Variant report

Variant	nsv1025737
Chromosome Location	chr6:62096356-62240994
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59605919..59608899-chr6:62197305..62198810,2	MCF-7	breast:

Extended variants
information (count: 3645 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:3645 , 50 per page) page: 1 2 3 4 5 6 7 ... 73

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547621159	chr6:62103407-62103408	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs377418143	chr6:62103424-62103425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs145634672	chr6:62103427-62103428	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs535987735	chr6:62103433-62103434	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs79870228	chr6:62103441-62103442	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs576041239	chr6:62103445-62103446	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs569906878	chr6:62103454-62103455	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs536676992	chr6:62103460-62103461	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs558129994	chr6:62103468-62103469	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs373531487	chr6:62103481-62103482	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs115308218	chr6:62103485-62103486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs9500766	chr6:62103494-62103495	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs559525235	chr6:62103499-62103500	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs193266923	chr6:62103505-62103506	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs151066208	chr6:62103522-62103523	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs563831096	chr6:62103525-62103526	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs530902966	chr6:62103532-62103533	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs140967022	chr6:62103535-62103536	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs9500767	chr6:62103569-62103570	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs9500768	chr6:62103596-62103597	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs150147023	chr6:62103600-62103601	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs111162102	chr6:62178609-62178610	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs377708281	chr6:62178621-62178622	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs371167091	chr6:62178623-62178624	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs376172655	chr6:62178625-62178626	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs368171771	chr6:62178648-62178649	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs371208307	chr6:62178649-62178650	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs373974574	chr6:62178651-62178652	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs368142729	chr6:62178658-62178659	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs371350003	chr6:62178659-62178660	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs375927686	chr6:62178664-62178665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs367774795	chr6:62178669-62178670	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs372123676	chr6:62178670-62178671	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs552758111	chr6:62178685-62178686	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs375457606	chr6:62178687-62178688	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs369394285	chr6:62178692-62178693	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs373767132	chr6:62178694-62178695	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs375229706	chr6:62178695-62178696	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs369535386	chr6:62178700-62178701	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs186349152	chr6:62178704-62178705	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs372922762	chr6:62178705-62178706	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs377339409	chr6:62178712-62178713	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs370321234	chr6:62178714-62178715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs374291752	chr6:62178716-62178717	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs377764203	chr6:62178720-62178721	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs370768102	chr6:62178721-62178722	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs112816424	chr6:62178753-62178754	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs116679164	chr6:62178766-62178767	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs535084632	chr6:62178769-62178770	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs191094086	chr6:62178832-62178833	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD
Tetralogy of Fallot	22912587	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62103400-62103600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:62178600-62179800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr6:62178600-62180600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr6:62178600-62182000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:62178800-62182400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr6:62179000-62180400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr6:62181600-62182200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr6:62181800-62185800	ZNF genes & repeats	Liver	Liver
9	chr6:62182000-62182400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr6:62184000-62184800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr6:62184000-62185400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr6:62184200-62185800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr6:62187000-62188000	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr6:62187200-62188000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:62187200-62190400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr6:62187400-62197200	ZNF genes & repeats	Liver	Liver
17	chr6:62187800-62188400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:62189000-62190200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:62189200-62189800	ZNF genes & repeats	Pancreas	Pancrea
20	chr6:62189200-62192400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:62192600-62194800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr6:62196000-62197000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr6:62197000-62199600	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr6:62198200-62204200	ZNF genes & repeats	Liver	Liver
25	chr6:62198600-62207400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:62200000-62200200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr6:62201600-62202400	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr6:62201800-62202200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:62201800-62202400	Active TSS	Right Atrium	heart
30	chr6:62202400-62206200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr6:62205600-62213400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr6:62205800-62214600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
33	chr6:62207800-62209600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
34	chr6:62209400-62230600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
35	chr6:62210200-62212000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:62219200-62219400	ZNF genes & repeats	Psoas Muscle	Psoas
37	chr6:62219800-62223600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
38	chr6:62220800-62229200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:62221200-62229400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
40	chr6:62222800-62223000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
41	chr6:62223200-62224600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
42	chr6:62223800-62224800	ZNF genes & repeats	Psoas Muscle	Psoas
43	chr6:62224400-62227200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
44	chr6:62224800-62228000	ZNF genes & repeats	Liver	Liver
45	chr6:62225200-62226400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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