Variant report

Variant	nsv1026517
Chromosome Location	chr6:77622310-77827418
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:16)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77630606..77632984-chr6:77637427..77639871,2	K562	blood:
2	chr6:77407151..77408023-chr6:77621937..77622579,2	MCF-7	breast:
3	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
4	chr3:129659620..129661352-chr6:77785922..77787442,2	MCF-7	breast:
5	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
6	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
7	chr6:77789816..77792287-chr6:77876567..77879550,2	K562	blood:
8	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:
9	chr6:77630606..77632984-chr6:77637427..77639871,2	K562	blood:

(count:16 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-15	chr6:77682889-77683422	NONHSAT113650
2	lnc-MYO6-12	chr6:77798170-77801007	NONHSAT113653
3	lnc-MYO6-3	chr6:77698014-77698599	XLOC_005355
4	lnc-MYO6-15	chr6:77731337-77731835	NONHSAT113650
5	lnc-MYO6-15	chr6:77658958-77659487	NONHSAT113650
6	lnc-HTR1B-2	chr6:77822661-77823096	XLOC_005768
7	lnc-MYO6-15	chr6:77628029-77628655	NONHSAT113650
8	lnc-MYO6-15	chr6:77638732-77638769	NONHSAT113650
9	lnc-MYO6-15	chr6:77661074-77663494	NONHSAT113651
10	lnc-MYO6-15	chr6:77666315-77666328	NONHSAT113650
11	lnc-MYO6-15	chr6:77665983-77666282	NONHSAT113650
12	lnc-MYO6-11	chr6:77755026-77755145	l_3207_chr6:77541429-77755145_testes
13	lnc-MYO6-15	chr6:77661074-77663494	FPKM1_group_27832_transcript_1
14	lnc-MYO6-11	chr6:77754733-77754969	l_3207_chr6:77541429-77755145_testes
15	lnc-MYO6-15	chr6:77663786-77664113	FPKM1_group_27832_transcript_1
16	lnc-MYO6-15	chr6:77663786-77667065	NONHSAT113651

No data

Variant related genes	Relation type
CHMP2B	miRNA target sites
EIF4G3	miRNA target sites

Extended variants
information (count: 4054 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:4054 , 50 per page) page: 1 2 3 4 5 6 7 ... 82

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35652414	chr6:77628045-77628046	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs915287	chr6:77628138-77628139	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs572779937	chr6:77628197-77628198	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs142194752	chr6:77628287-77628288	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs201310881	chr6:77628288-77628289	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs68112333	chr6:77628289-77628290	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs56255956	chr6:77628290-77628291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs113241143	chr6:77628291-77628292	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs531178220	chr6:77628293-77628294	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs184609653	chr6:77628315-77628316	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs569165779	chr6:77628326-77628327	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs9443326	chr6:77628331-77628332	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs1335436	chr6:77628359-77628360	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs139775861	chr6:77628375-77628376	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs116628671	chr6:77628424-77628425	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs558754152	chr6:77628455-77628456	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs143074452	chr6:77628620-77628621	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs146139750	chr6:77628632-77628633	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs556501992	chr6:77628641-77628642	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs574834565	chr6:77628648-77628649	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs529880475	chr6:77631879-77631880	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs1932212	chr6:77631909-77631910	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs114074274	chr6:77631969-77631970	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs79236309	chr6:77631988-77631989	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs150138461	chr6:77632013-77632014	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs566399628	chr6:77632028-77632029	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs187381534	chr6:77632047-77632048	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs192217323	chr6:77632065-77632066	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs181066279	chr6:77632074-77632075	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs1577428	chr6:77632108-77632109	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs138842940	chr6:77632111-77632112	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs75408186	chr6:77632149-77632150	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs558494070	chr6:77632172-77632173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs576856664	chr6:77632189-77632190	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs73457219	chr6:77632191-77632192	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs368511422	chr6:77634005-77634006	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs139009216	chr6:77634009-77634010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs565118380	chr6:77634018-77634019	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs540752941	chr6:77634029-77634030	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs532319332	chr6:77634038-77634039	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs550711364	chr6:77634056-77634057	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs568932154	chr6:77634057-77634058	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs141539897	chr6:77634079-77634080	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs9447916	chr6:77634129-77634130	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs565258529	chr6:77634148-77634149	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs566327072	chr6:77634153-77634154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs150871821	chr6:77634193-77634194	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs553361138	chr6:77634200-77634201	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs571520181	chr6:77634231-77634232	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs371838907	chr6:77634288-77634289	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:232 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77631800-77632200	ZNF genes & repeats	Ovary	ovary
2	chr6:77634000-77634200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:77634000-77634200	ZNF genes & repeats	Left Ventricle	heart
4	chr6:77634000-77634600	ZNF genes & repeats	Aorta	Aorta
5	chr6:77634600-77636200	Weak transcription	Aorta	Aorta
6	chr6:77636200-77636400	ZNF genes & repeats	Aorta	Aorta
7	chr6:77664600-77665000	Enhancers	Fetal Brain Male	brain
8	chr6:77664600-77665400	Enhancers	Brain Germinal Matrix	brain
9	chr6:77668400-77668600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:77668600-77669200	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:77669000-77669200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:77675400-77676000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:77681800-77682400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:77682000-77682400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:77682000-77682800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:77682000-77683000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:77682200-77682800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:77682400-77682800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:77682600-77683000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:77691000-77692600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:77691400-77691600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:77692600-77692800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr6:77692800-77693600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:77698200-77699000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:77699000-77703400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:77702400-77702600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:77711400-77711800	Enhancers	Fetal Heart	heart
28	chr6:77721000-77722200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:77724600-77725400	Enhancers	Brain Germinal Matrix	brain
30	chr6:77725000-77725200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:77725000-77725200	Enhancers	Liver	Liver
32	chr6:77725000-77725400	Enhancers	HSMM	muscle
33	chr6:77725200-77726800	Weak transcription	Liver	Liver
34	chr6:77725200-77736000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:77726800-77728200	Enhancers	Liver	Liver
36	chr6:77728200-77731000	Weak transcription	Liver	Liver
37	chr6:77731000-77731400	Enhancers	Liver	Liver
38	chr6:77731400-77731800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:77735600-77736000	Enhancers	Osteobl	bone
40	chr6:77736000-77736600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:77736000-77737000	Enhancers	Hela-S3	cervix
42	chr6:77736000-77740800	Weak transcription	Osteobl	bone
43	chr6:77736200-77736600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:77736600-77743400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:77740400-77740800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:77740400-77741200	Enhancers	HSMM	muscle
47	chr6:77740600-77741200	Active TSS	Liver	Liver
48	chr6:77740800-77741200	Enhancers	HSMMtube	muscle
49	chr6:77740800-77741200	Enhancers	Osteobl	bone
50	chr6:77740800-77741400	Enhancers	HMEC	breast

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