Variant report
| Variant | nsv1025582 |
|---|---|
| Chromosome Location | chr7:56785833-56835595 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs556174983 | chr7:56794449-56794450 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs140224775 | chr7:56794450-56794451 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs371998812 | chr7:56794472-56794473 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs571011149 | chr7:56794476-56794477 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs541894023 | chr7:56794582-56794583 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs560387072 | chr7:56794604-56794605 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs150323167 | chr7:56794658-56794659 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs11773777 | chr7:56794668-56794669 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 9 | rs113659154 | chr7:56794684-56794685 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs111791284 | chr7:56794701-56794702 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs549786020 | chr7:56794721-56794722 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs149088831 | chr7:56794746-56794747 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs73699552 | chr7:56794757-56794758 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 14 | rs547420498 | chr7:56794822-56794823 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs78837769 | chr7:56794842-56794843 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs565645647 | chr7:56794871-56794872 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs539608615 | chr7:56794926-56794927 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs184177763 | chr7:56794936-56794937 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs569601088 | chr7:56794965-56794966 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs77528272 | chr7:56794984-56794985 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs554216960 | chr7:56794994-56794995 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs555265723 | chr7:56794999-56795000 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs568067528 | chr7:56795050-56795051 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs535491626 | chr7:56795072-56795073 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs34856918 | chr7:56795117-56795118 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs554231357 | chr7:56795140-56795141 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs373802552 | chr7:56795223-56795224 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs572493396 | chr7:56795286-56795287 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs567927528 | chr7:56795316-56795317 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs546355231 | chr7:56795322-56795323 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs558101845 | chr7:56795323-56795324 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs187793933 | chr7:56795326-56795327 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs576725044 | chr7:56795359-56795360 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs62460194 | chr7:56795374-56795375 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:82)
| Disease | PMID | Source |
|---|---|---|
| Neuroblastoma | 18923191 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Glioma | 21971842 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Oral cancer | 21386901 | CNVD |
| colon cancer | 17210682 | CNVD |
| Lung adenocarcinoma | 21810691 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Hypothalamic hamartomas | 18252217 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Peripheral t-cell lymphoma | 19118030 | CNVD |
| Medulloblastoma | 18056178 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Seminomas | 18059402 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Autism | 19415332 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Malaria | 21533027 | CNVD |
| Melanoma | 18172304 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| head and neck squamous cell carcinoma | 19289630 | CNVD |
| Stenocardia | 21860640 | CNVD |
| Vasospasm | 21860640 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Autism | 22495311 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Cancer | 21183584 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Williams-beuren syndrome | 22470819 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Gastric cancer | 24379144 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| Lung cancer | 18438408 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Lissencephaly | 21572526 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Glioblastoma multiforme | 22291905 | CNVD |
| Glioblastoma multiforme | 19435819 | CNVD |
| Intracranial ependymoma | 16609018 | CNVD |
| Lung cancer | 21911935 | CNVD |
| Urothelial cell carcinoma | 18451213 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Colorectal cancer | 19455253 | CNVD |
| Lung cancer | 17925434 | CNVD |
| Glioma | 24330732 | CNVD |
| Lung adenocarcinoma | 23938291 | CNVD |
| Glioma | 17634744 | CNVD |
| Oral squamous cell carcinoma | 19276369 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| Lung cancer | 20031968 | CNVD |
| Glioblastoma | 17090523 | CNVD |
| Esophageal squamous carcinoma | 18405350 | CNVD |
| Glioma | 17123091 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Medullary thyroid carcinoma | 18765511 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:56794400-56795400 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
| 2 | chr7:56794600-56795000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
