Variant report

Variant	nsv1024737
Chromosome Location	chr7:53466013-53496123
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:53473728..53475869-chr7:53482133..53483752,2	K562	blood:
2	chr20:52720034..52720613-chr7:53479832..53480332,2	MCF-7	breast:
3	chr7:53473728..53475869-chr7:53482133..53483752,2	K562	blood:
4	chr7:53480788..53483198-chr7:53496726..53498453,2	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEC61G-7	chr7:53466103-53466198	XLOC_006444
2	lnc-SEC61G-7	chr7:53486490-53486506	NONHSAT120627
3	lnc-SEC61G-7	chr7:53466103-53466276	NONHSAT120628
4	lnc-SEC61G-7	chr7:53484018-53484072	NONHSAT120633
5	lnc-SEC61G-7	chr7:53486490-53486585	NONHSAT120632
6	lnc-SEC61G-7	chr7:53486490-53486571	XLOC_006444
7	lnc-SEC61G-7	chr7:53466102-53466198	NONHSAT120635
8	lnc-SEC61G-7	chr7:53466103-53466196	NONHSAT120634
9	lnc-SEC61G-7	chr7:53466103-53466322	NONHSAT120630
10	lnc-SEC61G-7	chr7:53486490-53486578	NONHSAT120631
11	lnc-SEC61G-7	chr7:53484018-53484120	NONHSAT120626

No data

Variant related genes	Relation type
CNOT6	miRNA target sites
MEIS1	miRNA target sites

Extended variants
information (count: 668 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:668 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182313617	chr7:53466023-53466024	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs148205209	chr7:53466029-53466030	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs79279923	chr7:53466051-53466052	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs551582262	chr7:53466066-53466067	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs115606113	chr7:53466125-53466126	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
6	rs184291098	chr7:53466134-53466135	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
7	rs549307908	chr7:53466138-53466139	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
8	rs374372669	chr7:53466151-53466152	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
9	rs73363610	chr7:53466198-53466199	Weak transcription Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs79245787	chr7:53466212-53466213	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
11	rs115942668	chr7:53466250-53466251	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
12	rs140288657	chr7:53466263-53466264	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
13	rs554781035	chr7:53466272-53466273	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
14	rs145352434	chr7:53466279-53466280	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
15	rs576362875	chr7:53466280-53466281	Weak transcription Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
16	rs372618153	chr7:53466332-53466333	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs569797586	chr7:53466375-53466376	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs537330293	chr7:53466404-53466405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs377628032	chr7:53466433-53466434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs573938300	chr7:53466468-53466469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs375586134	chr7:53466517-53466518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs571967563	chr7:53466567-53466568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77833592	chr7:53466619-53466620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs578053634	chr7:53466625-53466626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs111802640	chr7:53466667-53466668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs117355192	chr7:53466673-53466674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs76064574	chr7:53466677-53466678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549244675	chr7:53466696-53466697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs561659549	chr7:53466705-53466706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs528847668	chr7:53466721-53466722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs577134696	chr7:53466736-53466737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs189194357	chr7:53466764-53466765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs137979722	chr7:53466766-53466767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs55975759	chr7:53466772-53466773	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs374464504	chr7:53466826-53466827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs569860497	chr7:53466832-53466833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs537279371	chr7:53466839-53466840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs555341665	chr7:53466845-53466846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs567575326	chr7:53466857-53466858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs150580888	chr7:53466859-53466860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574826376	chr7:53466889-53466890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375311677	chr7:53466912-53466913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs553341661	chr7:53466917-53466918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs577657356	chr7:53466927-53466928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs545095572	chr7:53466939-53466940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs78956267	chr7:53466942-53466943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs575416733	chr7:53466971-53466972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113513248	chr7:53466975-53466976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs141749488	chr7:53467005-53467006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs149333171	chr7:53467047-53467048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Biliary cancer	19435499	CNVD
Wilms tumour	21544195	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	22495311	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastric cancer	24379144	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Non-small cell lung cancer	17643093	CNVD
Ovarian cancer	18182111	CNVD
Colorectal cancer	16272173	CNVD
Glioblastoma multiforme	17369134	CNVD
Barrett''s esophagus	18559552	CNVD
head and neck squamous cell carcinoma	16943533	CNVD
Anaplastic thyroid cancer	17079354	CNVD
Basal-like breast cancer	17875215	CNVD
Colorectal cancer	16882699	CNVD
Colorectal cancer	18794099	CNVD
Gastrointestinal stromal cancer	17643098	CNVD
Lung cancer	18381415	CNVD
Metastatic colorectal cancer	17664472	CNVD
Non-small cell lung cancer	19255323	CNVD
Non-small cell lung cancer	17673923	CNVD
Non-small cell lung cancer	17975165	CNVD
Non-small cell lung cancer	19622585	CNVD
Ovarian cancer	16607561	CNVD
Squamous cell cancer	19670535	CNVD
head and neck squamous cell carcinoma	16818711	CNVD
small cell lung cancer	18829487	CNVD
Breast cancer	17661082	CNVD
Adenocarcinoma	19260752	CNVD
Esophageal cancer	16575012	CNVD
Lung adenocarcinoma	19138956	CNVD
Lung adenocarcinoma	18379350	CNVD
Lung adenocarcinoma	18258923	CNVD
Lung cancer	19138956	CNVD
Lung cancer	18379350	CNVD
Lung cancer	18258923	CNVD
Non-small cell lung cancer	18304967	CNVD
Non-small cell lung cancer	19451690	CNVD
Non-small cell lung cancer	19260752	CNVD
Non-small cell lung cancer	17079354	CNVD
Non-small cell lung cancer	18559607	CNVD
Rectal cancer	19506820	CNVD
Triple-negative breast cancer	18950515	CNVD
head and neck squamous cell carcinoma	18813952	CNVD
Non-small cell lung cancer	17504988	CNVD
Non-small cell lung cancer	16943533	CNVD
Non-small cell lung cancer	18509184	CNVD
head and neck squamous cell carcinoma	17538160	CNVD
Colorectal cancer	19712476	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Lung cancer	19671679	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
small cell lung cancer	20016488	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Cognitive impairment	21505072	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53465600-53466400	Active TSS	Fetal Kidney	kidney
2	chr7:53465800-53468000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:53468000-53468200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:53481600-53481800	Enhancers	Liver	Liver
5	chr7:53483200-53483400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:53483400-53485000	Enhancers	Liver	Liver
7	chr7:53483400-53485400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:53484800-53486600	Active TSS	Fetal Kidney	kidney
9	chr7:53485000-53486600	Flanking Active TSS	Liver	Liver
10	chr7:53485400-53486000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:53486000-53489400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:53486600-53487000	Enhancers	Liver	Liver
13	chr7:53486600-53489800	Weak transcription	Fetal Kidney	kidney
14	chr7:53487000-53487200	Flanking Active TSS	Liver	Liver
15	chr7:53487200-53489200	Enhancers	Liver	Liver
16	chr7:53488400-53489600	Enhancers	Placenta	Placenta
17	chr7:53489200-53493800	Weak transcription	Liver	Liver
18	chr7:53489400-53489600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:53489800-53490400	Enhancers	Fetal Kidney	kidney
20	chr7:53493800-53494400	Active TSS	Liver	Liver
21	chr7:53493800-53494400	Active TSS	Brain Cingulate Gyrus	brain
22	chr7:53493800-53494400	Active TSS	Hela-S3	cervix
23	chr7:53494000-53494400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:53494000-53494400	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr7:53494000-53494600	Active TSS	Brain Anterior Caudate	brain
26	chr7:53494000-53494600	Active TSS	Brain Hippocampus Middle	brain
27	chr7:53494200-53494600	Active TSS	Brain Angular Gyrus	brain
28	chr7:53494200-53494600	Enhancers	Placenta	Placenta
29	chr7:53494400-53494600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:53494400-53495000	Enhancers	Liver	Liver
31	chr7:53495000-53495400	Weak transcription	Liver	Liver
32	chr7:53495400-53496000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links