Variant report

Variant	nsv1024871
Chromosome Location	chr9:16925167-16963863
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 964 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:964 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541893280	chr9:16925227-16925228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563720235	chr9:16925231-16925232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs377708602	chr9:16925241-16925242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs547685688	chr9:16925243-16925244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs527707890	chr9:16925244-16925245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs531480865	chr9:16925262-16925263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs188510031	chr9:16925291-16925292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs10962705	chr9:16925311-16925312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs193231363	chr9:16925320-16925321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs565033316	chr9:16925332-16925333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532387243	chr9:16925336-16925337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs145279108	chr9:16925346-16925347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs10962706	chr9:16925359-16925360	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs116292646	chr9:16925435-16925436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs549262461	chr9:16925450-16925451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs375849724	chr9:16925490-16925491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs112799271	chr9:16925496-16925497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs547842885	chr9:16925500-16925501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs35203401	chr9:16925521-16925522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569655473	chr9:16925530-16925531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147647890	chr9:16925532-16925533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552128856	chr9:16925540-16925541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs558833029	chr9:16925549-16925550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs570709367	chr9:16925550-16925551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs569038495	chr9:16925554-16925555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs183358360	chr9:16925563-16925564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200771334	chr9:16925575-16925576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs186496186	chr9:16925579-16925580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs574558173	chr9:16925585-16925586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs1001301	chr9:16925586-16925587	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs113359811	chr9:16925644-16925645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575605809	chr9:16925651-16925652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs548604645	chr9:16925661-16925662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs543343943	chr9:16925664-16925665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565225044	chr9:16925665-16925666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs112103853	chr9:16925675-16925676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs145923219	chr9:16925708-16925709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531796415	chr9:16925711-16925712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200145264	chr9:16925733-16925734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs541259623	chr9:16925746-16925747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs371948826	chr9:16925767-16925768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs567334383	chr9:16925769-16925770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs140461076	chr9:16925773-16925774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569509235	chr9:16925784-16925785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs530575508	chr9:16925785-16925786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs373720264	chr9:16925789-16925790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs191295950	chr9:16925792-16925793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs570844306	chr9:16925797-16925798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs535002413	chr9:16925805-16925806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs1001300	chr9:16925830-16925831	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Breast cancer	21611746	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16912800-16928000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:16915800-16928200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16923600-16925200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:16923800-16927800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:16924400-16925200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:16925000-16928000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:16925200-16927800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:16927800-16928400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:16927800-16928400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:16927800-16930000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:16928000-16928400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:16928000-16928400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:16928000-16928600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:16928000-16928600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:16928000-16929000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:16928200-16928600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:16928200-16928600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:16928200-16928600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:16928200-16928600	Enhancers	NHDF-Ad	bronchial
20	chr9:16928200-16929000	Enhancers	Osteobl	bone
21	chr9:16928400-16928800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:16928600-16933600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:16933600-16934200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr9:16933600-16934400	Enhancers	Ovary	ovary
25	chr9:16943000-16943800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:16949800-16950400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr9:16949800-16950600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr9:16950200-16950600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr9:16950200-16950600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr9:16950200-16950600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr9:16954400-16954600	Enhancers	Fetal Kidney	kidney
32	chr9:16958200-16958800	Enhancers	NHDF-Ad	bronchial
33	chr9:16958800-16960000	Weak transcription	NHDF-Ad	bronchial
34	chr9:16959400-16960400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:16959800-16960600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr9:16959800-16960600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:16959800-16960600	Enhancers	Hela-S3	cervix
38	chr9:16960000-16960400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:16960000-16960400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:16960000-16960600	Enhancers	NHDF-Ad	bronchial
41	chr9:16960000-16960600	Enhancers	NHLF	lung
42	chr9:16960400-16963200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:16960400-16963600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:16960400-16964000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr9:16960600-16963600	Weak transcription	NHDF-Ad	bronchial
46	chr9:16960600-16963600	Weak transcription	NHLF	lung
47	chr9:16960600-16963800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr9:16960600-16963800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:16963200-16963600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:16963400-16963800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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