Variant report

Variant	nsv1027460
Chromosome Location	chr7:61888128-62325501
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:45)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:45 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:61967943..61970858-chr7:75931774..75934475,2	MCF-7	breast:
2	chr7:61969210..61969976-chr8:53657642..53658150,2	MCF-7	breast:
3	chr10:42527395..42527923-chr7:61968860..61969524,4	MCF-7	breast:
4	chr10:42527415..42527915-chr7:61968777..61969450,2	MCF-7	breast:
5	chr1:121484723..121485367-chr7:62026258..62026778,2	MCF-7	breast:
6	chr10:42526394..42527915-chr7:61967791..61969362,3	MCF-7	breast:
7	chr20:55824160..55824726-chr7:61968550..61969274,2	MCF-7	breast:
8	chr20:49942718..49943230-chr7:61968963..61969517,2	MCF-7	breast:
9	chr20:46692208..46692789-chr7:61968943..61969520,2	MCF-7	breast:
10	chr7:62093615..62095373-chr7:62122563..62125212,2	K562	blood:
11	chr7:61967856..61971070-chr8:58714316..58715816,4	K562	blood:
12	chr17:73511595..73513321-chr7:61968020..61970850,2	MCF-7	breast:
13	chr20:3786959..3788753-chr7:61967828..61969450,2	MCF-7	breast:
14	chr7:61552820..61553340-chr7:62284727..62285248,3	MCF-7	breast:
15	chr10:42525601..42527915-chr7:61967079..61969468,3	K562	blood:
16	chr14:29714914..29715705-chr7:61970951..61971586,2	MCF-7	breast:
17	chr10:42527395..42527915-chr7:61968790..61969454,6	MCF-7	breast:
18	chr1:121483889..121484797-chr7:61974740..61975240,2	MCF-7	breast:
19	chr7:62284727..62285228-chr9:30620902..30621883,2	MCF-7	breast:
20	chr4:91025999..91028875-chr7:61969348..61970976,2	MCF-7	breast:
21	chr18:18518513..18519030-chr7:61979393..61979915,2	MCF-7	breast:
22	chr20:52370017..52370874-chr7:61969357..61969967,2	MCF-7	breast:
23	chr11:63950861..63953375-chr7:61969464..61971091,2	K562	blood:
24	chr3:64043547..64044153-chr7:61969362..61969878,2	MCF-7	breast:
25	chr13:53432415..53433397-chr7:61969357..61970027,2	MCF-7	breast:
26	chr7:61967856..61970847-chr8:58714316..58715816,2	K562	blood:
27	chr17:41380367..41382313-chr7:62191292..62192792,2	MCF-7	breast:
28	chr10:42527395..42527914-chr7:61968778..61969295,2	MCF-7	breast:
29	chr10:42526395..42527915-chr7:61967791..61969507,5	MCF-7	breast:
30	chr17:41399589..41402142-chr7:62189772..62191292,2	K562	blood:
31	chr1:149221735..149223983-chr7:61969300..61970873,2	K562	blood:
32	chr10:42525601..42527915-chr7:61967079..61969278,2	K562	blood:
33	chr17:41380312..41382165-chr7:62191292..62192792,2	K562	blood:
34	chr1:191006072..191007919-chr7:61967833..61970042,2	MCF-7	breast:
35	chr10:42527395..42527915-chr7:61970565..61971091,3	MCF-7	breast:
36	chr17:59328333..59331074-chr7:61967802..61970795,2	MCF-7	breast:
37	chr4:8654425..8657330-chr7:61967859..61969474,2	MCF-7	breast:
38	chr17:59939771..59941744-chr7:61968022..61970059,2	MCF-7	breast:
39	chr18:33251821..33252438-chr7:61968851..61969524,2	K562	blood:
40	chr19:14627777..14629340-chr7:61968008..61969542,2	MCF-7	breast:
41	chr17:41398894..41400557-chr7:62191292..62192792,2	K562	blood:
42	chr16:1429819..1431603-chr7:61967775..61969442,2	MCF-7	breast:
43	chr7:62093615..62095373-chr7:62122563..62125212,2	K562	blood:
44	chr14:102551841..102553604-chr7:61969473..61971085,2	MCF-7	breast:
45	chr2:230809935..230810929-chr7:61969025..61969969,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC006455.1-12	chr7:61970441-61970493	NONHSAT120885
2	lnc-AC006455.1-12	chr7:61968944-61969128	NONHSAT120885
3	lnc-AC006455.1-12	chr7:61969203-61969572	NONHSAT120885
4	lnc-AC006455.1-12	chr7:61971118-61971191	NONHSAT120885

No data

Variant related genes	Relation type
ENSG00000177303	chromatin interactions
ENSG00000182173	chromatin interactions
ENSG00000136492	chromatin interactions
ENSG00000106211	chromatin interactions
ENSG00000236383	chromatin interactions
ENSG00000132002	chromatin interactions
ENSG00000099797	chromatin interactions
ENSG00000080824	chromatin interactions
ENSG00000168439	chromatin interactions

Extended variants
information (count: 32003 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:32003 , 50 per page) page: 1 2 3 4 5 6 7 ... 641

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9719005	chr7:61888128-61888129	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs534165565	chr7:61888136-61888137	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs77475012	chr7:61888141-61888142	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs552744857	chr7:61888163-61888164	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs570919196	chr7:61888194-61888195	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs538548102	chr7:61888207-61888208	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145646639	chr7:61888208-61888209	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs117073021	chr7:61888222-61888223	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556414354	chr7:61888224-61888225	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs574521520	chr7:61888250-61888251	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs201122412	chr7:61888263-61888264	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs55949488	chr7:61888274-61888275	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs111657933	chr7:61888280-61888281	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs62457165	chr7:61888318-61888319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs553889613	chr7:61888325-61888326	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572499687	chr7:61888336-61888337	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs545929542	chr7:61888351-61888352	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs9769466	chr7:61888362-61888363	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs564314266	chr7:61888385-61888386	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs576122054	chr7:61888388-61888389	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs543760506	chr7:61888411-61888412	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112815025	chr7:61888447-61888448	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs10251633	chr7:61888455-61888456	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs528928891	chr7:61888456-61888457	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs547404641	chr7:61888485-61888486	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs559225813	chr7:61888486-61888487	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs145244143	chr7:61888515-61888516	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs551157562	chr7:61888532-61888533	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs571048653	chr7:61888540-61888541	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs538034584	chr7:61888543-61888544	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs550096566	chr7:61888545-61888546	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs568405772	chr7:61888546-61888547	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs28870501	chr7:61888557-61888558	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs553753240	chr7:61888561-61888562	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs370001267	chr7:61888565-61888566	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs565894542	chr7:61888589-61888590	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs539937665	chr7:61888590-61888591	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs557941535	chr7:61888622-61888623	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs576212618	chr7:61888636-61888637	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs372649842	chr7:61888637-61888638	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543625081	chr7:61888645-61888646	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555736695	chr7:61888648-61888649	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs573977201	chr7:61888680-61888681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs541295444	chr7:61888695-61888696	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs10242402	chr7:61888707-61888708	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs559317796	chr7:61888712-61888713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs111422068	chr7:61888719-61888720	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs78014244	chr7:61888728-61888729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs532765489	chr7:61888737-61888738	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545117608	chr7:61888739-61888740	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Bipolar disorder	19214233	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	21364760	CNVD
early-passage human iPS cells	21368824	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Schizophrenia	23813976	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:1572 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61865000-61899200	ZNF genes & repeats	Liver	Liver
2	chr7:61865400-61899200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr7:61865600-61899400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:61867600-61893400	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr7:61868600-61898800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr7:61883400-61898000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr7:61884200-61890000	Weak transcription	Aorta	Aorta
8	chr7:61887600-61899800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr7:61887800-61890800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:61888000-61888200	Bivalent/Poised TSS	Right Atrium	heart
11	chr7:61890000-61890800	Active TSS	Aorta	Aorta
12	chr7:61890200-61890600	Active TSS	Right Atrium	heart
13	chr7:61890800-61892000	Weak transcription	Aorta	Aorta
14	chr7:61891600-61893400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
15	chr7:61892000-61892400	ZNF genes & repeats	Aorta	Aorta
16	chr7:61892000-61893200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:61892400-61893000	Active TSS	Aorta	Aorta
18	chr7:61894600-61895200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr7:61894600-61899200	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr7:61894800-61896600	ZNF genes & repeats	Fetal Brain Male	brain
21	chr7:61895000-61898000	ZNF genes & repeats	Brain Anterior Caudate	brain
22	chr7:61897800-61898000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:61898000-61898600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
24	chr7:61902600-61917200	ZNF genes & repeats	Liver	Liver
25	chr7:61903200-61916800	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr7:61903400-61916200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
27	chr7:61903400-61917000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
28	chr7:61903800-61905200	Active TSS	Aorta	Aorta
29	chr7:61904000-61917200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:61904400-61917000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:61904400-61917200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr7:61905000-61912600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
33	chr7:61905200-61906400	Weak transcription	Aorta	Aorta
34	chr7:61905800-61906800	ZNF genes & repeats	Colon Smooth Muscle	Colon
35	chr7:61906000-61906800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:61906000-61906800	ZNF genes & repeats	Fetal Brain Male	brain
37	chr7:61906000-61915600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr7:61906200-61906600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr7:61906200-61906800	ZNF genes & repeats	Brain Hippocampus Middle	brain
40	chr7:61906400-61906600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:61906400-61906800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
42	chr7:61906400-61906800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr7:61906400-61906800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:61906400-61906800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
45	chr7:61906400-61906800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:61906400-61906800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
47	chr7:61906400-61906800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
48	chr7:61906400-61906800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:61906400-61906800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
50	chr7:61906400-61906800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links