Variant report

Variant	nsv1025404
Chromosome Location	chr6:162054373-162437395
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:56)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:56 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:162291697..162293198-chr6:162305600..162307370,2	K562	blood:
2	chr6:162211723..162213448-chr6:162215614..162217575,2	K562	blood:
3	chr6:162211723..162213448-chr6:162215614..162217575,2	K562	blood:
4	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
5	chr6:162313026..162315357-chr6:162317264..162319780,2	K562	blood:
6	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
7	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
8	chr6:162232298..162233805-chr6:162237071..162239613,2	K562	blood:
9	chr6:162056640..162058918-chr6:162062226..162064429,2	K562	blood:
10	chr6:162135808..162138276-chr6:162142475..162145172,2	K562	blood:
11	chr6:162274815..162277621-chr6:162282085..162283805,2	K562	blood:
12	chr6:162111336..162114011-chr6:162137192..162139483,2	K562	blood:
13	chr6:162111336..162114011-chr6:162137192..162139483,2	K562	blood:
14	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
15	chr6:162212614..162214396-chr6:162214709..162217609,2	MCF-7	breast:
16	chr20:46012429..46013123-chr6:162169752..162170322,2	MCF-7	breast:
17	chr6:162052847..162055292-chr6:162059575..162062461,2	MCF-7	breast:
18	chr6:162307888..162309501-chr6:162310852..162312650,2	K562	blood:
19	chr6:162064140..162064803-chr7:123198816..123199394,2	MCF-7	breast:
20	chr6:162232298..162233805-chr6:162237071..162239613,2	K562	blood:
21	chr6:162291697..162293198-chr6:162305600..162307370,2	K562	blood:
22	chr6:162216587..162218691-chr6:162225101..162227602,2	K562	blood:
23	chr6:162080897..162083173-chr6:162084992..162086582,2	K562	blood:
24	chr6:162207547..162209957-chr6:162210445..162213994,3	K562	blood:
25	chr6:162080897..162083173-chr6:162084992..162086582,2	K562	blood:
26	chr6:162307888..162309501-chr6:162310852..162312650,2	K562	blood:
27	chr6:162075282..162077598-chr6:162078551..162080758,2	K562	blood:
28	chr6:161813445..161815530-chr6:162115453..162117705,2	MCF-7	breast:
29	chr6:162052847..162055292-chr6:162059575..162062461,2	MCF-7	breast:
30	chr6:162274815..162277621-chr6:162282085..162283805,2	K562	blood:
31	chr6:162216587..162218691-chr6:162225101..162227602,2	K562	blood:
32	chr6:162313026..162315357-chr6:162317264..162319780,2	K562	blood:
33	chr6:162135808..162138276-chr6:162142475..162145172,2	K562	blood:
34	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
35	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
36	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
37	chr6:162039551..162040468-chr6:162115665..162116674,7	MCF-7	breast:
38	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
39	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
40	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
41	chr6:162212614..162214396-chr6:162214709..162217609,2	MCF-7	breast:
42	chr6:162056640..162058918-chr6:162062226..162064429,2	K562	blood:
43	chr19:35885081..35886581-chr6:162062521..162064392,2	K562	blood:
44	chr6:162057469..162059362-chr6:162068678..162070292,2	K562	blood:
45	chr6:162075282..162077598-chr6:162078551..162080758,2	K562	blood:
46	chr6:162057469..162059362-chr6:162068678..162070292,2	K562	blood:
47	chr6:162258117..162258784-chr6:162338530..162339165,2	MCF-7	breast:
48	chr6:162041107..162043997-chr6:162053743..162055556,2	K562	blood:
49	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
50	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:

No data

Extended variants
information (count: 15059 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:15059 , 50 per page) page: 1 2 3 4 5 6 7 ... 302

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375375704	chr6:162054375-162054376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs192183027	chr6:162054382-162054383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs561220648	chr6:162054388-162054389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560390776	chr6:162054395-162054396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs139774535	chr6:162054410-162054411	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs200039753	chr6:162054414-162054415	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs184963895	chr6:162054423-162054424	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs117460868	chr6:162054424-162054425	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs200840895	chr6:162054429-162054430	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs557966535	chr6:162054432-162054433	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs143668536	chr6:162054437-162054438	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs561311038	chr6:162054475-162054476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs527985984	chr6:162054533-162054534	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs147188120	chr6:162054576-162054577	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs570999203	chr6:162054579-162054580	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs78752907	chr6:162054684-162054685	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs189687967	chr6:162054703-162054704	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs371489312	chr6:162054728-162054729	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs550483939	chr6:162054769-162054770	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs570154828	chr6:162054830-162054831	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs535918875	chr6:162054835-162054836	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs140636132	chr6:162054839-162054840	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs144483973	chr6:162054856-162054857	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs534128158	chr6:162054862-162054863	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs79835841	chr6:162054912-162054913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs530834504	chr6:162054977-162054978	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs545954669	chr6:162054989-162054990	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs529083581	chr6:162055026-162055027	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs374475206	chr6:162055029-162055030	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs141101298	chr6:162055030-162055031	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs181305576	chr6:162055052-162055053	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs556053953	chr6:162055072-162055073	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs369883707	chr6:162055131-162055132	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552596144	chr6:162055132-162055133	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs145469419	chr6:162055146-162055147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs35265056	chr6:162055160-162055161	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs560218818	chr6:162055171-162055172	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs541361753	chr6:162055174-162055175	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs564783517	chr6:162055228-162055229	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113917141	chr6:162055230-162055231	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375366515	chr6:162055236-162055237	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs533430452	chr6:162055277-162055278	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs550365850	chr6:162055287-162055288	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs570110924	chr6:162055303-162055304	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs529412121	chr6:162055323-162055324	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs117237280	chr6:162055370-162055371	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs148392009	chr6:162055390-162055391	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184509303	chr6:162055398-162055399	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs188767413	chr6:162055434-162055435	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs570743777	chr6:162055516-162055517	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Bipolar disorder	19114987	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1194 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162051000-162060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:162052400-162055200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:162053200-162054400	Weak transcription	Brain Germinal Matrix	brain
4	chr6:162053200-162056200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:162053200-162057600	Weak transcription	Fetal Kidney	kidney
6	chr6:162053200-162060800	Weak transcription	Fetal Lung	lung
7	chr6:162053400-162054600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:162053400-162057000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:162053400-162057600	Weak transcription	Fetal Stomach	stomach
10	chr6:162053600-162058400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:162054400-162055200	Enhancers	Brain Germinal Matrix	brain
12	chr6:162054600-162055400	Enhancers	Fetal Muscle Leg	muscle
13	chr6:162055200-162055400	Enhancers	Fetal Muscle Trunk	muscle
14	chr6:162055200-162056400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:162055400-162055600	Enhancers	NH-A	brain
16	chr6:162055400-162057000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:162055400-162057400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:162056400-162056800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:162056800-162057600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:162057000-162057400	Enhancers	Pancreas	Pancrea
21	chr6:162057000-162057600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:162057000-162057600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:162057000-162057800	Enhancers	Fetal Muscle Trunk	muscle
24	chr6:162057200-162057400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:162057200-162057400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:162057200-162057400	Enhancers	Left Ventricle	heart
27	chr6:162057400-162057600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:162057400-162058600	Weak transcription	Pancreas	Pancrea
29	chr6:162057600-162057800	Enhancers	Fetal Muscle Leg	muscle
30	chr6:162057600-162058000	Enhancers	Fetal Stomach	stomach
31	chr6:162057600-162058200	Enhancers	Fetal Kidney	kidney
32	chr6:162057600-162058800	Weak transcription	Left Ventricle	heart
33	chr6:162057600-162068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:162058200-162058800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:162058200-162061400	Weak transcription	Fetal Kidney	kidney
36	chr6:162058400-162058800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:162058400-162059400	Enhancers	Liver	Liver
38	chr6:162058800-162059000	Enhancers	Pancreas	Pancrea
39	chr6:162058800-162059600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:162058800-162060800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:162059600-162061200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:162060200-162061000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:162060400-162060600	Enhancers	Left Ventricle	heart
44	chr6:162060400-162060800	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:162060400-162060800	Enhancers	Brain Substantia Nigra	brain
46	chr6:162060400-162061800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:162060600-162060800	Enhancers	Brain Germinal Matrix	brain
48	chr6:162060600-162061000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:162060600-162061600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:162060800-162061200	Enhancers	Fetal Lung	lung

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