Variant report

Variant	nsv1025168
Chromosome Location	chr6:161702621-161831885
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:100)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:100 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:161817088..161818621-chr6:161820651..161823071,2	K562	blood:
2	chr6:161772837..161774713-chr6:161777546..161779588,2	K562	blood:
3	chr6:161767644..161770802-chr6:161771608..161773725,3	K562	blood:
4	chr6:161659487..161662163-chr6:161707057..161710038,2	K562	blood:
5	chr6:161693245..161696920-chr6:161699549..161704020,8	K562	blood:
6	chr6:161695256..161697012-chr6:161781193..161782822,2	K562	blood:
7	chr6:161767644..161770802-chr6:161771608..161773725,3	K562	blood:
8	chr6:161793225..161794761-chr6:161807583..161809833,2	K562	blood:
9	chr6:161714518..161716892-chr6:161724603..161726676,2	MCF-7	breast:
10	chr6:161774090..161774640-chr6:161794629..161795193,2	K562	blood:
11	chr6:161736006..161736599-chr6:161794590..161795509,2	K562	blood:
12	chr6:161767119..161768691-chr6:161769859..161772026,2	K562	blood:
13	chr6:161521066..161521786-chr6:161794667..161795242,2	K562	blood:
14	chr6:161170784..161171753-chr6:161794646..161795782,4	MCF-7	breast:
15	chr6:161804155..161807425-chr6:161808233..161811077,5	K562	blood:
16	chr6:161694248..161696614-chr6:161739767..161743113,3	K562	blood:
17	chr6:161761010..161763771-chr6:161770193..161772937,2	K562	blood:
18	chr6:161554722..161557722-chr6:161792909..161795003,3	K562	blood:
19	chr6:161507724..161510656-chr6:161766500..161768672,2	K562	blood:
20	chr6:161774851..161778239-chr6:161778707..161783071,5	K562	blood:
21	chr6:161774110..161774649-chr6:161791891..161792645,2	MCF-7	breast:
22	chr6:161714518..161716892-chr6:161724603..161726676,2	MCF-7	breast:
23	chr6:161693709..161699536-chr6:161703656..161707469,6	K562	blood:
24	chr6:161712879..161714838-chr6:161719562..161721102,2	K562	blood:
25	chr6:161735875..161738594-chr6:161777466..161779165,2	K562	blood:
26	chr6:161152558..161155557-chr6:161793126..161797169,4	K562	blood:
27	chr6:161561088..161561843-chr6:161794669..161795618,3	K562	blood:
28	chr6:161752310..161754062-chr6:161760945..161763469,2	K562	blood:
29	chr6:161520839..161521632-chr6:161791602..161792128,2	MCF-7	breast:
30	chr6:161694085..161696791-chr6:161764026..161768150,4	K562	blood:
31	chr6:161522442..161523249-chr6:161791588..161792354,3	K562	blood:
32	chr6:161831270..161834160-chr6:161834412..161837720,3	K562	blood:
33	chr16:33964976..33965587-chr6:161803175..161803675,2	MCF-7	breast:
34	chr6:161618614..161620320-chr6:161789402..161791597,2	K562	blood:
35	chr6:161712879..161714838-chr6:161719562..161721102,2	K562	blood:
36	chr6:161719520..161722478-chr6:161734514..161736437,3	K562	blood:
37	chr6:161695125..161696758-chr6:161719805..161722381,2	K562	blood:
38	chr6:161809042..161810655-chr6:161813271..161814976,2	MCF-7	breast:
39	chr6:161470464..161473417-chr6:161702863..161705390,2	K562	blood:
40	chr6:161754902..161757201-chr6:161760270..161762271,2	K562	blood:
41	chr6:161813445..161815530-chr6:162115453..162117705,2	MCF-7	breast:
42	chr6:161699768..161702341-chr6:161744966..161747203,2	K562	blood:
43	chr6:161746822..161749496-chr6:161751712..161754486,2	K562	blood:
44	chr6:161736006..161736599-chr6:161794590..161795509,2	K562	blood:
45	chr6:161774110..161774649-chr6:161791891..161792645,2	MCF-7	breast:
46	chr6:161520982..161521822-chr6:161791879..161792471,2	MCF-7	breast:
47	chr6:161689899..161692665-chr6:161724207..161726282,2	K562	blood:
48	chr6:161827498..161831035-chr6:161833776..161838096,4	K562	blood:
49	chr6:161712578..161714838-chr6:161719562..161722427,2	K562	blood:
50	chr6:161566087..161569641-chr6:161785856..161789665,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000200434	chromatin interactions
ENSG00000026652	chromatin interactions

Extended variants
information (count: 5047 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:5047 , 50 per page) page: 1 2 3 4 5 6 7 ... 101

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147768900	chr6:161702730-161702731	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs12195786	chr6:161702754-161702755	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs557258820	chr6:161702766-161702767	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs574015992	chr6:161702768-161702769	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs113628150	chr6:161702796-161702797	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs62437585	chr6:161702822-161702823	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs189582314	chr6:161702845-161702846	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs111374921	chr6:161702878-161702879	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs573240157	chr6:161702879-161702880	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs35750118	chr6:161702895-161702896	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs545216889	chr6:161702933-161702934	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs180806571	chr6:161702955-161702956	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs565271266	chr6:161702960-161702961	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs145031721	chr6:161703035-161703036	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs113331494	chr6:161703041-161703042	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs563548730	chr6:161703104-161703105	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs373305	chr6:161703142-161703143	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs549158567	chr6:161703161-161703162	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs565740752	chr6:161703175-161703176	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs371990525	chr6:161703185-161703186	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs528187837	chr6:161703201-161703202	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs551229141	chr6:161703235-161703236	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs35121262	chr6:161703274-161703275	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs571199363	chr6:161703290-161703291	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs536753009	chr6:161703307-161703308	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs144933604	chr6:161703333-161703334	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs556554447	chr6:161703354-161703355	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs567578526	chr6:161703413-161703414	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs536547961	chr6:161703415-161703416	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs1265310	chr6:161703428-161703429	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs149063680	chr6:161703440-161703441	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs545467255	chr6:161703459-161703460	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs558813302	chr6:161703460-161703461	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs191168103	chr6:161703489-161703490	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs544585496	chr6:161703490-161703491	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs143334613	chr6:161703560-161703561	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs573934905	chr6:161703561-161703562	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs11970148	chr6:161703566-161703567	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs183819445	chr6:161703584-161703585	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs559491619	chr6:161703623-161703624	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs147024973	chr6:161703646-161703647	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs539061766	chr6:161703669-161703670	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs559227742	chr6:161703721-161703722	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs528311380	chr6:161703766-161703767	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs551574298	chr6:161703770-161703771	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs368643750	chr6:161703778-161703779	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs148358642	chr6:161703794-161703795	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs572632869	chr6:161703816-161703817	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs550110920	chr6:161703825-161703826	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs140716833	chr6:161703828-161703829	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Intellectual disability	22102821	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Parkinson disease	0	CNVD

Chromatin state (count:979 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161696000-161705600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:161699800-161712800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:161702200-161702800	ZNF genes & repeats	K562	blood
4	chr6:161702800-161703800	Weak transcription	K562	blood
5	chr6:161703800-161704000	ZNF genes & repeats	K562	blood
6	chr6:161704000-161713800	Weak transcription	K562	blood
7	chr6:161705600-161705800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:161705800-161706200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:161705800-161706400	Enhancers	HMEC	breast
10	chr6:161706200-161706600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:161706200-161706600	Enhancers	NHEK	skin
12	chr6:161707400-161708200	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:161707600-161708000	Enhancers	Brain Substantia Nigra	brain
14	chr6:161707800-161708400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:161708400-161714000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:161711600-161711800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
17	chr6:161711800-161712400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:161712000-161713600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:161712000-161715200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:161712400-161714200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:161712600-161713200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:161712600-161713400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:161712600-161713600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:161712800-161713400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:161712800-161713400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:161712800-161714400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:161712800-161714400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:161712800-161714400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:161713000-161713800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:161713000-161713800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:161713000-161715200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:161713200-161713600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:161713200-161714000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr6:161713200-161714000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr6:161713200-161714200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:161713400-161713800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:161713400-161713800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:161713400-161714000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr6:161713600-161713800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr6:161713600-161719600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:161713800-161714000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr6:161713800-161714000	Weak transcription	Brain Substantia Nigra	brain
43	chr6:161713800-161714200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr6:161713800-161714200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:161713800-161714600	Enhancers	K562	blood
46	chr6:161713800-161715000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr6:161713800-161715200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:161713800-161715200	Enhancers	Brain Hippocampus Middle	brain
49	chr6:161714000-161714200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr6:161714000-161714200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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