Variant report

Variant	nsv1025810
Chromosome Location	chr6:77429683-77452804
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:77420178..77422936-chr6:77426529..77430097,4	MCF-7	breast:

Extended variants
information (count: 847 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:847 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560502216	chr6:77429752-77429753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs77029592	chr6:77429812-77429813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs546163890	chr6:77429864-77429865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs76513133	chr6:77429871-77429872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs531413950	chr6:77429898-77429899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs375619580	chr6:77429899-77429900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs12660672	chr6:77429928-77429929	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs181288539	chr6:77429931-77429932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs144421390	chr6:77429958-77429959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs546974125	chr6:77429964-77429965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35971720	chr6:77429982-77429983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs565378418	chr6:77429987-77429988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs537499639	chr6:77430032-77430033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs12660674	chr6:77430046-77430047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs546798499	chr6:77430061-77430062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs6453931	chr6:77430072-77430073	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs532321483	chr6:77430087-77430088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570985467	chr6:77430133-77430134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538072933	chr6:77430203-77430204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs538365665	chr6:77430228-77430229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374607742	chr6:77430269-77430270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs556595010	chr6:77430286-77430287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs370783264	chr6:77430296-77430297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574819200	chr6:77430302-77430303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147812192	chr6:77430306-77430307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs554203357	chr6:77430316-77430317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs1379665	chr6:77430365-77430366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs546078325	chr6:77430389-77430390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564386250	chr6:77430415-77430416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77784160	chr6:77430574-77430575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs576157511	chr6:77430591-77430592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs543225070	chr6:77430607-77430608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs112633629	chr6:77430648-77430649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs190310765	chr6:77430667-77430668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75315180	chr6:77430822-77430823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs547092095	chr6:77430833-77430834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs147059654	chr6:77430854-77430855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs532804082	chr6:77430872-77430873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs552435516	chr6:77430896-77430897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs568797947	chr6:77430932-77430933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7751765	chr6:77430939-77430940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs7772179	chr6:77430950-77430951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs79886470	chr6:77430962-77430963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs370774964	chr6:77430983-77430984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs538549958	chr6:77430993-77430994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7752317	chr6:77431031-77431032	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs568645248	chr6:77431036-77431037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545716690	chr6:77431046-77431047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs77673909	chr6:77431080-77431081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs535952217	chr6:77431085-77431086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77425600-77433000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:77434400-77434600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:77436200-77437000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:77439200-77441000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr6:77441000-77452800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:77443200-77443600	Active TSS	Aorta	Aorta
7	chr6:77452400-77470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:77452800-77454400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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