Variant report

Variant	nsv1023871
Chromosome Location	chr5:37330018-37804744
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5041)
CpG islands
(count:2078)
Chromatin interactive
region (count:199)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5041 , 50 per page) page: 1 2 3 4 5 6 7 ... 101

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:37555087-37555396	K562	blood:	n/a	n/a
2	ARID3A	chr5:37371166-37371527	K562	blood:	n/a	chr5:37371175-37371187
3	ARID3A	chr5:37717456-37718839	HepG2	liver:	n/a	chr5:37718035-37718051
4	ARID3A	chr5:37566412-37566482	K562	blood:	n/a	n/a
5	ARID3A	chr5:37435813-37436000	K562	blood:	n/a	chr5:37435891-37435907
6	ARID3A	chr5:37435399-37435833	HepG2	liver:	n/a	n/a
7	ARID3A	chr5:37725466-37725597	HepG2	liver:	n/a	n/a
8	ARID3A	chr5:37758290-37758411	K562	blood:	n/a	n/a
9	ARID3A	chr5:37349046-37349675	HepG2	liver:	n/a	n/a
10	ARID3A	chr5:37424736-37424788	HepG2	liver:	n/a	n/a
11	ARID3A	chr5:37552742-37553918	K562	blood:	n/a	n/a
12	ARID3A	chr5:37723622-37723741	HepG2	liver:	n/a	n/a
13	ARID3A	chr5:37554224-37554305	K562	blood:	n/a	n/a
14	ARID3A	chr5:37787915-37788215	HepG2	liver:	n/a	n/a
15	ARID3A	chr5:37723608-37723756	K562	blood:	n/a	n/a
16	ARID3A	chr5:37561556-37561928	K562	blood:	n/a	n/a
17	ARID3A	chr5:37723042-37723269	HepG2	liver:	n/a	n/a
18	ARID3A	chr5:37576244-37577007	K562	blood:	n/a	chr5:37576689-37576705 chr5:37576688-37576704
19	ARID3A	chr5:37413045-37413386	HepG2	liver:	n/a	n/a
20	ARID3A	chr5:37379206-37379473	K562	blood:	n/a	n/a
21	ARID3A	chr5:37371072-37371329	HepG2	liver:	n/a	chr5:37371175-37371187
22	ARID3A	chr5:37412949-37413405	K562	blood:	n/a	n/a
23	ARID3A	chr5:37668578-37669026	HepG2	liver:	n/a	n/a
24	ATF1	chr5:37672268-37672700	K562	blood:	n/a	n/a
25	ATF1	chr5:37379197-37379483	K562	blood:	n/a	n/a
26	ATF1	chr5:37723031-37723344	K562	blood:	n/a	n/a
27	ATF1	chr5:37370938-37371803	K562	blood:	n/a	n/a
28	ATF1	chr5:37413139-37413402	K562	blood:	n/a	n/a
29	ATF1	chr5:37576224-37576625	K562	blood:	n/a	n/a
30	ATF1	chr5:37668620-37669142	K562	blood:	n/a	n/a
31	ATF1	chr5:37552974-37553744	K562	blood:	n/a	n/a
32	ATF1	chr5:37614336-37614416	K562	blood:	n/a	n/a
33	ATF2	chr5:37370951-37371687	GM12878	blood:	n/a	n/a
34	ATF2	chr5:37738148-37738641	GM12878	blood:	n/a	n/a
35	ATF2	chr5:37370963-37371677	H1-hESC	embryonic stem cell:	n/a	n/a
36	ATF2	chr5:37722807-37723371	GM12878	blood:	n/a	n/a
37	ATF2	chr5:37672199-37672626	GM12878	blood:	n/a	n/a
38	ATF2	chr5:37379198-37379480	H1-hESC	embryonic stem cell:	n/a	n/a
39	ATF2	chr5:37370933-37371743	GM12878	blood:	n/a	n/a
40	ATF2	chr5:37721531-37722125	GM12878	blood:	n/a	n/a
41	ATF2	chr5:37722812-37723380	GM12878	blood:	n/a	n/a
42	ATF2	chr5:37738072-37738628	GM12878	blood:	n/a	n/a
43	ATF2	chr5:37379058-37379502	GM12878	blood:	n/a	n/a
44	ATF2	chr5:37370974-37371643	H1-hESC	embryonic stem cell:	n/a	n/a
45	ATF3	chr5:37413096-37413476	K562	blood:	n/a	n/a
46	ATF3	chr5:37668466-37669039	A549	lung:	n/a	n/a
47	ATF3	chr5:37371024-37371385	H1-hESC	embryonic stem cell:	n/a	chr5:37371209-37371223 chr5:37371172-37371181
48	ATF3	chr5:37668523-37668997	K562	blood:	n/a	n/a
49	ATF3	chr5:37668528-37669122	HCT-116	colon:	n/a	n/a
50	ATF3	chr5:37379108-37379491	K562	blood:	n/a	n/a

(count:2078 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:37772265-37772315	HMEC	breast:	n/a
2	chr5:37371047-37371097	ProgFib	skin:	n/a
3	chr5:37721782-37721832	Caco-2	colon:	n/a
4	chr5:37371053-37371103	SKMC	muscle:	n/a
5	chr5:37772265-37772315	HMEC	breast:	n/a
6	chr5:37371047-37371097	ProgFib	skin:	n/a
7	chr5:37721782-37721832	Caco-2	colon:	n/a
8	chr5:37371053-37371103	SKMC	muscle:	n/a
9	chr5:37371053-37371103	RPTEC	kidney:	n/a
10	chr5:37721782-37721832	GM12878	blood:	n/a
11	chr5:37737626-37737676	HCM	heart:	n/a
12	chr5:37371179-37371229	GM06990	blood:	n/a
13	chr5:37371056-37371106	GM06990	blood:	n/a
14	chr5:37371082-37371132	HRE	kidney:	n/a
15	chr5:37666865-37666915	HIPEpiC	eye:	n/a
16	chr5:37370947-37370997	SK-N-MC	brain:	n/a
17	chr5:37379272-37379322	U87	brain:	n/a
18	chr5:37379396-37379446	PrEC	prostate:	n/a
19	chr5:37484025-37484075	NH-A	brain:	n/a
20	chr5:37379822-37379872	HRPEpiC	eye:	n/a
21	chr5:37721782-37721832	A549	lung:	n/a
22	chr5:37484025-37484075	IMR90	lung:	fetal
23	chr5:37379822-37379872	ECC-1	luminal epithelium:	n/a
24	chr5:37371053-37371103	NH-A	brain:	n/a
25	chr5:37370947-37370997	MCF10A-Er-Src	breast:	n/a
26	chr5:37379272-37379322	RPTEC	kidney:	n/a
27	chr5:37370967-37371017	MCF10A-Er-Src	breast:	n/a
28	chr5:37666865-37666915	HCM	heart:	n/a
29	chr5:37370880-37370930	HCT-116	colon:	n/a
30	chr5:37723683-37723733	BE2_C	brain:	n/a
31	chr5:37737626-37737676	AG09319	gingival:	n/a
32	chr5:37379272-37379322	ovcar-3	ovarian:	n/a
33	chr5:37371192-37371242	MCF10A-Er-Src	breast:	n/a
34	chr5:37371082-37371132	U87	brain:	n/a
35	chr5:37379272-37379322	SAEC	small airway:	n/a
36	chr5:37370947-37370997	AG04449	skin:	fetal
37	chr5:37379396-37379446	LNCaP	prostate:	n/a
38	chr5:37378050-37378100	CMK	blood:	n/a
39	chr5:37484025-37484075	AG04450	lung:	fetal
40	chr5:37379461-37379511	T-47D	breast:	n/a
41	chr5:37379358-37379408	PANC-1	pancreas:	n/a
42	chr5:37379269-37379319	PrEC	prostate:	n/a
43	chr5:37371179-37371229	NHBE	bronchial:	n/a
44	chr5:37382801-37382851	HIPEpiC	eye:	n/a
45	chr5:37371053-37371103	HNPCEpiC	eye:	n/a
46	chr5:37723683-37723733	MCF10A-Er-Src	breast:	n/a
47	chr5:37371082-37371132	MCF10A-Er-Src	breast:	n/a
48	chr5:37378360-37378410	HCT-116	colon:	n/a
49	chr5:37382801-37382851	SAEC	small airway:	n/a
50	chr5:37371555-37371605	PFSK-1	brain:	n/a

(count:199 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr5:37569124..37569718-chr8:118852447..118853416,2	MCF-7	breast:
2	chr5:37576360..37578315-chr5:37581420..37583139,2	K562	blood:
3	chr5:37787494..37789830-chr5:37791340..37793727,2	K562	blood:
4	chr5:37662824..37665076-chr5:37668148..37670201,3	MCF-7	breast:
5	chr15:94515130..94515844-chr5:37350902..37351467,2	MCF-7	breast:
6	chr5:37412766..37413683-chr5:37757982..37759001,7	MCF-7	breast:
7	chr5:37578232..37579991-chr5:37581584..37583169,2	MCF-7	breast:
8	chr5:37370037..37373489-chr5:37377973..37381470,5	K562	blood:
9	chr5:37363225..37366000-chr5:37368563..37371283,3	K562	blood:
10	chr5:37397085..37398718-chr5:37402352..37404618,2	MCF-7	breast:
11	chr1:117601635..117602147-chr5:37379314..37380058,2	Hela-S3	cervix:
12	chr5:37341337..37344195-chr5:37360002..37362809,2	K562	blood:
13	chr5:37412852..37413708-chr5:37554717..37555628,3	MCF-7	breast:
14	chr5:37565296..37570234-chr5:37571928..37578079,8	K562	blood:
15	chr5:37578232..37579991-chr5:37581584..37583169,2	MCF-7	breast:
16	chr5:37353747..37356748-chr5:37369994..37371965,3	K562	blood:
17	chr5:37658934..37661849-chr5:37667178..37669216,3	MCF-7	breast:
18	chr5:37659630..37663695-chr5:37665450..37669812,5	K562	blood:
19	chr5:37351031..37353005-chr5:37354563..37356913,2	K562	blood:
20	chr5:37713167..37714874-chr5:37723361..37725833,2	K562	blood:
21	chr5:37395673..37397370-chr5:37410862..37413241,2	MCF-7	breast:
22	chr5:37766392..37768075-chr5:37772148..37773863,2	K562	blood:
23	chr5:37536707..37538331-chr5:37538401..37541156,2	K562	blood:
24	chr14:24564579..24565089-chr5:37371292..37372060,2	NB4	blood:
25	chr5:37569701..37572288-chr5:37579867..37582083,2	MCF-7	breast:
26	chr12:7052910..7053902-chr5:37371084..37371594,2	Hela-S3	cervix:
27	chr5:37402668..37405027-chr5:37408741..37410429,2	K562	blood:
28	chr5:37379216..37379885-chr6:58287233..58287739,2	Hela-S3	cervix:
29	chr5:37559780..37563110-chr5:37563759..37567373,3	K562	blood:
30	chr5:37766392..37768075-chr5:37772148..37773863,2	K562	blood:
31	chr5:37664491..37667181-chr5:37703176..37705396,2	MCF-7	breast:
32	chr5:37412783..37413436-chr5:37723453..37724202,2	K562	blood:
33	chr10:132633168..132634098-chr5:37613234..37613734,2	NB4	blood:
34	chr5:37438128..37441611-chr5:37451601..37454118,3	K562	blood:
35	chr5:37438128..37441611-chr5:37451601..37454118,3	K562	blood:
36	chr5:37630392..37632021-chr5:37637856..37640438,2	MCF-7	breast:
37	chr5:37488881..37490858-chr5:37567347..37569058,2	K562	blood:
38	chr5:37509914..37511896-chr5:37518755..37521412,2	K562	blood:
39	chr5:37329127..37329843-chr5:37340391..37341109,2	Hela-S3	cervix:
40	chr5:37413098..37413750-chr5:37837537..37838115,2	MCF-7	breast:
41	chr5:37574620..37576476-chr5:37584938..37587005,2	K562	blood:
42	chr5:37550784..37553523-chr5:37560304..37561961,2	MCF-7	breast:
43	chr5:37536707..37538331-chr5:37538401..37541156,2	K562	blood:
44	chr5:37543508..37545182-chr5:37552537..37554107,2	K562	blood:
45	chr5:37553408..37554969-chr5:37565315..37567049,2	K562	blood:
46	chr5:37583782..37585545-chr5:37586859..37589248,2	K562	blood:
47	chr5:37412766..37413683-chr5:37757982..37759001,7	MCF-7	breast:
48	chr5:37389025..37391631-chr5:37392336..37394905,2	K562	blood:
49	chr5:37361813..37365556-chr5:37369411..37373994,6	K562	blood:
50	chr5:37299270..37301087-chr5:37332798..37335148,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NIPBL-7	chr5:37381704-37381911	NONHSAT101065
2	lnc-WDR70-4	chr5:37377151-37377385	NONHSAT101062
3	lnc-NIPBL-7	chr5:37379404-37379494	NONHSAT101065
4	lnc-NUP155-5	chr5:37505790-37506959	NONHSAT101066
5	lnc-WDR70-4	chr5:37377986-37378073	NONHSAT101062
6	lnc-NIPBL-7	chr5:37379591-37379656	NONHSAT101065

No data

Variant related genes	Relation type
RNU6-1190P	TF binding region
ENSG00000250455	TF binding region
WDR70	TF binding region
ENSG00000248216	TF binding region
ENSG00000238335	TF binding region
RNU6-484P	TF binding region
NUP155	TF binding region
RNU6-1190P	CpG island
ENSG00000250455	CpG island
WDR70	CpG island
ENSG00000248216	CpG island
ENSG00000238335	CpG island
RNU6-484P	CpG island
NUP155	CpG island
ENSG00000113569	chromatin interactions
ENSG00000250455	chromatin interactions
ENSG00000199347	chromatin interactions
ENSG00000161847	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000248587	chromatin interactions
ENSG00000215190	chromatin interactions
ENSG00000164190	chromatin interactions
ENSG00000104549	chromatin interactions
ENSG00000236137	chromatin interactions
ENSG00000238923	chromatin interactions
ENSG00000222743	chromatin interactions
ENSG00000154222	chromatin interactions
ENSG00000253513	chromatin interactions
ENSG00000173209	chromatin interactions
ENSG00000272173	chromatin interactions
ENSG00000183666	chromatin interactions
ENSG00000082068	chromatin interactions
ENSG00000145741	chromatin interactions
ENSG00000251880	chromatin interactions

Extended variants
information (count: 17468 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:17468 , 50 per page) page: 1 2 3 4 5 6 7 ... 350

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548384411	chr5:37330023-37330024	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs142912607	chr5:37330026-37330027	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs151102751	chr5:37330028-37330029	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs140986433	chr5:37330046-37330047	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs571170300	chr5:37330070-37330071	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs371020359	chr5:37330095-37330096	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs373573040	chr5:37330112-37330113	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs184500356	chr5:37330120-37330121	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs111945721	chr5:37330130-37330131	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs575119923	chr5:37330153-37330154	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs370258997	chr5:37330196-37330197	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs373000659	chr5:37330205-37330206	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs150693015	chr5:37330226-37330227	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs149788309	chr5:37330270-37330271	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs146818549	chr5:37330290-37330291	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs547568603	chr5:37330338-37330339	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs16903584	chr5:37330339-37330340	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs189316850	chr5:37330345-37330346	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs111677785	chr5:37330355-37330356	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs576732418	chr5:37330382-37330383	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs544177673	chr5:37330455-37330456	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs16903585	chr5:37330472-37330473	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs16903586	chr5:37330480-37330481	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs530028039	chr5:37330486-37330487	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs369449800	chr5:37330560-37330561	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs181961359	chr5:37330589-37330590	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs77977024	chr5:37330604-37330605	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs140479036	chr5:37330625-37330626	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs571053345	chr5:37330664-37330665	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs538577646	chr5:37330690-37330691	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs185972089	chr5:37330734-37330735	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs538909568	chr5:37330741-37330742	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs568860923	chr5:37330757-37330758	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs377706369	chr5:37330766-37330767	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs576511756	chr5:37330830-37330831	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs376477857	chr5:37330831-37330832	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs188980080	chr5:37330845-37330846	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs565176736	chr5:37330882-37330883	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs145645030	chr5:37330901-37330902	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs533598579	chr5:37330923-37330924	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs558379811	chr5:37330924-37330925	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs576620645	chr5:37330938-37330939	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs16903587	chr5:37330942-37330943	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs541179536	chr5:37330950-37330951	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs182112392	chr5:37330989-37330990	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs372694154	chr5:37331016-37331017	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs574647277	chr5:37331018-37331019	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs541874973	chr5:37331022-37331023	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs446078	chr5:37331025-37331026	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs146512218	chr5:37331042-37331043	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Myofibroblastic sarcoma	19369631	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Intellectual disability	22102821	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Non-small cell lung cancer	19010865	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Medulloblastoma	19270706	CNVD
Breast cancer	19553991	CNVD
Lung cancer	19553991	CNVD
Melanoma	19553991	CNVD
Ovarian cancer	19553991	CNVD
Prostate cancer	19553991	CNVD
Non-small cell lung cancer	17156491	CNVD
Breast cancer	17133270	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Breast cancer	17393978	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Lung cancer	19153074	CNVD
Cornelia de Lange syndrome	21085971	CNVD
Autism	21701786	CNVD
Cervical cancer	16585170	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Autism	22549408	CNVD
Schizophrenia	23813976	CNVD
Schizophrenia	21346763	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19212409	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Breast cancer	21990379	CNVD
Schizophrenia	19197363	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:7120 , 50 per page) page: 1 2 3 4 5 6 7 ... 143

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37289000-37369200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:37296400-37365400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:37296400-37369000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:37296800-37353200	Strong transcription	Fetal Thymus	thymus
5	chr5:37296800-37358400	Strong transcription	Placenta	Placenta
6	chr5:37296800-37358600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:37296800-37358600	Strong transcription	Liver	Liver
8	chr5:37296800-37359000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:37296800-37359800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:37296800-37359800	Strong transcription	Fetal Intestine Large	intestine
11	chr5:37296800-37360000	Strong transcription	Adipose Nuclei	Adipose
12	chr5:37296800-37364600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:37296800-37364600	Strong transcription	Dnd41	blood
14	chr5:37296800-37365600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:37297000-37333200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:37297000-37364200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:37297000-37365400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:37297200-37330600	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:37297200-37358800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:37297400-37334400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:37297400-37364600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr5:37297800-37359800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:37298600-37337800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:37307800-37368600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:37308800-37334800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:37308800-37334800	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:37308800-37335000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:37308800-37337800	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr5:37308800-37353200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr5:37308800-37365400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr5:37311600-37351400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:37311600-37365400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:37311600-37365400	Strong transcription	Fetal Muscle Leg	muscle
34	chr5:37312000-37337600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr5:37313200-37333400	Weak transcription	Fetal Brain Male	brain
36	chr5:37317600-37339800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:37318000-37330800	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr5:37318400-37359000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:37319000-37358400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr5:37319200-37337400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:37319200-37364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:37319400-37365400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr5:37319600-37347800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr5:37319800-37349200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr5:37320000-37334600	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr5:37321200-37337400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr5:37321600-37359600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr5:37321800-37335400	Strong transcription	Primary B cells from peripheral blood	blood
49	chr5:37322000-37334800	Strong transcription	Left Ventricle	heart
50	chr5:37322200-37334800	Strong transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links