Variant report

Variant	nsv1028950
Chromosome Location	chr6:62206256-62249658
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1810 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:1810 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551773839	chr6:62206259-62206260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs564390838	chr6:62206261-62206262	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs528334191	chr6:62206266-62206267	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs183422180	chr6:62206276-62206277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs188821484	chr6:62206278-62206279	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs535578258	chr6:62206305-62206306	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs550387672	chr6:62206307-62206308	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs568540919	chr6:62206354-62206355	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs192660761	chr6:62206377-62206378	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs557293618	chr6:62206378-62206379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs573208415	chr6:62206379-62206380	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs534178101	chr6:62206388-62206389	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs555972432	chr6:62206395-62206396	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs574138553	chr6:62206416-62206417	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs544722098	chr6:62206422-62206423	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs373036687	chr6:62206434-62206435	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs4710268	chr6:62206437-62206438	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs113771749	chr6:62206445-62206446	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs578121492	chr6:62206448-62206449	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs112026472	chr6:62206455-62206456	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs184280126	chr6:62206466-62206467	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs188757921	chr6:62206467-62206468	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs191285411	chr6:62206468-62206469	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs571096533	chr6:62206474-62206475	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs371952459	chr6:62206482-62206483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs376366724	chr6:62206486-62206487	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs369637184	chr6:62206490-62206491	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs528433755	chr6:62206491-62206492	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs546569343	chr6:62206495-62206496	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs373236416	chr6:62206497-62206498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs538465495	chr6:62206500-62206501	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs202150655	chr6:62206501-62206502	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs376840215	chr6:62206502-62206503	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs368356301	chr6:62206505-62206506	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs386701867	chr6:62206513-62206514	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs550333453	chr6:62206514-62206515	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs200438946	chr6:62206520-62206521	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs539102932	chr6:62206521-62206522	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs142954039	chr6:62206526-62206527	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs79839162	chr6:62206531-62206532	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs543626221	chr6:62206534-62206535	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs74512508	chr6:62206547-62206548	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs75840694	chr6:62206549-62206550	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs77830692	chr6:62206551-62206552	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs76242373	chr6:62206560-62206561	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs76095991	chr6:62206568-62206569	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs183828631	chr6:62206583-62206584	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs138419101	chr6:62206590-62206591	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs555764273	chr6:62206608-62206609	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs146155813	chr6:62206613-62206614	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD
Tetralogy of Fallot	22912587	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62198600-62207400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:62205600-62213400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr6:62205800-62214600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr6:62207800-62209600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr6:62209400-62230600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr6:62210200-62212000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:62219200-62219400	ZNF genes & repeats	Psoas Muscle	Psoas
8	chr6:62219800-62223600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr6:62220800-62229200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:62221200-62229400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr6:62222800-62223000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr6:62223200-62224600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr6:62223800-62224800	ZNF genes & repeats	Psoas Muscle	Psoas
14	chr6:62224400-62227200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
15	chr6:62224800-62228000	ZNF genes & repeats	Liver	Liver
16	chr6:62225200-62226400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
17	chr6:62248200-62249000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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