562	blood:
9	chr8:11625747..11629309-chr8:11658765..11661345,4	K562	blood:
10	chr8:11652587..11657894-chr8:11658127..11661459,7	K562	blood:
11	chr8:11662566..11665636-chr8:11705504..11707081,3	K562	blood:
12	chr8:11714135..11717431-chr8:11717814..11720890,3	K562	blood:
13	chr11:2398309..2399006-chr8:11659548..11660515,2	HCT-116	colon:
14	chr8:11695667..11699183-chr8:11720606..11722768,3	K562	blood:
15	chr20:58672783..58673686-chr8:11698085..11698795,2	NB4	blood:
16	chr8:11664303..11666890-chr8:11705423..11707941,2	MCF-7	breast:
17	chr8:11717778..11719934-chr8:11735920..11738113,2	MCF-7	breast:
18	chr8:11640245..11642389-chr8:11658512..11660745,2	K562	blood:
19	chr6:24666810..24667602-chr8:11659901..11660485,2	HCT-116	colon:
20	chr8:11629021..11631913-chr8:11640649..11643733,4	K562	blood:
21	chr8:11664303..11666890-chr8:11705423..11707941,2	MCF-7	breast:
22	chr8:11693196..11696107-chr8:11696780..11702016,6	K562	blood:
23	chr5:42992943..42993905-chr8:11627464..11628186,2	Hela-S3	cervix:
24	chr8:11683203..11685176-chr8:11688978..11690552,2	K562	blood:
25	chr10:124484205..124484883-chr8:11688873..11689373,2	MCF-7	breast:
26	chr8:11635191..11637008-chr8:11641548..11643752,2	K562	blood:
27	chr8:11695946..11697771-chr8:11722616..11724742,2	MCF-7	breast:
28	chr8:11709901..11713097-chr8:11718255..11721625,5	MCF-7	breast:
29	chr8:11637260..11639168-chr8:11645099..11647488,2	MCF-7	breast:
30	chr8:11622902..11623629-chr8:11759456..11760412,3	MCF-7	breast:
31	chr8:11665243..11667469-chr8:11710761..11712863,3	MCF-7	breast:
32	chr8:11708512..11715317-chr8:11723234..11727095,9	MCF-7	breast:
33	chr8:11689387..11691686-chr8:11696731..11698715,2	K562	blood:
34	chr10:52384254..52384940-chr8:11659944..11660800,2	NB4	blood:
35	chr8:11647279..11650078-chr8:11653979..11656723,2	MCF-7	breast:
36	chr8:11625966..11628578-chr8:11704558..11706433,2	MCF-7	breast:
37	chr8:11629548..11632235-chr8:11633790..11635730,3	MCF-7	breast:
38	chr8:11636825..11638712-chr8:11641059..11643183,2	K562	blood:
39	chr8:11710201..11712259-chr8:11713212..11714755,2	MCF-7	breast:
40	chr8:11629053..11631703-chr8:11645453..11647397,2	K562	blood:
41	chr8:11658229..11662389-chr8:11662980..11669380,10	MCF-7	breast:
42	chr8:11662199..11664746-chr8:11796348..11798802,2	K562	blood:
43	chr8:11695667..11699183-chr8:11720606..11722768,3	K562	blood:
44	chr8:11659426..11661474-chr8:11724613..11726870,3	MCF-7	breast:
45	chr8:11629021..11631913-chr8:11640649..11643733,4	K562	blood:
46	chr8:11652587..11657894-chr8:11658127..11661459,7	K562	blood:
47	chr8:11624784..11628111-chr8:11660073..11663416,4	MCF-7	breast:
48	chr8:11625432..11628777-chr8:11664764..11667821,4	MCF-7	breast:
49	chr8:11657053..11659855-chr8:11661482..11664070,3	K562	blood:
50	chr8:11706164..11707709-chr8:11709253..11711783,2	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NEIL2-2	chr8:11660604-11660734	NONHSAT125087
2	lnc-NEIL2-1	chr8:11647514-11647895	NONHSAT125083
3	lnc-RP11-297N6.4.1-2	chr8:11703663-11703900	ENSG00000269899.1
4	lnc-FDFT1-1	chr8:11701603-11702070	expReg_chr8_457_+
5	lnc-NEIL2-2	chr8:11660814-11661009	NONHSAT125087
6	lnc-NEIL2-1	chr8:11647514-11647897	NONHSAT125082
7	lnc-RP11-297N6.4.1-1	chr8:11659431-11660021	NONHSAT125085
8	lnc-RP11-297N6.4.1-1	chr8:11655437-11655656	NONHSAT125085

No data

Variant related genes	Relation type
CTSB	TF binding region
ENSG00000255046	TF binding region
ENSG00000269899	TF binding region
SUB1P1	TF binding region
FDFT1	TF binding region
NEIL2	TF binding region
CTSB	CpG island
ENSG00000255046	CpG island
ENSG00000269899	CpG island
SUB1P1	CpG island
FDFT1	CpG island
NEIL2	CpG island
ENSG00000269899	chromatin interactions
ENSG00000136574	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000255144	chromatin interactions
ENSG00000066379	chromatin interactions
ENSG00000198964	chromatin interactions
ENSG00000112304	chromatin interactions
ENSG00000226200	chromatin interactions
ENSG00000227203	chromatin interactions
ENSG00000255046	chromatin interactions
ENSG00000111802	chromatin interactions
ENSG00000154328	chromatin interactions
ENSG00000204623	chromatin interactions
ENSG00000079459	chromatin interactions
ENSG00000110651	chromatin interactions
ENSG00000164733	chromatin interactions
ENSG00000255394	chromatin interactions

Extended variants
information (count: 7743 )
Associated
traits (count: 153 )

Variant overlapped rSNPs/rCNVs (count:7743 , 50 per page) page: 1 2 3 4 5 6 7 ... 155

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375081020	chr8:11623576-11623577	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs190031957	chr8:11623603-11623604	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs181202291	chr8:11623668-11623669	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs184629177	chr8:11623700-11623701	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs145520839	chr8:11623729-11623730	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs534303491	chr8:11623739-11623740	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs559354564	chr8:11623752-11623753	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs140274209	chr8:11623794-11623795	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs576720029	chr8:11623800-11623801	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs532119049	chr8:11623827-11623828	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs547808965	chr8:11623844-11623845	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs113143731	chr8:11623875-11623876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs145456707	chr8:11623878-11623879	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs804279	chr8:11623889-11623890	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs552305449	chr8:11623909-11623910	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs536988196	chr8:11623937-11623938	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs530972060	chr8:11623962-11623963	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs76348182	chr8:11623963-11623964	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs574347610	chr8:11623996-11623997	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs571337984	chr8:11624003-11624004	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs532275459	chr8:11624004-11624005	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs531690133	chr8:11624035-11624036	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs200145119	chr8:11624036-11624037	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs66651545	chr8:11624047-11624048	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs565722496	chr8:11624048-11624049	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs67123108	chr8:11624050-11624051	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs73207216	chr8:11624053-11624054	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs73663007	chr8:11624056-11624057	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs536814364	chr8:11624063-11624064	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs189245704	chr8:11624171-11624172	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs140999894	chr8:11624200-11624201	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs369368594	chr8:11624233-11624234	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs180768381	chr8:11624242-11624243	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552945524	chr8:11624266-11624267	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs574696131	chr8:11624269-11624270	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs542217348	chr8:11624276-11624277	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs563796279	chr8:11624285-11624286	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs558750081	chr8:11624302-11624303	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs531258671	chr8:11624312-11624313	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs546398989	chr8:11624330-11624331	Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs186453381	chr8:11624342-11624343	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs371787572	chr8:11624408-11624409	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs804278	chr8:11624413-11624414	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs34928882	chr8:11624416-11624417	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs555049112	chr8:11624424-11624425	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs141431644	chr8:11624429-11624430	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs376339933	chr8:11624456-11624457	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs529621617	chr8:11624458-11624459	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs34770907	chr8:11624465-11624466	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs548187959	chr8:11624484-11624485	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:153)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Gastric cancer	21811585	CNVD
Colorectal cancer	16774939	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cancer	20164919	CNVD
Gastric cancer	22315472	CNVD
Gastric cancer	17229543	CNVD
Disorders of sex development	22290220	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Osteosarcoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Honadal dysgenesis	21408189	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:5623 , 50 per page) page: 1 2 3 4 5 6 7 ... 113

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11615800-11626800	Weak transcription	Left Ventricle	heart
2	chr8:11617000-11626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:11617400-11626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:11617400-11626400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:11617400-11626800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:11618000-11626000	Weak transcription	Pancreas	Pancrea
7	chr8:11618000-11626800	Weak transcription	Fetal Intestine Large	intestine
8	chr8:11619600-11626800	Weak transcription	Gastric	stomach
9	chr8:11620400-11626600	Weak transcription	Right Ventricle	heart
10	chr8:11621200-11626600	Weak transcription	Fetal Intestine Small	intestine
11	chr8:11621600-11624800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:11622000-11623800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:11622000-11623800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:11622000-11623800	Enhancers	HSMM	muscle
15	chr8:11622400-11626800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:11622600-11623800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:11622600-11623800	Enhancers	NHEK	skin
18	chr8:11622800-11623600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:11622800-11623600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr8:11622800-11623600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr8:11622800-11623600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr8:11622800-11623600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:11622800-11623600	Enhancers	Ovary	ovary
24	chr8:11622800-11623600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr8:11622800-11623600	Enhancers	Stomach Mucosa	stomach
26	chr8:11622800-11623800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr8:11622800-11623800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:11622800-11623800	Enhancers	Fetal Heart	heart
29	chr8:11622800-11623800	Enhancers	HSMMtube	muscle
30	chr8:11622800-11624000	Enhancers	Primary B cells from peripheral blood	blood
31	chr8:11622800-11624000	Enhancers	HUVEC	blood vessel
32	chr8:11623000-11623600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:11623000-11623600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:11623000-11623600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:11623000-11623600	Enhancers	Adipose Nuclei	Adipose
36	chr8:11623000-11623600	Enhancers	Liver	Liver
37	chr8:11623000-11623600	Enhancers	Brain Angular Gyrus	brain
38	chr8:11623000-11623600	Enhancers	Brain Hippocampus Middle	brain
39	chr8:11623000-11623600	Enhancers	Fetal Muscle Leg	muscle
40	chr8:11623000-11623600	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr8:11623000-11623600	Enhancers	Dnd41	blood
42	chr8:11623000-11623800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:11623000-11623800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:11623000-11623800	Enhancers	Hela-S3	cervix
45	chr8:11623000-11624400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr8:11623200-11623600	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr8:11623200-11623600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr8:11623200-11623600	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr8:11623200-11623600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:11623200-11623600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links