Variant report
| Variant | nsv1026732 |
|---|---|
| Chromosome Location | chr8:3528785-3542961 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs532319461 | chr8:3529202-3529203 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs73183305 | chr8:3529213-3529214 | Enhancers ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs551624829 | chr8:3529223-3529224 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs530129965 | chr8:3529251-3529252 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs548712895 | chr8:3529265-3529266 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs7838406 | chr8:3529287-3529288 | Enhancers ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs370189465 | chr8:3529325-3529326 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs372581854 | chr8:3529330-3529331 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs527833961 | chr8:3529332-3529333 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs533945770 | chr8:3529335-3529336 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs536180705 | chr8:3529340-3529341 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs534316270 | chr8:3529355-3529356 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs191845945 | chr8:3529358-3529359 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs200650314 | chr8:3529388-3529389 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs556469840 | chr8:3529393-3529394 | Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs62474695 | chr8:3529403-3529404 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs13272712 | chr8:3529411-3529412 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 18 | rs543078706 | chr8:3529427-3529428 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs141020719 | chr8:3529441-3529442 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs572842370 | chr8:3529446-3529447 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs184130705 | chr8:3529474-3529475 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs73183306 | chr8:3529512-3529513 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 23 | rs377576814 | chr8:3529520-3529521 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs7815362 | chr8:3529525-3529526 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 25 | rs188890356 | chr8:3529547-3529548 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs113819185 | chr8:3529581-3529582 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs73183307 | chr8:3529596-3529597 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 28 | rs529930561 | chr8:3529598-3529599 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs375313290 | chr8:3529600-3529601 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs116265489 | chr8:3529613-3529614 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs80147417 | chr8:3529627-3529628 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs73183308 | chr8:3529634-3529635 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 33 | rs112643904 | chr8:3529638-3529639 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs570551364 | chr8:3529640-3529641 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 35 | rs73183309 | chr8:3529643-3529644 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 36 | rs550478628 | chr8:3529644-3529645 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 37 | rs73183311 | chr8:3529670-3529671 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 38 | rs141141906 | chr8:3529675-3529676 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 39 | rs367557215 | chr8:3529691-3529692 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 40 | rs572978328 | chr8:3529693-3529694 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 41 | rs112140954 | chr8:3529695-3529696 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 42 | rs73183312 | chr8:3529697-3529698 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 43 | rs558579629 | chr8:3529698-3529699 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 44 | rs191779437 | chr8:3529703-3529704 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 45 | rs544159385 | chr8:3529720-3529721 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 46 | rs562813862 | chr8:3529749-3529750 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 47 | rs574516618 | chr8:3529792-3529793 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 48 | rs542008884 | chr8:3529793-3529794 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 49 | rs79392987 | chr8:3529833-3529834 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 50 | rs527769026 | chr8:3529834-3529835 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:123)
| Disease | PMID | Source |
|---|---|---|
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| abnormal development | 18461090 | CNVD |
| Crohn''s disease | 19220326 | CNVD |
| Psoriasis | 19220326 | CNVD |
| Prostate cancer | 21965145 | CNVD |
| Prostate cancer | 18515986 | CNVD |
| Chronic obstructive pulmonary disease | 20378733 | CNVD |
| Autism | 18414403 | CNVD |
| Cancer | 21183584 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Myeloproliferative neoplasm | 20015882 | CNVD |
| Ovarian cancer | 20844748 | CNVD |
| Cervical cancer | 17311676 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
| Schizophrenia | 20877625 | CNVD |
| Disorders of sex development | 21048976 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Follicular lymphoma | 17170743 | CNVD |
| Breast cancer | 17001317 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Heart disease | 21282601 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Ovarian cancer | 22174824 | CNVD |
| Colorectal cancer | 21297112 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Salivary gland tumor | 18059337 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Melanoma | 18172304 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Chronic lymphocytic leukemia | 18922857 | CNVD |
| Breast cancer | 17393978 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Cancer | 21637783 | CNVD |
| Breast cancer | 20837533 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Cancer | 22429812 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Basal cell lymphoma | 21115979 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Prostate cancer | 21088497 | CNVD |
| Breast cancer | 20940404 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Embryonal rhabdomyosarcoma | 16790082 | CNVD |
| Gastric cancer | 17167181 | CNVD |
| Prostate cancer | 16705090 | CNVD |
| 8p-syndrome | 17576883 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Lung adenocarcinoma | 19525976 | CNVD |
| Lung cancer | 19525976 | CNVD |
| Prostate cancer | 17245344 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Cancer | 16751803 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Autism | 19415332 | CNVD |
| Malaria | 21533027 | CNVD |
| Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Acute promyelocytic leukemia | 19109227 | CNVD |
| Breast cancer | 21245420 | CNVD |
| Acute lymphoblastic leukemia | 21248843 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Ductal carcinoma | 22052326 | CNVD |
| Breast cancer | 21509527 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Epilepsy | 22083797 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Breast cancer | 21858162 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Liver carcinoma | 19366792 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Autism | 22495311 | CNVD |
| Congenital diaphragmatic hernia | 21064195 | CNVD |
| Ovarian cancer | 22355333 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Cancer | 20164920 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Esophageal squamous carcinoma | 18405350 | CNVD |
| Prostate cancer | 17217626 | CNVD |
| Developmental delay | 19128483 | CNVD |
| Neuroticism | 17667963 | CNVD |
| Leukoplakia | 24403051 | CNVD |
| Intellectual disability | 22045946 | CNVD |
| Malignant fibrous histiocytomas | 21085701 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Seminomas | 18059402 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Lung cancer | 18438408 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Colorectal cancer | 21645411 | CNVD |
| Colorectal cancer | 22014273 | CNVD |
| Lung squamous cell carcinoma | 22363434 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| Cancer | 20164919 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:3529200-3529400 | ZNF genes & repeats | Gastric | stomach |
| 2 | chr8:3529200-3530200 | Enhancers | Fetal Heart | heart |
| 3 | chr8:3530200-3531200 | Flanking Active TSS | Fetal Heart | heart |
| 4 | chr8:3531200-3532000 | Enhancers | Fetal Heart | heart |
| 5 | chr8:3532400-3535000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 6 | chr8:3535000-3535400 | Active TSS | ES-UCSF4 Cell Line | embryonic stem cell |
| 7 | chr8:3542000-3545200 | Enhancers | Fetal Heart | heart |
