Variant report

Variant	nsv1028771
Chromosome Location	chr9:11833789-12092772
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPRD-5	chr9:11834674-11834959	XLOC_007647
2	lnc-PTPRD-5	chr9:11834674-11834988	XLOC_007647
3	lnc-PTPRD-5	chr9:11834674-11834959	XLOC_007647
4	lnc-MPDZ-9	chr9:12088660-12089015	NONHSAT130219

Variant related genes	Relation type
FLOT2	miRNA target sites

Extended variants
information (count: 2773 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:2773 , 50 per page) page: 1 2 3 4 5 6 7 ... 56

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572125799	chr9:11834678-11834679	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs540748364	chr9:11834696-11834697	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs563803174	chr9:11834730-11834731	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs141482906	chr9:11834764-11834765	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs187762186	chr9:11834765-11834766	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs369355606	chr9:11834771-11834772	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs192488298	chr9:11834779-11834780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs563129158	chr9:11834846-11834847	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs147596093	chr9:11834868-11834869	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs10960299	chr9:11834872-11834873	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs570019397	chr9:11834881-11834882	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs79881617	chr9:11834891-11834892	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs528645531	chr9:11834906-11834907	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs114700692	chr9:11834913-11834914	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs555794360	chr9:11834926-11834927	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs142046572	chr9:11834944-11834945	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs534461566	chr9:11834951-11834952	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs537537609	chr9:11834954-11834955	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs551033595	chr9:11834980-11834981	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs2129386	chr9:11867203-11867204	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs577248460	chr9:11867209-11867210	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs2046546	chr9:11867212-11867213	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs550534568	chr9:11867227-11867228	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs11787808	chr9:11867245-11867246	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs185748125	chr9:11867251-11867252	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs565057964	chr9:11867257-11867258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs113807697	chr9:11867258-11867259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs147912353	chr9:11867284-11867285	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs200475477	chr9:11867299-11867300	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs370247562	chr9:11867301-11867302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs373752864	chr9:11867303-11867304	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs377442546	chr9:11867304-11867305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs141662501	chr9:11867316-11867317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs557922562	chr9:11867324-11867325	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs577777845	chr9:11867326-11867327	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs370030520	chr9:11867344-11867345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs543463207	chr9:11867387-11867388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556949241	chr9:11867391-11867392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs147054761	chr9:11867418-11867419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs370430874	chr9:11867443-11867444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs559789705	chr9:11867455-11867456	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs528711492	chr9:11867460-11867461	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs74901370	chr9:11867464-11867465	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs114587776	chr9:11867466-11867467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs189164088	chr9:11867470-11867471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs113892616	chr9:11867490-11867491	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs140912936	chr9:11867531-11867532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs34166222	chr9:11867537-11867538	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs73413150	chr9:11867563-11867564	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs545259586	chr9:11867581-11867582	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Cancer	20164920	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Schizophrenia	18511947	CNVD
Schizophrenia	23813976	CNVD
Type 2 diabetes	21526130	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Chordoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	20967226	CNVD
early-passage human iPS cells	21368824	CNVD
Williams Syndrome	20824207	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11833600-11833800	Enhancers	Fetal Brain Male	brain
2	chr9:11867200-11868000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:11867200-11868000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:11867400-11867800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:11868800-11869000	Enhancers	Fetal Brain Female	brain
6	chr9:11869000-11871800	Weak transcription	Fetal Brain Female	brain
7	chr9:11871600-11871800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr9:11871800-11872400	Enhancers	Fetal Brain Male	brain
9	chr9:11871800-11872600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr9:11871800-11872800	Enhancers	Fetal Brain Female	brain
11	chr9:11874000-11874600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr9:11874000-11874600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:11874200-11874600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr9:11874200-11874600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:11874200-11874600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:11874200-11874600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:11874200-11874600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:11874200-11874800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:11874200-11875000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr9:11874200-11875400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr9:11874600-11875800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:11876000-11876200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:11892600-11893200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:11892600-11893200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:11892800-11893600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:11892800-11894200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:11893000-11893400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:11893200-11894800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:11894600-11895000	Enhancers	K562	blood
30	chr9:11894800-11895400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:11901600-11911400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:11902200-11902800	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr9:11912400-11912600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:11914800-11915000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:11914800-11915600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr9:11914800-11916600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr9:11914800-11916600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr9:11915000-11915600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr9:11915000-11916000	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr9:11915000-11916400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr9:11915000-11916400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr9:11915600-11915800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr9:11915600-11915800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr9:11915600-11915800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:11915600-11916000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr9:11915800-11916000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr9:11915800-11916000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr9:11916000-11916200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr9:11916000-11916200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr9:11916000-11916200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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