Variant report

Variant	nsv1027629
Chromosome Location	chr9:26034116-26069178
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 767 )
Associated
traits (count: 118 )

Variant overlapped rSNPs/rCNVs (count:767 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113766049	chr9:26034137-26034138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs377281406	chr9:26034142-26034143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs527719098	chr9:26034144-26034145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs369655198	chr9:26034146-26034147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs552267250	chr9:26034221-26034222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs564287087	chr9:26034228-26034229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs531682648	chr9:26034243-26034244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs1537293	chr9:26034255-26034256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs568318137	chr9:26034268-26034269	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs535644268	chr9:26034291-26034292	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs568366161	chr9:26034296-26034297	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs1537292	chr9:26034314-26034315	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs370780052	chr9:26034359-26034360	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs116090229	chr9:26034375-26034376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs573668710	chr9:26034387-26034388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs533834039	chr9:26034393-26034394	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs558261312	chr9:26034431-26034432	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570424543	chr9:26034447-26034448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs114832040	chr9:26034454-26034455	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs547327805	chr9:26034459-26034460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs574701627	chr9:26034470-26034471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs541644995	chr9:26034612-26034613	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs7022838	chr9:26034653-26034654	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs529404221	chr9:26034781-26034782	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs12551101	chr9:26034790-26034791	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs556871654	chr9:26034793-26034794	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs564147724	chr9:26034794-26034795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs540945728	chr9:26038013-26038014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs558795130	chr9:26038026-26038027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs577254211	chr9:26038031-26038032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs79657491	chr9:26038048-26038049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs563091164	chr9:26038055-26038056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530621741	chr9:26038058-26038059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs192473322	chr9:26038070-26038071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112801449	chr9:26038091-26038092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs561139917	chr9:26038104-26038105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs529317141	chr9:26038148-26038149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs142349912	chr9:26038195-26038196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs546889306	chr9:26038207-26038208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs10757585	chr9:26038217-26038218	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs185077010	chr9:26038240-26038241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs533080010	chr9:26038250-26038251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs550988833	chr9:26038258-26038259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10757586	chr9:26038262-26038263	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs531604173	chr9:26038269-26038270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs536757796	chr9:26038293-26038294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs548344636	chr9:26038294-26038295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs567072471	chr9:26038340-26038341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs534117834	chr9:26038350-26038351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187859264	chr9:26038374-26038375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:118)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26033000-26034800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:26033400-26034600	Enhancers	NHDF-Ad	bronchial
3	chr9:26033600-26034600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:26038000-26040800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:26042000-26043400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:26043200-26044000	Enhancers	NHDF-Ad	bronchial
7	chr9:26043400-26043600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:26054000-26055200	Enhancers	HUVEC	blood vessel
9	chr9:26054000-26055600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:26054600-26055200	Enhancers	NH-A	brain
11	chr9:26054600-26055400	Enhancers	Hela-S3	cervix
12	chr9:26054600-26055600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:26054600-26055600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:26054600-26055600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:26054600-26055600	Enhancers	NHDF-Ad	bronchial
16	chr9:26054800-26055600	Enhancers	HSMM	muscle
17	chr9:26055000-26055400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:26055200-26055800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:26055600-26056800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:26055600-26057000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:26055600-26058200	Weak transcription	NHDF-Ad	bronchial
22	chr9:26055800-26058000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:26056000-26056200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:26056200-26057000	Enhancers	Fetal Brain Female	brain
25	chr9:26056200-26061000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:26057000-26057200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:26057000-26058800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:26058000-26058400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:26058200-26058800	Enhancers	NHDF-Ad	bronchial
30	chr9:26058200-26059000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:26058400-26062000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:26058600-26058800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr9:26058600-26059000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr9:26058800-26059800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr9:26059000-26059400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:26059400-26060200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr9:26059800-26060000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr9:26059800-26060400	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr9:26060200-26061200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr9:26060200-26061400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr9:26060400-26060800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr9:26060800-26061000	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr9:26060800-26062600	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr9:26061000-26061200	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr9:26061000-26062000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:26061000-26062200	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr9:26061200-26061600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr9:26061200-26062600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr9:26061400-26062200	Enhancers	H1 Cell Line	embryonic stem cell
50	chr9:26061600-26062200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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