Variant report

Variant	nsv1024558
Chromosome Location	chr6:64876263-65000031
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:64990450..64991143-chr6:65442394..65443437,5	MCF-7	breast:
2	chr6:64931220..64933787-chr6:64937129..64939754,2	K562	blood:
3	chr20:46132660..46133356-chr6:64886601..64887388,2	MCF-7	breast:
4	chr6:64898967..64901155-chr6:64903465..64905780,2	K562	blood:
5	chr6:64898967..64901155-chr6:64903465..64905780,2	K562	blood:
6	chr6:64931220..64933787-chr6:64937129..64939754,2	K562	blood:
7	chr6:64968428..64970654-chr6:64971597..64973561,2	MCF-7	breast:
8	chr6:64968428..64970654-chr6:64971597..64973561,2	MCF-7	breast:
9	chr6:64825086..64826621-chr6:64878332..64879949,2	K562	blood:
10	chr12:81340169..81340734-chr6:64895212..64895734,2	MCF-7	breast:

No data

Extended variants
information (count: 2137 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:2137 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577611358	chr6:64879604-64879605	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs77836732	chr6:64879607-64879608	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs553404237	chr6:64879623-64879624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs74940307	chr6:64879631-64879632	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs75829614	chr6:64879642-64879643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs549100592	chr6:64879656-64879657	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs200806713	chr6:64879676-64879677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs143506115	chr6:64879683-64879684	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs530948679	chr6:64879724-64879725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs545788897	chr6:64879788-64879789	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs373981013	chr6:64879815-64879816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs142699770	chr6:64879816-64879817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs528115261	chr6:64879828-64879829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs528353028	chr6:64879848-64879849	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs546455941	chr6:64879868-64879869	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs116064153	chr6:64879877-64879878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs529038713	chr6:64879878-64879879	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs571226474	chr6:64879884-64879885	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs538408494	chr6:64879919-64879920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs550512274	chr6:64879972-64879973	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs147314988	chr6:64879992-64879993	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs539591843	chr6:64880047-64880048	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs148803181	chr6:64880048-64880049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs566510339	chr6:64880050-64880051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs373135794	chr6:64880052-64880053	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs533790541	chr6:64880071-64880072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs553582506	chr6:64880078-64880079	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs75371588	chr6:64880083-64880084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs536036180	chr6:64880091-64880092	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs143645219	chr6:64880128-64880129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs11756096	chr6:64880145-64880146	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs186006384	chr6:64880187-64880188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs545926421	chr6:64880200-64880201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs566484930	chr6:64880203-64880204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs564256623	chr6:64880222-64880223	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs189704320	chr6:64880240-64880241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs115492436	chr6:64880250-64880251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs561977452	chr6:64880259-64880260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs529216995	chr6:64880290-64880291	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs550751630	chr6:64880291-64880292	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs562571709	chr6:64880311-64880312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs533046142	chr6:64880344-64880345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs551471200	chr6:64880346-64880347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs566572945	chr6:64880411-64880412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs533726203	chr6:64880440-64880441	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs116344252	chr6:64880442-64880443	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs183459224	chr6:64880494-64880495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs536341257	chr6:64880501-64880502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs535799986	chr6:64880515-64880516	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs141591236	chr6:64880593-64880594	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Bipolar disorder	19114987	CNVD
Hodgkin''s lymphoma	18641027	CNVD

Chromatin state (count:160 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64879600-64880600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:64879800-64880600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:64880200-64881000	Enhancers	Fetal Lung	lung
4	chr6:64880600-64885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:64880600-64885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:64885200-64885800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:64885200-64886000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:64895800-64896400	Enhancers	Fetal Lung	lung
9	chr6:64896400-64897000	Flanking Active TSS	Fetal Lung	lung
10	chr6:64897000-64897800	Enhancers	Fetal Lung	lung
11	chr6:64920600-64921000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:64927400-64927800	Enhancers	GM12878-XiMat	blood
13	chr6:64927600-64928600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:64927600-64928800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:64927600-64928800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:64927600-64929000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:64927600-64929000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:64927800-64928200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:64927800-64928200	Enhancers	A549	lung
20	chr6:64927800-64928200	Flanking Active TSS	GM12878-XiMat	blood
21	chr6:64927800-64929000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:64928000-64928400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:64928000-64928600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:64928000-64928800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:64928200-64929200	Enhancers	GM12878-XiMat	blood
26	chr6:64929000-64930800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:64929000-64943800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:64930800-64931400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:64931400-64931800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:64931800-64932000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:64932000-64934000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:64934000-64935400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:64934200-64935800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:64934800-64935000	Enhancers	Fetal Brain Female	brain
35	chr6:64934800-64935200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:64934800-64935200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:64934800-64935400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:64935000-64940400	Weak transcription	Fetal Brain Female	brain
39	chr6:64935800-64939600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:64939400-64939800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:64939400-64939800	Enhancers	Fetal Lung	lung
42	chr6:64939400-64940000	Enhancers	Fetal Heart	heart
43	chr6:64939600-64941000	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr6:64939800-64940000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:64940000-64940600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:64940400-64940600	Enhancers	Fetal Brain Female	brain
47	chr6:64940600-64940800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:64940600-64943200	Weak transcription	Fetal Brain Female	brain
49	chr6:64943800-64944000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:64943800-64944000	Enhancers	Fetal Brain Female	brain

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