Variant report

Variant	nsv1025650
Chromosome Location	chr6:74567731-74611185
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:74564309..74565336-chr6:74608092..74608897,3	MCF-7	breast:
2	chr6:74564379..74565320-chr6:74608025..74608803,2	MCF-7	breast:
3	chr6:74448554..74449078-chr6:74608125..74608832,2	MCF-7	breast:
4	chr6:74565754..74566717-chr6:74608280..74609006,4	MCF-7	breast:
5	chr6:74565749..74566422-chr6:74608012..74609100,4	MCF-7	breast:

Extended variants
information (count: 1226 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:1226 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542602995	chr6:74567739-74567740	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs562023944	chr6:74567757-74567758	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs146879891	chr6:74567762-74567763	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs541242911	chr6:74567830-74567831	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs117542022	chr6:74567927-74567928	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs533143922	chr6:74567953-74567954	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs551526373	chr6:74568014-74568015	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs569763719	chr6:74568031-74568032	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs183507719	chr6:74568102-74568103	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs6932346	chr6:74568115-74568116	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs140649719	chr6:74568118-74568119	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs187837906	chr6:74568174-74568175	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs145812705	chr6:74568178-74568179	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs571777205	chr6:74568227-74568228	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs571556083	chr6:74568232-74568233	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs537630629	chr6:74568233-74568234	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs72961217	chr6:74568359-74568360	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs557074654	chr6:74568392-74568393	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs76120607	chr6:74568402-74568403	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs575294973	chr6:74568429-74568430	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs536248456	chr6:74568438-74568439	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs148150157	chr6:74568439-74568440	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs573895288	chr6:74568465-74568466	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs540999146	chr6:74568472-74568473	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs9442979	chr6:74568479-74568480	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs577957159	chr6:74568518-74568519	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs545212559	chr6:74568589-74568590	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs561329144	chr6:74568605-74568606	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs563376672	chr6:74568610-74568611	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs573425398	chr6:74568612-74568613	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs9352034	chr6:74568634-74568635	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs76128867	chr6:74568684-74568685	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs28428588	chr6:74568690-74568691	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs560759531	chr6:74568733-74568734	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs540934445	chr6:74568765-74568766	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs141193385	chr6:74568795-74568796	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs191865148	chr6:74568830-74568831	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571600264	chr6:74568877-74568878	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs78131080	chr6:74568956-74568957	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs550714280	chr6:74568995-74568996	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs183690591	chr6:74569015-74569016	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536311888	chr6:74569055-74569056	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs567764060	chr6:74569066-74569067	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs533103765	chr6:74569075-74569076	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs555031299	chr6:74569087-74569088	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs573182329	chr6:74569093-74569094	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs150336579	chr6:74569099-74569100	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs553029897	chr6:74569106-74569107	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs188211085	chr6:74569117-74569118	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545247186	chr6:74569124-74569125	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74534400-74580600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:74555400-74574400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:74555600-74569600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:74556000-74576000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:74556800-74574400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:74562000-74577800	Weak transcription	Aorta	Aorta
7	chr6:74564800-74574800	Weak transcription	HUVEC	blood vessel
8	chr6:74565200-74567800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:74565400-74575800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:74565600-74580400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:74565800-74571800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:74565800-74582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:74566800-74567800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:74566800-74569200	Strong transcription	HMEC	breast
15	chr6:74566800-74569800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:74567600-74568800	Enhancers	NHDF-Ad	bronchial
17	chr6:74567600-74576000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:74567600-74586200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:74567800-74568400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:74567800-74576000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:74568400-74573800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:74568800-74582400	Weak transcription	NHDF-Ad	bronchial
23	chr6:74569200-74571600	Weak transcription	HMEC	breast
24	chr6:74569800-74576000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:74571600-74572200	Strong transcription	HMEC	breast
26	chr6:74571800-74575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:74572200-74580200	Weak transcription	HMEC	breast
28	chr6:74573800-74582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:74575400-74576000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:74576000-74576200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:74576000-74576200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr6:74576000-74576200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:74576000-74576400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:74576000-74576400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:74576000-74576400	Enhancers	GM12878-XiMat	blood
36	chr6:74576200-74576400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr6:74576200-74580200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:74576400-74577000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:74576400-74581800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:74576400-74582200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:74580200-74581000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:74580200-74581000	Enhancers	HMEC	breast
43	chr6:74580400-74581200	Enhancers	NHEK	skin
44	chr6:74580400-74581400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:74580400-74581800	Enhancers	Placenta	Placenta
46	chr6:74580600-74580800	Enhancers	Placenta Amnion	Placenta Amnion
47	chr6:74581000-74581600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:74581000-74582800	Weak transcription	HMEC	breast
49	chr6:74581200-74583000	Weak transcription	NHEK	skin
50	chr6:74581600-74582200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links