Variant report

Variant	nsv1027956
Chromosome Location	chr6:67675088-67688737
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106066864..106069364-chr6:67678829..67681478,2	MCF-7	breast:
2	chr6:67680520..67684153-chr6:67686504..67689501,3	MCF-7	breast:
3	chr6:67680520..67684153-chr6:67686504..67689501,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168769	chromatin interactions

Extended variants
information (count: 165 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:165 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs151312332	chr6:67678837-67678838	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs568336535	chr6:67678894-67678895	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs530877153	chr6:67678947-67678948	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs201883291	chr6:67678956-67678957	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs190856183	chr6:67678967-67678968	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs377448921	chr6:67678977-67678978	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs72890123	chr6:67678985-67678986	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs539443686	chr6:67679034-67679035	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs553343568	chr6:67679056-67679057	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs565791792	chr6:67679064-67679065	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs77283270	chr6:67679113-67679114	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs140545831	chr6:67679129-67679130	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs9345940	chr6:67679168-67679169	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs35400614	chr6:67679184-67679185	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs543670317	chr6:67679197-67679198	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs115217421	chr6:67679250-67679251	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs9453939	chr6:67679253-67679254	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs557566074	chr6:67679255-67679256	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs545441206	chr6:67679282-67679283	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs559303174	chr6:67679287-67679288	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs61056552	chr6:67679293-67679294	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs73459668	chr6:67679335-67679336	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs537211422	chr6:67679344-67679345	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs369876032	chr6:67679362-67679363	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs370464337	chr6:67679392-67679393	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs562075948	chr6:67679433-67679434	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs184086841	chr6:67679439-67679440	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs565591840	chr6:67679493-67679494	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs7759407	chr6:67679506-67679507	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs570819078	chr6:67679550-67679551	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs189072228	chr6:67679551-67679552	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs546650935	chr6:67679556-67679557	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs566876023	chr6:67679591-67679592	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs535516264	chr6:67679593-67679594	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs150438483	chr6:67679610-67679611	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs368406782	chr6:67679614-67679615	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs568411333	chr6:67679633-67679634	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs537234022	chr6:67679672-67679673	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs192176119	chr6:67679699-67679700	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs576815438	chr6:67679740-67679741	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs76670756	chr6:67679780-67679781	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs552657847	chr6:67679846-67679847	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs9345941	chr6:67679851-67679852	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs9453940	chr6:67679869-67679870	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs562038901	chr6:67679901-67679902	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs559660812	chr6:67679903-67679904	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs575544057	chr6:67679927-67679928	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs184562569	chr6:67679973-67679974	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs35415011	chr6:67679976-67679977	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs34646421	chr6:67679989-67679990	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:67686200-67686400	Enhancers	Fetal Lung	lung
2	chr6:67686600-67687600	Weak transcription	Fetal Lung	lung
3	chr6:67687600-67688200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links