Variant report

Variant	nsv1024699
Chromosome Location	chr9:24500443-24517670
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 483 )
Associated
traits (count: 145 )

Variant overlapped rSNPs/rCNVs (count:483 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528797084	chr9:24500454-24500455	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs367743640	chr9:24500497-24500498	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs58794537	chr9:24500530-24500531	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs140622100	chr9:24500535-24500536	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs186655709	chr9:24500536-24500537	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs189394034	chr9:24500548-24500549	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs371513624	chr9:24500563-24500564	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs368930780	chr9:24500585-24500586	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539630686	chr9:24500605-24500606	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs77486537	chr9:24500616-24500617	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs566656188	chr9:24500622-24500623	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs535777705	chr9:24500698-24500699	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs555683437	chr9:24500699-24500700	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs148149603	chr9:24500719-24500720	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs544198524	chr9:24500779-24500780	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs557835902	chr9:24500793-24500794	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs180952278	chr9:24500802-24500803	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs375787392	chr9:24500807-24500808	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs185287467	chr9:24500872-24500873	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs567349278	chr9:24500883-24500884	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs577622725	chr9:24500914-24500915	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs537846895	chr9:24500935-24500936	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs191225700	chr9:24500972-24500973	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs541503645	chr9:24500998-24500999	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546683896	chr9:24501055-24501056	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs528638505	chr9:24501070-24501071	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs183294116	chr9:24501074-24501075	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs141791237	chr9:24501075-24501076	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs374864639	chr9:24501078-24501079	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs112144787	chr9:24501096-24501097	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs530819732	chr9:24501120-24501121	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs376322169	chr9:24501139-24501140	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs550661924	chr9:24501151-24501152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs11402879	chr9:24501155-24501156	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs570816068	chr9:24501177-24501178	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs539075438	chr9:24501183-24501184	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs533314050	chr9:24501192-24501193	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs558004223	chr9:24501246-24501247	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs547050143	chr9:24501248-24501249	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs141039183	chr9:24501331-24501332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs535608921	chr9:24501337-24501338	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs555721922	chr9:24501359-24501360	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs569125385	chr9:24501377-24501378	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs537847376	chr9:24501395-24501396	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs557506871	chr9:24501407-24501408	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs570900431	chr9:24501408-24501409	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs577561799	chr9:24501429-24501430	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs539979756	chr9:24501455-24501456	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs553798658	chr9:24501471-24501472	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs112452795	chr9:24501509-24501510	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:145)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24495000-24502200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:24495800-24504200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:24496000-24501000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:24497200-24502400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:24497600-24502600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:24498000-24502600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:24499000-24503400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:24499200-24501200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:24499400-24502000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:24499400-24502200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:24499400-24502400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:24499600-24500600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:24499600-24500800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr9:24499800-24501400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:24500000-24502000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:24500600-24501800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:24500800-24501200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr9:24501000-24502000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:24501200-24501600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:24501200-24502600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:24501400-24503200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:24501600-24503200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr9:24501800-24502400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr9:24502000-24502200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr9:24502000-24503000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:24502000-24503200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:24502200-24502400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr9:24502200-24502400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr9:24502200-24503200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:24502400-24502600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr9:24502400-24502600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr9:24502400-24502800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr9:24502400-24503000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr9:24502400-24503000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:24502600-24503000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:24502600-24503200	Enhancers	H9 Cell Line	embryonic stem cell
37	chr9:24502600-24503800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr9:24502800-24503000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr9:24502800-24503200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr9:24503000-24506000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:24503000-24509800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr9:24503200-24503800	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr9:24503200-24504400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:24503200-24509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:24503200-24510000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr9:24503400-24504800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr9:24504600-24504800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:24504800-24505000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr9:24506000-24506200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:24509000-24510800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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