Variant report

Variant	nsv1024330
Chromosome Location	chr9:26295612-26315226
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 809 )
Associated
traits (count: 119 )

Variant overlapped rSNPs/rCNVs (count:809 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552773400	chr9:26295614-26295615	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs571631747	chr9:26295616-26295617	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs139729564	chr9:26295626-26295627	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs531272128	chr9:26295645-26295646	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs575595676	chr9:26295675-26295676	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs543302191	chr9:26295683-26295684	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs555316519	chr9:26295722-26295723	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs68065694	chr9:26295723-26295724	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs398113362	chr9:26295727-26295728	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs571738859	chr9:26295744-26295745	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs573446359	chr9:26295749-26295750	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs540808096	chr9:26295751-26295752	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs143258465	chr9:26295780-26295781	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs532877914	chr9:26295815-26295816	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs113716845	chr9:26295826-26295827	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs545137610	chr9:26295830-26295831	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs684738	chr9:26295831-26295832	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs530538775	chr9:26295847-26295848	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs684763	chr9:26295851-26295852	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs193118384	chr9:26295863-26295864	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs528401930	chr9:26295893-26295894	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs546378033	chr9:26295944-26295945	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs377300970	chr9:26296010-26296011	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs571464186	chr9:26296012-26296013	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs371105890	chr9:26296029-26296030	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs534138300	chr9:26296041-26296042	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs548863830	chr9:26296044-26296045	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs538709884	chr9:26296068-26296069	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs537864407	chr9:26296162-26296163	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs10967293	chr9:26296172-26296173	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs150734163	chr9:26296183-26296184	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs111885364	chr9:26296226-26296227	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs371210050	chr9:26296231-26296232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs555030458	chr9:26296239-26296240	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs537615429	chr9:26296252-26296253	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs139094476	chr9:26296256-26296257	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs589340	chr9:26296319-26296320	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs558882758	chr9:26296329-26296330	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs589411	chr9:26296370-26296371	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs544739701	chr9:26296372-26296373	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs538263833	chr9:26296377-26296378	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs563414836	chr9:26296451-26296452	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs185322167	chr9:26296471-26296472	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs542197992	chr9:26296479-26296480	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs112843118	chr9:26296521-26296522	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs560587582	chr9:26296619-26296620	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs528365203	chr9:26296631-26296632	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs546490688	chr9:26296645-26296646	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs376956390	chr9:26296671-26296672	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs74178339	chr9:26296692-26296693	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:119)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Glioblastoma multiforme	21525872	CNVD

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26293200-26296800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:26294000-26309600	Weak transcription	Hela-S3	cervix
3	chr9:26294200-26303000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:26294200-26303000	Weak transcription	NHDF-Ad	bronchial
5	chr9:26294600-26302600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:26297800-26298000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr9:26298200-26299400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:26299400-26301400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr9:26301400-26302800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:26301800-26304400	Enhancers	HUVEC	blood vessel
11	chr9:26302600-26303000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:26302600-26303600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:26302800-26303600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr9:26303000-26303400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:26303000-26303600	Enhancers	NHDF-Ad	bronchial
16	chr9:26303200-26304800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:26303400-26309600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:26303600-26306600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:26303600-26307800	Weak transcription	NHDF-Ad	bronchial
20	chr9:26303600-26308200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:26304400-26308000	Weak transcription	HUVEC	blood vessel
22	chr9:26304800-26310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:26306600-26306800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr9:26306800-26309600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr9:26307800-26308400	Enhancers	NHDF-Ad	bronchial
26	chr9:26308000-26310600	Enhancers	HUVEC	blood vessel
27	chr9:26308200-26308600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:26308400-26308600	Weak transcription	NHDF-Ad	bronchial
29	chr9:26308600-26309000	Enhancers	NHDF-Ad	bronchial
30	chr9:26308600-26310000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:26309000-26309800	Weak transcription	NHDF-Ad	bronchial
32	chr9:26309600-26310400	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr9:26309600-26310400	Enhancers	Hela-S3	cervix
34	chr9:26309600-26310800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:26309800-26310600	Enhancers	NHDF-Ad	bronchial
36	chr9:26310000-26310400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:26310000-26311000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:26310200-26310800	Enhancers	Fetal Lung	lung
39	chr9:26310400-26315200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr9:26315200-26315800	Enhancers	Pancreatic Islets	Pancreatic Islet

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